Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006819

Physical Location & Seq

Genomic Coordinates Reverse (-)

12413367 .. 12417628

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGTCTGCAAATGGGATTACTTCCGAGCATGAGAGTATTGCTATTGAGGAAAAACATGTGGACATGCCAGTACCGGATTTGAACAAGGATGGTAAGAATGATAGTAATGTAGAAGTTCATGCCGCGAATGGAATATCTGAACCTGGAACAAAAGATGAAGGCATCAACTCTTCTGGAGTTGCAGTTGAAGCCTCTGCAACTGTTCCGCCTGGTAAAAATTCGAAAACCATGAAGGATCCTCATGCTCCGAACAATGGTTTTTCAAAGAGCAAACTGGCCAAGGATAAACCTAACTTGAAAGGCATAACTCAGATTCCTCGTAACCAGAGGGCAATACTTTCTCAGAGCCTTTCTTTCCCATCAAGAGGATCTCGTGGAGATCCTATGAAGAAGAGCATTGATGCGAACCCAGTGAAAGCAGTAGCCAAACATGCTCGAGGAAATGCAACCAAAGCTGAGGCCCATTTTTCAGTTTCTCGCTTGAATCCAAATAGGCGTGCATCCACAGGAGTGTATTCAAAGGAAGAGAACACAACTGGTGGAGCTTCCCTTAAGAGGACTTCTTTAGCAGCAATACCTAGCATTAGATGCTCTTCATCTGGGAAGCCTGGTTCTGTGAATACATCTGCTAATAGCCCATCTAATGTGATCCGAGCAGTTGATCAAAGTTTAAATCCTGTAAAAACAACTCTGCCAATCAAAGAGGATGATGATGCTCATTCCATTGCTTCAAGTACTACGCCAAGTGGACGGCGGAGCAGTGGTTCTTTTGCCTTCAGGTTGGATGAACGTGCGGAGAAACGGAAGGAGTTCTTTGACAAACTAGAAGAGAAGATACAGGCTAAGGAAGCAGAAAAAAATAACTCACAGGCAAAATCGAAGGAAAGCCAAGAAGCAGAGATCAAGAAACTAAGGAAGAGCCTAACATTCAAGGCAGCACCCATGCCAAGTTTCTACAAAGAGCCTCTTCCAAAAGTTGAACTAAAGAAGATACCAACTACTCGTGCAAAATCTCCCAAGCTTGGAAGGAACAAGAGCTCCATTTCTTCATTGAACAACTCTTCCGAAGGTGGTGGGGCGTGTCTTAGCCCTCGTCTGAATCAAGAACTGAATAACTCAAAGAAAGCATTAAAGACTAGAAGCGAAAAAGATGTCATAGACTCAAAGAAGCCTATTAGGAAGTCCCACAGCAGGCTTCATTCTCAGGAAAATGTTGCTACCAAAGATGAAGCAAAATCTGTTAAGTCCCCACCAAAGGCTATTGGAGAAGAAAGAAAATACCAGAAAACATGCACCACAGAAACAGAAGAAGGTCAGGATCAATCTGGGCTTCTTTCTGAGTGCAAAGAGAAGATAGAGTCTGAAGTGAATGTTGCTGAGATCGAAGAACCAGTCCTCAGTGCACCTACTCCCGATATCATGCCTCATGAAGTTAGCATTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

484

Amino Acids

52.11

Weight (kDa)

