Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Forward (+)

15310584 .. 15311663

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGATGATGCAGAAACAACAATACTCCCAAACGAAATCATATGCTCTGAAATACTCCCAAGGCTACCAGTCAAGACTCTTCTGCGTTTCAGGTGTGTATGCAAGTCCTGGTCCTCTCTCATCCTCAACCCCGGTTTCGCCACCGCTTACCGAAACCTCTGCTCCGGGGAGAGAAAGCGCTCTCACCTCCTCTTCTTTACATGTGAATCTGAATATCCAAAGGAGCAACGCGTCTTCTCCGTTCAGCTCAACCAAGGAGGGAGCCAAAGACGAGCCACCCACGTTCTTACTTTGAAGCAACTATATCAAGCACAAAGCAGAAAGGGCTTGGTTTGTTTTTCCCTTTCTAAAACTTCGAGTTCTTACCTTGAGGTCCTTGACAACCGTGTTCATATATTCAATCCCTCAACTCGACATGTGGTTACCCTCCCCCAGACTTCACGCGTGAATCTCACGGTCTATGTTGCACACCACTTTGGATTCATCTCTCTTACAAACGAGTACAAGGTTCTCCAAATCCAAAGATATAAGCGGGGTTTAATTTTTAACACTTTTGTCCTTCGTACAAGTACTACATGGAGGCAAGTAGAGGTAGACCTTGCTGATCTCCCTTTTGATCCTCTCGAGTTCAAATTTGATACTAGCAGTGTATCCACTTATGGGGCTATACATTGGCTGCACCCAACATTGAATATTATTGTGGCTTTCGACATGAATGGGGCTGAGAGATTTAAGGTGGTACAAATTCCTGATGGTATTGATCTACATGATGCCCTCGTCAGACTAGATAAAGTGGATGGATGTCTGGCTCTAATAGATGGGCGGAAGCAGCAAAGCTACATGAAGGGGTTATGGATTTTGAAGGATTACAAAAATCATGTCTGGGTTAAGGAGGATATATTGTTTCCTTTTCAGAATGATATAGTACGGGGCTTAGCCGATCTTCGTTTGCATCAATACAATATGAAGACTAAAAGTTACAGGTTAAGTCAAATTTTGTTGCCGGAATGGAGGAATGATAGTCGAATGTTGGACATGCTGACTAGTTATGATGAAGGCATTGTACCTTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

359

Amino Acids

41.65

Weight (kDa)

