Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0012039

Physical Location & Seq

Genomic Coordinates Reverse (-)

26885043 .. 26887071

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGACACATGTTATGAACAGAGCCAGATTACCACTCTTGAGTTTTGGTCAAGCTCTCCGTACTCCCAGACTTGCATACCACTCCATGACCCAGAAAGCCTCACCCAGAATCACAATGCCGGACAGAGACTACAGTGCCAGCTCCGACGTGGCCAAGTCCAACTGGCTGATCACGAAGCTCAGCAGAGACGGCAAAGTTGGAGAAGCCCGCCAAGTGTTCGACGAAATGCCTGAGAGAGACGTGGTGACGTGGACGACGGTGATCACGGCGTACGTCAAGTGCGGGATGGTGGAGGAGGCCAGGAGGCTGTTTGATAGACCCGATGCTGAGAAGAATGTTATCACTTGGACTGCCTTGGTTGGCGGGTATATAAGGCTGAGACGGATTAAGGAGGCTGAGTGGTTGTTCTGTCAAATGCCGGTGAGGAATGTGGTTTCTTGGAACACTATGATTGATGGGTACGCGAGGAGCCGGCAGGTTGATCAGGCGTTGGAGTTGTTTGAGAGGATGCCGGAGAGGAATGTGGTTTCTTGGAACACGGTTTTGACGGCTCTGGCGCAATGTGGGAGGATTGAGGAGGCCAGGAGGTTGTTTGGTTTGATGCCGGAAAGGGATGTTATTTCGTGGACCGCAATGGTGGCAGGGTTTTCAAGAAATGGGAGGGTTGATGAAGCTAGAGAGGTTTTTGATAGGATGCCGAGAAGGAATGTGGTCGTGGAATGCAATGATCACGGGTTATGCTCAGAATGGGAGGCTGGAGGAGCTCTTGAACTTTTTGAGAGGATGCCAGAGAGGGACATGCCTTCGTGGAATACGATGGTTACTGGCTTTATTCAGAATGGGGATTTAAAGCGCGCGTGGGACTTGTTTATTCAAATGCCACAGAAGAATGTCATATCATGGACTACAATGATCACTGGGTATGTACAAGATGGGAGAAATGAAGATGCATTGATGATCTTTTCGAAAATGGTGGCTGATAATGGGGTGAGACCTAATCAGGGAACTTTTGTCAGTATCTTGAGTGCTTGTAGTAACTTAGCTGGTCTTTGTGAGGGACGTCAAATACATCAGATGATAACTAAAACAGTTATCAGGAATGCGTACATTTGGTTCTCTGCTAGGAAGATGTTTGAAGATGGATCGACAATCCATAGGGATTTTATCTCCTGGAATGGAATGATTGCAGCCTATGCACATCATGGATGTGGTATTGAGGCAATTAACTTGTATAATGAAATGCGACAATTGGGGTGCAAACCTGATGATGTTACTTATGTGGGGCTGCTTTCTGCATGCAGCCATGCTGGTTTGGTGGAGGAGGGACTAAATCTTTTTGATGAGCTTCTTAGAGATGGGTCAATACAAGTGAGGGAAGATCATTACACTTGCTTAGTTGATCTTTGTGGTCGAGCAGGGAGGCTGAAGGAGGCTTTTGACATCCTTGAGAAACTTGGGACCAACCCATCAGCATCTAATTGGGGGGCTCTTCTTGCTGGATGTATTGATCATCGTAACATGGATACCGGGAAGCTAGCTGCTGAGAAGCTTTTAAAGGAGGGACCAGATGATGCAGGCAGTTACTCGTTGTTGTGGAACTTTTATGCTAGATCTGGGAATTGGAGAGAAGCTGCAAAGATGAGGATTAAAATGAAAGAGAAGGGGTTGAAAAAGCAGCCTGGTTGCAGTTGGATAGAAATTGGAAATATGGTGCATGTGTTTGTGGTCGGTGATAAGTCTCATTGCCAATCTCAACCTATATATTCTGCACTTCACGATTTACATAAACAAATGGAGAAGATTGGGTATGTACCAAGAAATGATTTGAATGTGGATGAAGATATTTCAATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

618

Amino Acids

70.15

Weight (kDa)

6.72

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	79 - 105	5.3e-06	PPR repeat family
PPR	PF01535	82 - 106	1.9e-06	PPR repeat
PPR_1	PF12854	142 - 170	8.5e-08	PPR repeat
PPR_2	PF13041	142 - 175	1.6e-09	PPR repeat family
PPR	PF01535	145 - 175	1.2e-09	PPR repeat
PPR_2	PF13041	173 - 205	5.8e-06	PPR repeat family
PPR	PF01535	176 - 205	2.7e-06	PPR repeat
PPR_2	PF13041	204 - 237	1.6e-06	PPR repeat family
PPR_1	PF12854	204 - 232	5.3e-07	PPR repeat
PPR	PF01535	207 - 237	3.5e-08	PPR repeat