9.45

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35880 AT2G35880 AT2G35880
fragaria_vesca	FvH4_6g20850 FvH4_6g20850 FvH4_6g20850
malus_domestica	MD12G1044500.v1.1 MD14G1043400.v1.1
prunus_persica	Prupe.7G090700_v2.0.a1
pyrus_communis	pycom12g03830 pycom14g03690
rosa_chinensis	RchiOBHm_Chr3g0477191
rosa_laevigata	RLG00000023738
rosa_multiflora	Rmu_co8371101.1_g000001 Rmu_sc0029334.1_g000001 Rmu_sc0038241.1_g000001
rosa_roxburghii	Rroxscaffold_6G00404340 Rroxscaffold_6G00404840
rosa_rugosa	Rorug03G0158600 Rorug03G0158700
rosa_samantha	Rh3AG209100 Rh3BG242600 Rh3CG236800 Rh3DG235600
rosa_wichuraiana	Rw3G019060 Rw3G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	126, 209, 757, 797
AclWI	GGATC	6 cut(s)	233, 246, 377, 379, 646, 1329
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	763, 1386
AfaI	GTAC	2 cut(s)	75, 739
AfiI	CCNNNNNNNGG	6 cut(s)	257, 368, 558, 1025, 1194, 1258
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	58
AjnI	CCWGG	3 cut(s)	145, 211, 610
AjuI	GAANNNNNNNTTGG	1 cut(s)	1425
AleI	CACNNNNGTG	1 cut(s)	512
AloI	GAACNNNNNNTCC	8 cut(s)	598, 630, 751, 783, 1025, 1049, 1057, 1081
AluBI	AGCT	5 cut(s)	458, 548, 1024, 1041, 1448
AluI	AGCT	5 cut(s)	458, 548, 1024, 1041, 1448
Alw21I	GWGCWC	2 cut(s)	1043, 1408
Alw44I	GTGCAC	1 cut(s)	1404
AlwI	GGATC	6 cut(s)	233, 246, 377, 379, 646, 1329
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	2 cut(s)	279, 462
ApaLI	GTGCAC	1 cut(s)	1404
ApeKI	GCWGC	2 cut(s)	572, 938
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	4 cut(s)	1140, 1172, 1380, 1412
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	438
BaeGI	GKGCMC	1 cut(s)	1408
BalI	TGGCCA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	1043
BarI	GAAGNNNNNNTAC	2 cut(s)	822, 854
BauI	CACGAG	2 cut(s)	375, 1005
Bbv12I	GWGCWC	2 cut(s)	1043, 1408
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	584, 950
BccI	CCATC	3 cut(s)	86, 370, 649
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	3 cut(s)	147, 213, 612
BclI	TGATCA	1 cut(s)	664
BfaI	CTAG	3 cut(s)	582, 827, 1140
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	3 cut(s)	126, 573, 939
BlsI	GCNGC	3 cut(s)	127, 574, 940
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	3 cut(s)	147, 213, 612
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	3 cut(s)	147, 213, 612
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	5 cut(s)	174, 394, 512, 581, 706
BmuI	ACTGGG	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	459, 846
Bpu14I	TTCGAA	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 751, 781, 1025, 1055
Bsc4I	CCNNNNNNNGG	6 cut(s)	257, 368, 558, 1025, 1194, 1258
Bse1I	ACTGG	5 cut(s)	71, 282, 413, 544, 1394
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	147, 213, 612
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	4 cut(s)	97, 503, 715, 793
BseLI	CCNNNNNNNGG	6 cut(s)	257, 368, 558, 1025, 1194, 1258
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	7 cut(s)	326, 359, 450, 1220, 1332, 1371, 1414
BseNI	ACTGG	5 cut(s)	71, 282, 413, 544, 1394
BseSI	GKGCMC	1 cut(s)	1408
BseXI	GCAGC	2 cut(s)	584, 950
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	281, 464
BsiHKAI	GWGCWC	2 cut(s)	1043, 1408
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	1171, 1234
BslI	CCNNNNNNNGG	6 cut(s)	257, 368, 558, 1025, 1194, 1258
BsmFI	GGGAC	2 cut(s)	1171, 1234
BsnI	GGCC	2 cut(s)	281, 464
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	1043, 1408
Bsp143I	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
BspACI	CCGC	4 cut(s)	126, 209, 757, 797
BspANI	GGCC	2 cut(s)	281, 464
BspCNI	CTCAG	7 cut(s)	325, 358, 451, 1219, 1333, 1372, 1413
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	6 cut(s)	233, 246, 377, 379, 646, 1329
BspQI	GCTCTTC	3 cut(s)	389, 601, 914
BspT104I	TTCGAA	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	5 cut(s)	71, 282, 413, 544, 1394
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
BssSI	CACGAG	2 cut(s)	375, 1005
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	2 cut(s)	375, 1005
Bst2UI	CCWGG	3 cut(s)	147, 213, 612
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	8 cut(s)	178, 389, 522, 601, 825, 914, 975, 1069
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	501, 1196
BstF5I	GGATG	4 cut(s)	97, 503, 715, 793
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	8 cut(s)	241, 374, 385, 654, 667, 906, 1324, 1386
BstMBI	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 434, 455, 591, 851
BstNI	CCWGG	3 cut(s)	147, 213, 612
BstNSI	RCATGY	4 cut(s)	62, 70, 437, 1296
BstSCI	CCNGG	3 cut(s)	145, 211, 610
BstSLI	GKGCMC	1 cut(s)	1408
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	584, 950
BstX2I	RGATCY	3 cut(s)	238, 371, 382
BstYI	RGATCY	3 cut(s)	238, 371, 382
BsuRI	GGCC	2 cut(s)	281, 464
BtsCI	GGATG	4 cut(s)	97, 503, 715, 793
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	420, 769, 1408
Cac8I	GCNNGC	2 cut(s)	501, 1196