9.06

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 45	2.5e-06	F-box-like
F-box	PF00646	10 - 47	1.9e-06	F-box domain
FBA_3	PF08268	76 - 311	3.5e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	2 cut(s)	234, 447
AciI	CCGC	3 cut(s)	147, 535, 826
AclWI	GGATC	1 cut(s)	614
AcsI	RAATTY	3 cut(s)	635, 747, 996
AfaI	GTAC	6 cut(s)	506, 568, 574, 744, 930, 1068
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflIII	ACRYGT	4 cut(s)	203, 232, 418, 445
AgsI	TTSAA	5 cut(s)	298, 403, 634, 694, 865
AhlI	ACTAGT	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	250, 840
AluI	AGCT	2 cut(s)	250, 840
AlwI	GGATC	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	626
Aor51HI	AGCGCT	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	679, 832
ApoI	RAATTY	3 cut(s)	635, 747, 996
ArsI	GACNNNNNNTTYG	2 cut(s)	867, 899
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	114, 376
AsuC2I	CCSGG	2 cut(s)	135, 169
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	114, 376
BarI	GAAGNNNNNNTAC	1 cut(s)	1050
BbsI	GAAGAC	2 cut(s)	229, 977
BbvI	GCAGC	2 cut(s)	666, 844
BccI	CCATC	3 cut(s)	749, 794, 815
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	135, 169
BcuI	ACTAGT	1 cut(s)	1046
BfaI	CTAG	3 cut(s)	645, 788, 1047
BfoI	RGCGCY	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	2 cut(s)	680, 833
BlpI	GCTNAGC	1 cut(s)	937
BlsI	GCNGC	2 cut(s)	681, 834
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	3 cut(s)	112, 135, 169
Bme18I	GGWCC	2 cut(s)	114, 376
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	114, 376
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	112, 135, 169
BmsI	GCATC	2 cut(s)	763, 964
BpiI	GAAGAC	2 cut(s)	229, 977
Bpu1102I	GCTNAGC	1 cut(s)	937
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	2 cut(s)	135, 169
BsaJI	CCNNGG	4 cut(s)	62, 133, 168, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	4 cut(s)	62, 133, 168, 256
BseGI	GGATG	3 cut(s)	123, 805, 809
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	666, 844
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	234, 447
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	135, 168, 1007
BslI	CCNNNNNNNGG	1 cut(s)	663
BsoBI	CYCGRG	1 cut(s)	626
Bsp143I	GATC	4 cut(s)	607, 619, 763, 943
Bsp1720I	GCTNAGC	1 cut(s)	937
BspACI	CCGC	3 cut(s)	147, 535, 826
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	2 cut(s)	234, 447
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	62, 133, 168, 256
BssMI	GATC	4 cut(s)	607, 619, 763, 943
BssT1I	CCWWGG	2 cut(s)	62, 256
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	389, 460
Bst6I	CTCTTC	2 cut(s)	87, 200
BstDEI	CTNAG	2 cut(s)	726, 937
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	123, 805, 809
BstFNI	CGCG	2 cut(s)	234, 447
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	610, 622, 766, 946
BstMBI	GATC	4 cut(s)	607, 619, 763, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 832
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	3 cut(s)	207, 422, 1042
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	110, 133, 167
BstUI	CGCG	2 cut(s)	234, 447
BstV1I	GCAGC	2 cut(s)	666, 844
BstV2I	GAAGAC	2 cut(s)	229, 977
BsuI	GTATCC	1 cut(s)	664
BtsCI	GGATG	3 cut(s)	123, 805, 809
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	114, 376
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	6 cut(s)	505, 567, 573, 743, 929, 1067
CviAII	CATG	8 cut(s)	204, 419, 579, 715, 770, 844, 881, 1039
CviQI	GTAC	6 cut(s)	505, 567, 573, 743, 929, 1067
DdeI	CTNAG	2 cut(s)	726, 937
DpnI	GATC	4 cut(s)	609, 621, 765, 945
DpnII	GATC	4 cut(s)	607, 619, 763, 943
Eam1104I	CTCTTC	2 cut(s)	87, 200
EarI	CTCTTC	2 cut(s)	87, 200
EciI	GGCGGA	1 cut(s)	841
Eco130I	CCWWGG	2 cut(s)	62, 256
Eco47I	GGWCC	2 cut(s)	114, 376
Eco47III	AGCGCT	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	62, 256
ErhI	CCWWGG	2 cut(s)	62, 256