PPR_2	PF13041	268 - 298	5.3e-06	PPR repeat family
PPR_2	PF13041	296 - 345	2.3e-10	PPR repeat family
PPR_3	PF13812	296 - 345	4.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	299 - 326	2.8e-06	PPR repeat
PPR_long	PF17177	315 - 486	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	387 - 434	4.6e-12	PPR repeat family
PPR	PF01535	389 - 419	2.3e-07	PPR repeat
E_motif	PF20431	504 - 566	7.8e-18	E motif
Eplus_motif	PF20430	571 - 598	9.9e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35030
fragaria_vesca	FvH4_7g06880 FvH4_7g06880
prunus_persica	Prupe.7G042800_v2.0.a1
pyrus_communis	pycom12g07780
rosa_chinensis	RchiOBHm_Chr1g0336641 RchiOBHm_Chr1g0336671
rosa_laevigata	RLG00000029341 RLG00000029342
rosa_multiflora	Rmu_co8277885.1_g000001 Rmu_sc0000907.1_g000005 Rmu_sc0000907.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315400
rosa_rugosa	Rorug01G0127400 Rorug04G0097200
rosa_samantha	Rh1AG148300 Rh1BG116300 Rh1CG139700
rosa_wichuraiana	Rw1G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1063
Acc36I	ACCTGC	1 cut(s)	466
AccII	CGCG	3 cut(s)	464, 855, 857
AciI	CCGC	4 cut(s)	208, 282, 363, 630
AclWI	GGATC	1 cut(s)	1150
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	1445
AcyI	GRCGYC	1 cut(s)	1060
AfaI	GTAC	6 cut(s)	61, 272, 461, 927, 1106, 1812
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	7 cut(s)	651, 770, 875, 1136, 1669, 1828, 1848
AjiI	CACGTC	3 cut(s)	148, 241, 249
AjnI	CCWGG	4 cut(s)	299, 581, 1169, 1678
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	6 cut(s)	120, 180, 231, 373, 985, 1743
AlwI	GGATC	1 cut(s)	1150
AoxI	GGCC	3 cut(s)	150, 297, 579
ApeKI	GCWGC	6 cut(s)	1187, 1285, 1299, 1538, 1631, 1675
AspLEI	GCGC	3 cut(s)	559, 855, 857
AspS9I	GGNCC	3 cut(s)	627, 1458, 1562
AsuC2I	CCSGG	1 cut(s)	1528
AsuHPI	GGTGA	6 cut(s)	93, 256, 271, 433, 1000, 1742
AsuII	TTCGAA	1 cut(s)	965
AsuNHI	GCTAGC	1 cut(s)	1534
AvaII	GGWCC	3 cut(s)	627, 1458, 1562
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	766, 1489
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	6 cut(s)	1199, 1272, 1311, 1525, 1618, 1687
BccI	CCATC	7 cut(s)	280, 449, 811, 926, 1133, 1349, 1474
BceAI	ACGGC	3 cut(s)	205, 282, 564
BciT130I	CCWGG	4 cut(s)	301, 583, 1171, 1680
BciVI	GTATCC	1 cut(s)	1516
BclI	TGATCA	6 cut(s)	168, 261, 481, 727, 912, 1507
BcnI	CCSGG	1 cut(s)	1528
BcoDI	GTCTC	6 cut(s)	120, 180, 231, 373, 985, 1743
BfaI	CTAG	4 cut(s)	675, 1122, 1535, 1608
BfmI	CTRYAG	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	1516
BglII	AGATCT	1 cut(s)	1610
BisI	GCNGC	6 cut(s)	1188, 1286, 1300, 1539, 1632, 1676
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	6 cut(s)	1189, 1287, 1301, 1540, 1633, 1677
