Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Reverse (-)

8479536 .. 8481353

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGAACTACAATGTGACACCTAGAATCACATCCCCTGAGAGAGATTTTAGTGCCAATTTTAATGTGGCACAATCCAACTGGTTGATTACCAAACTAAGCAGAGATGGAAAGGTTGGAGAAGCACGCCAAGTGTTTGATGAAATGCCTGACAAAGATGTGGTGACATGGACGACAGTGATCACAGGGTATATCAAGTGTGGGATGGTTGAGGAGGCTAGGAGGCTGTTTGACAGAGTGGATGCTAAGAAGAATGTGATTACGTGGACTGCGTTGGTTAGTGGGTATATAAGGCTGAAACGAATTAAGGAGGCAGAGAGGTTGTTTTATGAGATGCCGGAGAAGAATGTGGTTTCTTGGAACACCATGATTGATGGGTATGCACGGGATGGCCAGGTGGATAGGGCTTTGGACTTGTTTAAGAGGATGCCAGAGAGGAATGTGGTTTCGTGGAATACAGTTTTAACCGCTTTGGCACAGTGTGGCAGGATTGAAGAGGCAAGGTCACTTTTCAAACTGATGCCCGAAAGGGATATTATTTCCTGGACAGCAATGGTTGCGGGATTTTCAAGAAATGGCATGATTGATGAAGCTCGAGAATTTTTTGAGAGGATGCCTAAAAGGAATGTGGTGTCGTGGAATGCAATGATTACGGGCTACACCCAGAGTTTGAGATTGGATGAGGCTCTTGAATTGTTTGAGAGGATGCCAGAGAGGGACATACCTTCATGGAATACAATGATCACTGGTTTTATTCATAATGGGGATTTAAAGAGGGCAGAGGAGTTGTTTGTGAAAATGCCACGGAAGAACGTCATCTCTTGGACTACAATGATCACAGGGTATGTACAAGATGGGGAAAATGAAAAAGCATTGATGACTTTTTCAAACATGCTGGCAGATAATGGAGTGAAACCTAATCAGGGAACTTTTGTGAGTGTGTTAAGTGCTTGTAGTAACTTAGCTAGTTTTAGTGAGGGACAACAAATACATCAGATGATAACTAAAACAGTCCATCAGGAATGTGCATTCTTGGTATCCGCACTCATAAACATGTATTCAAAATGTGGGGAGTTAGTCACTGCTAGGAAGATGTTTGAAGATGGATTGACCATTCATAGGGATGTGATCTCATGGAATGGTATGATCGCAGCCTATGCACATCATGGATGTGGCATTGAGGCGATTAACTTGTTTAATGAAATGCGGAAATTAGGATTCAAACCTGATGATGTTACCTTTGTGGGGCTGCTTTCTGCATGCAGTCATGCTGGTTTGGTGGAGGAGGGGATAAAATATTTTAATGAGCTTCTTACAGATGGGTCAATAGAAGTGAGGGAAGATCATTACACATGCTTGGTTGATCTCTGTGGTCGGGCAGGGAGGCTTAAGGAGGCTTTTGATGTGCTTAAGAAGCTGGGAACTAAGCTATCAGCATCTGTTTGGGGGGCTCTTGCTGCTGGATGCAATGTTCATGGTAACATAGATATCGGGAAGCTGGCTGCCGAGAAGCTTTTAGGGGAGGGGCCAGAGAATCCAGGCAGTTACTTGTTGTTGAGTAACATATATGCTTCATCTGGGAAATGGAGAGAAGCTGCAAAGATGAGAATGAAATTGAAAGAGAAGAGGTTGAAGAAGCAACCTGGGTGCAGTTGGATAGAAGTTGGAAATAAGGTGCATGTGTTTGTGGTTGGCGATGAGTCTCATTGTCAATATAAAGTTATATATTCTTTACTTAGCAATCTTCATGAAAGAATGAAGAAGATTGGGTATGTCCCGTACAATGACTTGATAGTAGATGATTGTTTTTCAGTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

606

Amino Acids

68.44

Weight (kDa)