FaeI	CATG	8 cut(s)	207, 422, 582, 718, 773, 847, 884, 1042
FatI	CATG	8 cut(s)	203, 418, 578, 714, 769, 843, 880, 1038
FauI	CCCGC	1 cut(s)	528
FauNDI	CATATG	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	680, 833
FokI	GGATG	3 cut(s)	110, 812, 816
Fsp4HI	GCNGC	2 cut(s)	680, 833
FspBI	CTAG	3 cut(s)	645, 788, 1047
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	680, 833
HaeII	RGCGCY	1 cut(s)	184
HapII	CCGG	3 cut(s)	135, 168, 1007
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	8 cut(s)	207, 422, 582, 718, 773, 847, 884, 1042
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	79, 209, 451, 483
HpaII	CCGG	3 cut(s)	135, 168, 1007
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	52, 214, 785, 918
Hpy188III	TCNNGA	3 cut(s)	76, 626, 752
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	4 cut(s)	572, 841, 859, 1052
HpyCH4III	ACNGT	2 cut(s)	389, 460
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	14, 105, 470, 682, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 832
HpyF3I	CTNAG	2 cut(s)	726, 937
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	8 cut(s)	207, 422, 582, 718, 773, 847, 884, 1042
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	607, 619, 763, 943
LmnI	GCTCC	3 cut(s)	170, 226, 264
Lsp1109I	GCAGC	2 cut(s)	666, 844
LweI	GCATC	2 cut(s)	763, 964
MaeI	CTAG	3 cut(s)	645, 788, 1047
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	424, 980
MalI	GATC	4 cut(s)	609, 621, 765, 945
MboI	GATC	4 cut(s)	607, 619, 763, 943
MboII	GAAGA	6 cut(s)	17, 74, 187, 229, 938, 982
MluCI	AATT	4 cut(s)	543, 635, 747, 996
MluI	ACGCGT	2 cut(s)	232, 445
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	1014
MseI	TTAA	6 cut(s)	542, 549, 735, 891, 989, 1073
MspI	CCGG	3 cut(s)	135, 168, 1007
MspR9I	CCNGG	3 cut(s)	112, 135, 169
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	234, 447
MwoI	GCNNNNNNNGC	2 cut(s)	327, 832
NciI	CCSGG	2 cut(s)	135, 169
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	4 cut(s)	607, 619, 763, 943
NlaIII	CATG	8 cut(s)	207, 422, 582, 718, 773, 847, 884, 1042
NlaIV	GGNNCC	1 cut(s)	266
NspI	RCATGY	3 cut(s)	207, 422, 1042
PaeR7I	CTCGAG	1 cut(s)	626
PciI	ACATGT	2 cut(s)	203, 418
PfeI	GAWTC	3 cut(s)	209, 451, 483
PkrI	GCNGC	2 cut(s)	681, 834
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	376
PscI	ACATGT	2 cut(s)	203, 418
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	114, 376
PspPPI	RGGWCCY	1 cut(s)	376
RsaI	GTAC	6 cut(s)	506, 568, 574, 744, 930, 1068
RsaNI	GTAC	6 cut(s)	505, 567, 573, 743, 929, 1067
SaqAI	TTAA	6 cut(s)	542, 549, 735, 891, 989, 1073
SatI	GCNGC	2 cut(s)	680, 833
Sau3AI	GATC	4 cut(s)	607, 619, 763, 943
Sau96I	GGNCC	2 cut(s)	114, 376
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	3 cut(s)	112, 135, 169
SfaNI	GCATC	2 cut(s)	763, 964
Sfr274I	CTCGAG	1 cut(s)	626
SinI	GGWCC	2 cut(s)	114, 376
SlaI	CTCGAG	1 cut(s)	626
SmlI	CTYRAG	2 cut(s)	371, 626
SmoI	CTYRAG	2 cut(s)	371, 626
SpeI	ACTAGT	1 cut(s)	1046
Sse9I	AATT	4 cut(s)	543, 635, 747, 996
SsiI	CCGC	3 cut(s)	147, 535, 826
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	645, 788, 1047
StyD4I	CCNGG	3 cut(s)	110, 133, 167
StyI	CCWWGG	2 cut(s)	62, 256
TaaI	ACNGT	2 cut(s)	389, 460
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	359, 415, 627, 711, 1027
TasI	AATT	4 cut(s)	543, 635, 747, 996
TatI	WGTACW	2 cut(s)	504, 572
TfiI	GAWTC	3 cut(s)	209, 451, 483
Tru1I	TTAA	6 cut(s)	542, 549, 735, 891, 989, 1073
Tru9I	TTAA	6 cut(s)	542, 549, 735, 891, 989, 1073
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	2 cut(s)	679, 832
TspDTI	ATGAA	6 cut(s)	383, 475, 731, 860, 983, 1071
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	114, 376
XapI	RAATTY	3 cut(s)	635, 747, 996
XceI	RCATGY	3 cut(s)	207, 422, 1042
XhoI	CTCGAG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	3 cut(s)	645, 788, 1047
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.