Bme1390I	CCNGG	5 cut(s)	301, 583, 1171, 1528, 1680
Bme18I	GGWCC	3 cut(s)	627, 1458, 1562
BmgBI	CACGTC	3 cut(s)	148, 241, 249
BmgT120I	GGNCC	3 cut(s)	627, 1458, 1562
BmiI	GGNNCC	3 cut(s)	470, 1459, 1563
BmrFI	CCNGG	5 cut(s)	301, 583, 1171, 1528, 1680
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	8 cut(s)	313, 498, 591, 684, 774, 937, 1481, 1561
BmtI	GCTAGC	1 cut(s)	1538
BmuI	ACTGGG	1 cut(s)	927
BpmI	CTGGAG	1 cut(s)	777
Bpu1102I	GCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	965
BpuEI	CTTGAG	3 cut(s)	58, 1042, 1466
BpuMI	CCSGG	1 cut(s)	1528
BsaHI	GRCGYC	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	985
BsaJI	CCNNGG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse118I	RCCGGY	2 cut(s)	418, 471
Bse1I	ACTGG	3 cut(s)	167, 829, 922
Bse3DI	GCAATG	4 cut(s)	566, 639, 730, 1741
BseBI	CCWGG	4 cut(s)	301, 583, 1171, 1680
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	9 cut(s)	291, 513, 619, 699, 789, 1211, 1440, 1505, 1840
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	4 cut(s)	566, 639, 730, 1741
BseMII	CTCAG	7 cut(s)	193, 222, 318, 368, 387, 756, 1533
BseNI	ACTGG	3 cut(s)	167, 829, 922
BsePI	GCGCGC	1 cut(s)	853
BseRI	GAGGAG	5 cut(s)	308, 481, 590, 774, 1334
BseXI	GCAGC	6 cut(s)	1199, 1272, 1311, 1525, 1618, 1687
BsgI	GTGCAG	1 cut(s)	1752
Bsh1236I	CGCG	3 cut(s)	464, 855, 857
BshFI	GGCC	3 cut(s)	152, 299, 581
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	6 cut(s)	119, 419, 472, 512, 605, 1527
BsiWI	CGTACG	1 cut(s)	270
BslFI	GGGAC	6 cut(s)	809, 875, 1071, 1338, 1471, 1575
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	6 cut(s)	120, 180, 231, 373, 985, 1743
BsmBI	CGTCTC	3 cut(s)	180, 231, 373
BsmFI	GGGAC	6 cut(s)	809, 875, 1071, 1338, 1471, 1575
BsmI	GAATGC	2 cut(s)	725, 1105
BsnI	GGCC	3 cut(s)	152, 299, 581
Bso31I	GGTCTC	1 cut(s)	985
Bsp119I	TTCGAA	1 cut(s)	965
Bsp1286I	GDGCHC	2 cut(s)	766, 1489
Bsp1407I	TGTACA	1 cut(s)	925
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	4 cut(s)	208, 282, 363, 630
BspANI	GGCC	3 cut(s)	152, 299, 581
BspCNI	CTCAG	7 cut(s)	192, 223, 319, 369, 388, 755, 1534
BspFNI	CGCG	3 cut(s)	464, 855, 857
BspLI	GGNNCC	3 cut(s)	470, 1459, 1563
BspMI	ACCTGC	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	1538
BspPI	GGATC	1 cut(s)	1150
BspQI	GCTCTTC	1 cut(s)	1494
BspT104I	TTCGAA	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	985
BsrDI	GCAATG	4 cut(s)	566, 639, 730, 1741
BsrFI	RCCGGY	2 cut(s)	418, 471
BsrGI	TGTACA	1 cut(s)	925
BsrI	ACTGG	3 cut(s)	167, 829, 922
BssAI	RCCGGY	2 cut(s)	418, 471
BssECI	CCNNGG	1 cut(s)	354
BssHII	GCGCGC	1 cut(s)	853
BssNI	GRCGYC	1 cut(s)	1060