7.52

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	51 - 77	3.5e-06	PPR repeat family
PPR	PF01535	54 - 78	2.1e-06	PPR repeat
PPR_2	PF13041	83 - 116	7.4e-06	PPR repeat family
PPR	PF01535	86 - 116	9.8e-07	PPR repeat
PPR_2	PF13041	114 - 147	9.9e-10	PPR repeat family
PPR_1	PF12854	115 - 142	8.5e-09	PPR repeat
PPR	PF01535	117 - 147	2.2e-10	PPR repeat
PPR_2	PF13041	145 - 178	1.8e-06	PPR repeat family
PPR	PF01535	148 - 178	4e-07	PPR repeat
PPR_2	PF13041	176 - 209	9.3e-06	PPR repeat family
PPR	PF01535	179 - 209	1e-07	PPR repeat
PPR_2	PF13041	207 - 240	1.7e-07	PPR repeat family
PPR	PF01535	210 - 240	2.1e-08	PPR repeat
PPR_2	PF13041	239 - 271	4.2e-06	PPR repeat family
PPR	PF01535	242 - 271	5e-07	PPR repeat
PPR_2	PF13041	269 - 318	7.1e-10	PPR repeat family
PPR_2	PF13041	373 - 421	1.8e-12	PPR repeat family
PPR	PF01535	376 - 406	8.7e-08	PPR repeat
E_motif	PF20431	491 - 553	4.1e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	465, 557, 1038, 1204
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	846, 1778
AfiI	CCNNNNNNNGG	3 cut(s)	920, 1116, 1242
AflII	CTTAAG	2 cut(s)	1385, 1406
AflIII	ACRYGT	1 cut(s)	1050
AjnI	CCWGG	4 cut(s)	390, 539, 1534, 1639
AloI	GAACNNNNNNTCC	2 cut(s)	1452, 1484
AluBI	AGCT	8 cut(s)	590, 962, 1306, 1414, 1426, 1495, 1510, 1592
AluI	AGCT	8 cut(s)	590, 962, 1306, 1414, 1426, 1495, 1510, 1592
Alw26I	GTCTC	1 cut(s)	1704
AlwNI	CAGNNNCTG	1 cut(s)	1436
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	2 cut(s)	388, 1523
ApeKI	GCWGC	5 cut(s)	1148, 1246, 1454, 1499, 1592
ApoI	RAATTY	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	1523
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	1450
BbvI	GCAGC	5 cut(s)	1160, 1233, 1441, 1486, 1579
BccI	CCATC	8 cut(s)	98, 196, 365, 380, 845, 1020, 1094, 1310
BciT130I	CCWGG	4 cut(s)	392, 541, 1536, 1641
BciVI	GTATCC	1 cut(s)	1045
BclI	TGATCA	3 cut(s)	177, 738, 831
BcoDI	GTCTC	1 cut(s)	1704
BfaI	CTAG	4 cut(s)	21, 216, 963, 1083
BfrI	CTTAAG	2 cut(s)	1385, 1406
BfuI	GTATCC	1 cut(s)	1045
BisI	GCNGC	5 cut(s)	1149, 1247, 1455, 1500, 1593
BlsI	GCNGC	5 cut(s)	1150, 1248, 1456, 1501, 1594
Bme1390I	CCNGG	4 cut(s)	392, 541, 1536, 1641
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	1523
BmiI	GGNNCC	1 cut(s)	1524
BmrFI	CCNGG	4 cut(s)	392, 541, 1536, 1641
BmsI	GCATC	8 cut(s)	229, 321, 414, 507, 600, 693, 1442, 1451
BsaAI	YACGTR	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	800, 1640
Bsc4I	CCNNNNNNNGG	3 cut(s)	920, 1116, 1242
Bse1I	ACTGG	2 cut(s)	83, 748
Bse3DI	GCAATG	3 cut(s)	555, 648, 1471
BseBI	CCWGG	4 cut(s)	392, 541, 1536, 1641
BseDI	CCNNGG	2 cut(s)	800, 1640
BseLI	CCNNNNNNNGG	3 cut(s)	920, 1116, 1242
BseMI	GCAATG	3 cut(s)	555, 648, 1471
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	83, 748
BseRI	GAGGAG	3 cut(s)	224, 794, 1295
BseXI	GCAGC	5 cut(s)	1160, 1233, 1441, 1486, 1579
BseYI	CCCAGC	1 cut(s)	1414
BsgI	GTGCAG	1 cut(s)	1666
BshFI	GGCC	2 cut(s)	390, 1525
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	3 cut(s)	728, 990, 1757
BslI	CCNNNNNNNGG	3 cut(s)	920, 1116, 1242
BsmAI	GTCTC	1 cut(s)	1704
BsmFI	GGGAC	3 cut(s)	728, 990, 1757
BsmI	GAATGC	2 cut(s)	643, 1025
BsnI	GGCC	2 cut(s)	390, 1525