CciI	TCATGA	1 cut(s)	1429
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	74, 738
CviQI	GTAC	2 cut(s)	74, 738
DpnI	GATC	8 cut(s)	240, 373, 384, 653, 666, 905, 1323, 1385
DpnII	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
DraI	TTTAAA	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	8 cut(s)	178, 389, 522, 601, 825, 914, 975, 1069
EarI	CTCTTC	8 cut(s)	178, 389, 522, 601, 825, 914, 975, 1069
EciI	GGCGGA	2 cut(s)	198, 772
Ecl136II	GAGCTC	1 cut(s)	1041
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	1420
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	2 cut(s)	763, 1386
Eco88I	CYCGRG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	1041
EcoRII	CCWGG	3 cut(s)	145, 211, 610
EcoRV	GATATC	1 cut(s)	1420
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	1043
ErhI	CCWWGG	1 cut(s)	282
FalI	AAGNNNNNCTT	4 cut(s)	800, 832, 954, 986
FaqI	GGGAC	2 cut(s)	1171, 1234
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	126, 573, 939
FokI	GGATG	4 cut(s)	104, 490, 722, 800
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	3 cut(s)	126, 573, 939
FspBI	CTAG	3 cut(s)	582, 827, 1140
GluI	GCNGC	3 cut(s)	126, 573, 939
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	281, 464
HapII	CCGG	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	6 cut(s)	5, 316, 487, 1102, 1163, 1361
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	64, 752, 1406
Hpy188III	TCNNGA	8 cut(s)	177, 366, 907, 1106, 1208, 1319, 1415, 1430
Hpy8I	GTNNAC	3 cut(s)	64, 752, 1406
HpyAV	CCTTC	8 cut(s)	155, 229, 787, 802, 877, 1023, 1064, 1307
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	9 cut(s)	11, 185, 200, 449, 503, 1010, 1296, 1347, 1406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 434, 455, 591, 851
HpySE526I	ACGT	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
LguI	GCTCTTC	3 cut(s)	389, 601, 914
LmnI	GCTCC	5 cut(s)	253, 545, 759, 1046, 1445
Lsp1109I	GCAGC	2 cut(s)	584, 950
LweI	GCATC	5 cut(s)	174, 394, 512, 581, 706
MaeI	CTAG	3 cut(s)	582, 827, 1140
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	8 cut(s)	240, 373, 384, 653, 666, 905, 1323, 1385
MboI	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
MflI	RGATCY	3 cut(s)	238, 371, 382
MhlI	GDGCHC	2 cut(s)	1043, 1408
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	14, 1157, 1370
MmeI	TCCRAC	1 cut(s)	765
Mox20I	TGGCCA	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	5 cut(s)	555, 674, 1133, 1245, 1450
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	3 cut(s)	147, 213, 612
MvaI	CCWGG	3 cut(s)	147, 213, 612
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	191, 434, 455, 591, 851
NdeII	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	4 cut(s)	62, 70, 437, 1296
NspV	TTCGAA	1 cut(s)	224
OliI	CACNNNNGTG	1 cut(s)	512
PaeR7I	CTCGAG	1 cut(s)	438
PagI	TCATGA	1 cut(s)	1429
PciI	ACATGT	1 cut(s)	58
PciSI	GCTCTTC	3 cut(s)	389, 601, 914
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	3 cut(s)	316, 487, 1102
PkrI	GCNGC	3 cut(s)	127, 574, 940
PleI	GAGTC	3 cut(s)	13, 1157, 1369
PpsI	GAGTC	3 cut(s)	13, 1157, 1369
PscI	ACATGT	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	1043
Psp6I	CCWGG	3 cut(s)	145, 211, 610
PspGI	CCWGG	3 cut(s)	145, 211, 610
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	463
PspXI	VCTCGAGB	1 cut(s)	438
PsuI	RGATCY	3 cut(s)	238, 371, 382
RsaI	GTAC	2 cut(s)	75, 739
RsaNI	GTAC	2 cut(s)	74, 738
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	1043
SapI	GCTCTTC	3 cut(s)	389, 601, 914
SaqAI	TTAA	5 cut(s)	555, 674, 1133, 1245, 1450
SatI	GCNGC	3 cut(s)	126, 573, 939
Sau3AI	GATC	8 cut(s)	238, 371, 382, 651, 664, 903, 1321, 1383
Sau96I	GGNCC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	3 cut(s)	14, 1157, 1370
ScrFI	CCNGG	3 cut(s)	147, 213, 612
SduI	GDGCHC	2 cut(s)	1043, 1408
SfaNI	GCATC	5 cut(s)	174, 394, 512, 581, 706
Sfr274I	CTCGAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	438, 554
SmoI	CTYRAG	2 cut(s)	438, 554
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	4 cut(s)	126, 209, 757, 797
SspMI	CTAG	3 cut(s)	582, 827, 1140
SstI	GAGCTC	1 cut(s)	1043
StyD4I	CCNGG	3 cut(s)	145, 211, 610
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	4 cut(s)	224, 439, 881, 1386
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	737
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	316, 487, 1102
Tru1I	TTAA	5 cut(s)	555, 674, 1133, 1245, 1450
Tru9I	TTAA	5 cut(s)	555, 674, 1133, 1245, 1450
TscAI	CASTG	3 cut(s)	420, 769, 1408
TseI	GCWGC	2 cut(s)	572, 938
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	3 cut(s)	420, 769, 1408
Vha464I	CTTAAG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	1404
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	4 cut(s)	62, 70, 437, 1296
XhoI	CTCGAG	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	3 cut(s)	582, 827, 1140
ZrmI	AGTACT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.