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	4 cut(s)	301, 583, 1171, 1680
Bst4CI	ACNGT	4 cut(s)	134, 259, 541, 1090
Bst6I	CTCTTC	1 cut(s)	1494
BstACI	GRCGYC	1 cut(s)	1060
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstAUI	TGTACA	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	965
BstC8I	GCNNGC	7 cut(s)	139, 208, 473, 855, 1297, 1536, 1576
BstF5I	GGATG	9 cut(s)	291, 513, 619, 699, 789, 1211, 1440, 1505, 1840
BstFNI	CGCG	3 cut(s)	464, 855, 857
BstHHI	GCGC	3 cut(s)	559, 855, 857
BstMAI	GTCTC	6 cut(s)	120, 180, 231, 373, 985, 1743
BstMWI	GCNNNNNNNGC	5 cut(s)	189, 638, 761, 1193, 1493
BstNI	CCWGG	4 cut(s)	301, 583, 1171, 1680
BstNSI	RCATGY	4 cut(s)	11, 802, 1299, 1718
BstSCI	CCNGG	5 cut(s)	299, 581, 1169, 1526, 1678
BstSFI	CTRYAG	1 cut(s)	130
BstUI	CGCG	3 cut(s)	464, 855, 857
BstV1I	GCAGC	6 cut(s)	1199, 1272, 1311, 1525, 1618, 1687
BstX2I	RGATCY	1 cut(s)	1610
BstYI	RGATCY	1 cut(s)	1610
BsuI	GTATCC	1 cut(s)	1516
BsuRI	GGCC	3 cut(s)	152, 299, 581
BtrI	CACGTC	3 cut(s)	148, 241, 249
BtsCI	GGATG	9 cut(s)	291, 513, 619, 699, 789, 1211, 1440, 1505, 1840
BtsIMutI	CAGTG	2 cut(s)	139, 915
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	7 cut(s)	139, 208, 473, 855, 1297, 1536, 1576
CfoI	GCGC	3 cut(s)	559, 855, 857
Cfr10I	RCCGGY	2 cut(s)	418, 471
Cfr13I	GGNCC	3 cut(s)	627, 1458, 1562
Csp6I	GTAC	6 cut(s)	60, 271, 460, 926, 1105, 1811
CviAII	CATG	9 cut(s)	8, 85, 799, 900, 1202, 1296, 1304, 1519, 1715
CviQI	GTAC	6 cut(s)	60, 271, 460, 926, 1105, 1811
DraI	TTTAAA	2 cut(s)	849, 1554
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	1494
EarI	CTCTTC	1 cut(s)	1494
Ecl136II	GAGCTC	1 cut(s)	764
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	2 cut(s)	766, 1489
Eco31I	GGTCTC	1 cut(s)	985
Eco47I	GGWCC	3 cut(s)	627, 1458, 1562
Eco53kI	GAGCTC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	1445
EcoICRI	GAGCTC	1 cut(s)	764
EcoRII	CCWGG	4 cut(s)	299, 581, 1169, 1678
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	2 cut(s)	766, 1489
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	3 cut(s)	180, 231, 373
FaeI	CATG	9 cut(s)	11, 88, 802, 903, 1205, 1299, 1307, 1522, 1718
FaqI	GGGAC	6 cut(s)	809, 875, 1071, 1338, 1471, 1575
FatI	CATG	9 cut(s)	7, 84, 798, 899, 1201, 1295, 1303, 1518, 1714
FauI	CCCGC	3 cut(s)	215, 275, 356
FbaI	TGATCA	6 cut(s)	168, 261, 481, 727, 912, 1507
Fnu4HI	GCNGC	6 cut(s)	1188, 1286, 1300, 1539, 1632, 1676
FokI	GGATG	9 cut(s)	298, 520, 626, 706, 796, 1218, 1427, 1512, 1847
FriOI	GRGCYC	2 cut(s)	766, 1489
Fsp4HI	GCNGC	6 cut(s)	1188, 1286, 1300, 1539, 1632, 1676
FspBI	CTAG	4 cut(s)	675, 1122, 1535, 1608
GlaI	GCGC	3 cut(s)	558, 854, 856
GluI	GCNGC	6 cut(s)	1188, 1286, 1300, 1539, 1632, 1676