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	1450
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
BspACI	CCGC	4 cut(s)	465, 557, 1038, 1204
BspANI	GGCC	2 cut(s)	390, 1525
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	1744
BspLI	GGNNCC	1 cut(s)	1524
BspTI	CTTAAG	2 cut(s)	1385, 1406
BsrDI	GCAATG	3 cut(s)	555, 648, 1471
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	2 cut(s)	83, 748
BssECI	CCNNGG	2 cut(s)	800, 1640
BssMI	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
Bst2UI	CCWGG	4 cut(s)	392, 541, 1536, 1641
Bst4CI	ACNGT	4 cut(s)	175, 457, 477, 1009
Bst6I	CTCTTC	2 cut(s)	486, 1616
BstAFI	CTTAAG	2 cut(s)	1385, 1406
BstAPI	GCANNNNNTGC	2 cut(s)	554, 1154
BstAUI	TGTACA	1 cut(s)	844
BstBAI	YACGTR	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	124, 894, 1258, 1497
BstDEI	CTNAG	6 cut(s)	36, 95, 243, 958, 1422, 1733
BstDSI	CCRYGG	1 cut(s)	800
BstKTI	GATC	7 cut(s)	180, 741, 834, 1128, 1146, 1342, 1363
BstMAI	GTCTC	1 cut(s)	1704
BstMBI	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 1154, 1411, 1454
BstNI	CCWGG	4 cut(s)	392, 541, 1536, 1641
BstNSI	RCATGY	5 cut(s)	892, 1054, 1260, 1353, 1679
BstSCI	CCNGG	4 cut(s)	390, 539, 1534, 1639
BstV1I	GCAGC	5 cut(s)	1160, 1233, 1441, 1486, 1579
BsuI	GTATCC	1 cut(s)	1045
BsuRI	GGCC	2 cut(s)	390, 1525
BtgI	CCRYGG	1 cut(s)	800
BtgZI	GCGATG	1 cut(s)	1707
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	4 cut(s)	180, 482, 741, 1077
Cac8I	GCNNGC	4 cut(s)	124, 894, 1258, 1497
CaiI	CAGNNNCTG	1 cut(s)	1436
CciI	TCATGA	1 cut(s)	1744
Cfr13I	GGNCC	1 cut(s)	1523
Csp6I	GTAC	2 cut(s)	845, 1777
CviQI	GTAC	2 cut(s)	845, 1777
DdeI	CTNAG	6 cut(s)	36, 95, 243, 958, 1422, 1733
DpnI	GATC	7 cut(s)	179, 740, 833, 1127, 1145, 1341, 1362
DpnII	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
DraI	TTTAAA	1 cut(s)	768
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	486, 1616
EarI	CTCTTC	2 cut(s)	486, 1616
Eco24I	GRGCYC	1 cut(s)	1450
Eco32I	GATATC	1 cut(s)	1486
Eco88I	CYCGRG	1 cut(s)	591
EcoRII	CCWGG	4 cut(s)	390, 539, 1534, 1639
EcoRV	GATATC	1 cut(s)	1486
EcoT38I	GRGCYC	1 cut(s)	1450
FaqI	GGGAC	3 cut(s)	728, 990, 1757
FauI	CCCGC	1 cut(s)	550
FbaI	TGATCA	3 cut(s)	177, 738, 831
Fnu4HI	GCNGC	5 cut(s)	1149, 1247, 1455, 1500, 1593
FriOI	GRGCYC	1 cut(s)	1450
Fsp4HI	GCNGC	5 cut(s)	1149, 1247, 1455, 1500, 1593
FspBI	CTAG	4 cut(s)	21, 216, 963, 1083
GluI	GCNGC	5 cut(s)	1149, 1247, 1455, 1500, 1593
GsaI	CCCAGC	1 cut(s)	1418
HaeIII	GGCC	2 cut(s)	390, 1525
HapII	CCGG	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	1508
HinfI	GANTC	4 cut(s)	24, 1215, 1531, 1697
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	993
Hpy188III	TCNNGA	6 cut(s)	567, 593, 686, 1016, 1489, 1745
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	732
HpyCH4III	ACNGT	4 cut(s)	175, 457, 477, 1009
HpyCH4IV	ACGT	2 cut(s)	260, 810
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 1154, 1411, 1454
HpyF3I	CTNAG	6 cut(s)	36, 95, 243, 958, 1422, 1733
HpySE526I	ACGT	2 cut(s)	260, 810
Ksp22I	TGATCA	3 cut(s)	177, 738, 831
Kzo9I	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
Lsp1109I	GCAGC	5 cut(s)	1160, 1233, 1441, 1486, 1579