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	3 cut(s)	152, 299, 581
HapII	CCGG	6 cut(s)	119, 419, 472, 512, 605, 1527
HhaI	GCGC	3 cut(s)	559, 855, 857
Hin1I	GRCGYC	1 cut(s)	1060
Hin1II	CATG	9 cut(s)	11, 88, 802, 903, 1205, 1299, 1307, 1522, 1718
Hin6I	GCGC	3 cut(s)	557, 853, 855
HinP1I	GCGC	3 cut(s)	557, 853, 855
HindIII	AAGCTT	1 cut(s)	1547
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	6 cut(s)	119, 419, 472, 512, 605, 1527
HphI	GGTGA	6 cut(s)	93, 256, 271, 433, 1000, 1742
Hpy166II	GTNNAC	2 cut(s)	252, 627
Hpy188I	TCNGA	4 cut(s)	145, 745, 837, 1074
Hpy188III	TCNNGA	7 cut(s)	37, 172, 651, 767, 1021, 1096, 1775
Hpy8I	GTNNAC	2 cut(s)	252, 627
Hpy99I	CGWCG	3 cut(s)	149, 224, 259
HpyAV	CCTTC	4 cut(s)	696, 813, 1420, 1654
HpyCH4III	ACNGT	4 cut(s)	134, 259, 541, 1090
HpyCH4IV	ACGT	5 cut(s)	147, 240, 248, 273, 1060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	189, 638, 761, 1193, 1493
HpySE526I	ACGT	5 cut(s)	147, 240, 248, 273, 1060
Hsp92I	GRCGYC	1 cut(s)	1060
Hsp92II	CATG	9 cut(s)	11, 88, 802, 903, 1205, 1299, 1307, 1522, 1718
HspAI	GCGC	3 cut(s)	557, 853, 855
KroI	GCCGGC	1 cut(s)	471
KroNI	GCCGGC	1 cut(s)	473
Ksp22I	TGATCA	6 cut(s)	168, 261, 481, 727, 912, 1507
LguI	GCTCTTC	1 cut(s)	1494
LmnI	GCTCC	3 cut(s)	146, 468, 761
Lsp1109I	GCAGC	6 cut(s)	1199, 1272, 1311, 1525, 1618, 1687
LweI	GCATC	8 cut(s)	313, 498, 591, 684, 774, 937, 1481, 1561
MaeI	CTAG	4 cut(s)	675, 1122, 1535, 1608
MaeII	ACGT	5 cut(s)	147, 240, 248, 273, 1060
MaeIII	GTNAC	6 cut(s)	244, 820, 1034, 1270, 1514, 1580
MboII	GAAGA	9 cut(s)	343, 898, 956, 1138, 1148, 1388, 1481, 1810, 1850
MfeI	CAATTG	1 cut(s)	1247
MflI	RGATCY	1 cut(s)	1610
MhlI	GDGCHC	2 cut(s)	766, 1489
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	6 cut(s)	1221, 1247, 1477, 1618, 1698, 1848
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	5 cut(s)	168, 178, 183, 471, 1670
Mox20I	TGGCCA	1 cut(s)	152
Mph1103I	ATGCAT	1 cut(s)	952
MroNI	GCCGGC	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	5 cut(s)	387, 848, 1224, 1553, 1647
MslI	CAYNNNNRTG	1 cut(s)	1206
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	6 cut(s)	119, 419, 472, 512, 605, 1527
MspR9I	CCNGG	5 cut(s)	301, 583, 1171, 1528, 1680
MunI	CAATTG	1 cut(s)	1247
Mva1269I	GAATGC	2 cut(s)	725, 1105
MvaI	CCWGG	4 cut(s)	301, 583, 1171, 1680
MvnI	CGCG	3 cut(s)	464, 855, 857
MwoI	GCNNNNNNNGC	5 cut(s)	189, 638, 761, 1193, 1493
NaeI	GCCGGC	1 cut(s)	473
NciI	CCSGG	1 cut(s)	1528
NgoMIV	GCCGGC	1 cut(s)	471
NheI	GCTAGC	1 cut(s)	1534
NlaIII	CATG	9 cut(s)	11, 88, 802, 903, 1205, 1299, 1307, 1522, 1718
NlaIV	GGNNCC	3 cut(s)	470, 1459, 1563
NmeAIII	GCCGAG	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	4 cut(s)	11, 802, 1299, 1718