LweI	GCATC	8 cut(s)	229, 321, 414, 507, 600, 693, 1442, 1451
MaeI	CTAG	4 cut(s)	21, 216, 963, 1083
MaeII	ACGT	2 cut(s)	260, 810
MalI	GATC	7 cut(s)	179, 740, 833, 1127, 1145, 1341, 1362
MboI	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
MhlI	GDGCHC	1 cut(s)	1450
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	6 cut(s)	55, 300, 596, 689, 1208, 1610
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	1706
MmeI	TCCRAC	4 cut(s)	94, 99, 1631, 1642
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MslI	CAYNNNNRTG	3 cut(s)	1049, 1119, 1167
Msp20I	TGGCCA	1 cut(s)	390
MspCI	CTTAAG	2 cut(s)	1385, 1406
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	4 cut(s)	392, 541, 1536, 1641
Mva1269I	GAATGC	2 cut(s)	643, 1025
MvaI	CCWGG	4 cut(s)	392, 541, 1536, 1641
MwoI	GCNNNNNNNGC	4 cut(s)	554, 1154, 1411, 1454
NdeII	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
NlaIV	GGNNCC	1 cut(s)	1524
NmeAIII	GCCGAG	1 cut(s)	1528
NmuCI	GTSAC	4 cut(s)	13, 160, 501, 1075
NspI	RCATGY	5 cut(s)	892, 1054, 1260, 1353, 1679
PaeI	GCATGC	1 cut(s)	1260
PaeR7I	CTCGAG	1 cut(s)	591
PagI	TCATGA	1 cut(s)	1744
PciI	ACATGT	1 cut(s)	1050
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	2 cut(s)	643, 1025
PfeI	GAWTC	3 cut(s)	24, 1215, 1531
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	5 cut(s)	1150, 1248, 1456, 1501, 1594
PleI	GAGTC	1 cut(s)	1705
PpsI	GAGTC	1 cut(s)	1705
Ppu21I	YACGTR	1 cut(s)	261
PscI	ACATGT	1 cut(s)	1050
Psp6I	CCWGG	4 cut(s)	390, 539, 1534, 1639
PspFI	CCCAGC	1 cut(s)	1414
PspGI	CCWGG	4 cut(s)	390, 539, 1534, 1639
PspN4I	GGNNCC	1 cut(s)	1524
PspPI	GGNCC	1 cut(s)	1523
PstNI	CAGNNNCTG	1 cut(s)	1436
RsaI	GTAC	2 cut(s)	846, 1778
RsaNI	GTAC	2 cut(s)	845, 1777
RseI	CAYNNNNRTG	3 cut(s)	1049, 1119, 1167
SatI	GCNGC	5 cut(s)	1149, 1247, 1455, 1500, 1593
Sau3AI	GATC	7 cut(s)	177, 738, 831, 1125, 1143, 1339, 1360
Sau96I	GGNCC	1 cut(s)	1523
SchI	GAGTC	1 cut(s)	1706
ScrFI	CCNGG	4 cut(s)	392, 541, 1536, 1641
SduI	GDGCHC	1 cut(s)	1450
SfaNI	GCATC	8 cut(s)	229, 321, 414, 507, 600, 693, 1442, 1451
Sfr274I	CTCGAG	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	3 cut(s)	1049, 1119, 1167
SmlI	CTYRAG	3 cut(s)	591, 1385, 1406
SmoI	CTYRAG	3 cut(s)	591, 1385, 1406
SphI	GCATGC	1 cut(s)	1260
Sse9I	AATT	6 cut(s)	55, 300, 596, 689, 1208, 1610
SsiI	CCGC	4 cut(s)	465, 557, 1038, 1204
SspI	AATATT	1 cut(s)	1295
SspMI	CTAG	4 cut(s)	21, 216, 963, 1083
StyD4I	CCNGG	4 cut(s)	390, 539, 1534, 1639
TaaI	ACNGT	4 cut(s)	175, 457, 477, 1009
TaiI	ACGT	2 cut(s)	263, 813
TaqI	TCGA	1 cut(s)	592
TasI	AATT	6 cut(s)	55, 300, 596, 689, 1208, 1610
TatI	WGTACW	1 cut(s)	844
TfiI	GAWTC	3 cut(s)	24, 1215, 1531
TscAI	CASTG	4 cut(s)	180, 482, 748, 1084
TseFI	GTSAC	4 cut(s)	13, 160, 501, 1075
TseI	GCWGC	5 cut(s)	1148, 1246, 1454, 1499, 1592
Tsp45I	GTSAC	4 cut(s)	13, 160, 501, 1075
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	4 cut(s)	180, 482, 748, 1084
Vha464I	CTTAAG	2 cut(s)	1385, 1406
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	5 cut(s)	892, 1054, 1260, 1353, 1679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	591
XspI	CTAG	4 cut(s)	21, 216, 963, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.