NspV	TTCGAA	1 cut(s)	965
PaeI	GCATGC	1 cut(s)	1299
PauI	GCGCGC	1 cut(s)	853
PciI	ACATGT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	1494
PcsI	WCGNNNNNNNCGW	1 cut(s)	812
PctI	GAATGC	2 cut(s)	725, 1105
PdiI	GCCGGC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	108
Pfl23II	CGTACG	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	1169
PkrI	GCNGC	6 cut(s)	1189, 1287, 1301, 1540, 1633, 1677
PscI	ACATGT	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	766
Psp6I	CCWGG	4 cut(s)	299, 581, 1169, 1678
PspGI	CCWGG	4 cut(s)	299, 581, 1169, 1678
PspLI	CGTACG	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	470, 1459, 1563
PspPI	GGNCC	3 cut(s)	627, 1458, 1562
PsrI	GAACNNNNNNTAC	2 cut(s)	1097, 1129
PsuI	RGATCY	1 cut(s)	1610
PteI	GCGCGC	1 cut(s)	853
RsaI	GTAC	6 cut(s)	61, 272, 461, 927, 1106, 1812
RsaNI	GTAC	6 cut(s)	60, 271, 460, 926, 1105, 1811
RseI	CAYNNNNRTG	1 cut(s)	1206
SacI	GAGCTC	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	1494
SaqAI	TTAA	5 cut(s)	387, 848, 1224, 1553, 1647
SatI	GCNGC	6 cut(s)	1188, 1286, 1300, 1539, 1632, 1676
Sau96I	GGNCC	3 cut(s)	627, 1458, 1562
ScrFI	CCNGG	5 cut(s)	301, 583, 1171, 1528, 1680
SduI	GDGCHC	2 cut(s)	766, 1489
SfaNI	GCATC	8 cut(s)	313, 498, 591, 684, 774, 937, 1481, 1561
SfcI	CTRYAG	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	965
SinI	GGWCC	3 cut(s)	627, 1458, 1562
SmiMI	CAYNNNNRTG	1 cut(s)	1206
SmlI	CTYRAG	3 cut(s)	37, 1021, 1445
SmoI	CTYRAG	3 cut(s)	37, 1021, 1445
SphI	GCATGC	1 cut(s)	1299
Sse9I	AATT	6 cut(s)	1221, 1247, 1477, 1618, 1698, 1848
SsiI	CCGC	4 cut(s)	208, 282, 363, 630
SspMI	CTAG	4 cut(s)	675, 1122, 1535, 1608
SstI	GAGCTC	1 cut(s)	766
StyD4I	CCNGG	5 cut(s)	299, 581, 1169, 1526, 1678
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	134, 259, 541, 1090
TaiI	ACGT	5 cut(s)	150, 243, 251, 276, 1063
TaqI	TCGA	4 cut(s)	219, 965, 1145, 1411
TasI	AATT	6 cut(s)	1221, 1247, 1477, 1618, 1698, 1848
TatI	WGTACW	1 cut(s)	925
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	5 cut(s)	387, 848, 1224, 1553, 1647
Tru9I	TTAA	5 cut(s)	387, 848, 1224, 1553, 1647
TscAI	CASTG	2 cut(s)	139, 922
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	6 cut(s)	1187, 1285, 1299, 1538, 1631, 1675
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	6 cut(s)	29, 684, 957, 1251, 1667, 1851
TspGWI	ACGGA	2 cut(s)	47, 397
TspRI	CASTG	2 cut(s)	139, 922
VpaK11BI	GGWCC	3 cut(s)	627, 1458, 1562
XceI	RCATGY	4 cut(s)	11, 802, 1299, 1718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	4 cut(s)	675, 1122, 1535, 1608
ZraI	GACGTC	1 cut(s)	1061
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.