Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8371101.1

Orthogroup ID

OG0006819

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1123

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8371101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

tctacgatattctgtattcagaagcactacacctggtgggcggaggagcagtggttctgcattttccttcaggttggatgaacgtgctgaaaaaaggaaggagttctttacaaagctagaagagaagatacaggctaaggaagcagaaaaaaataattcgcaagcaaaatcaaaggaaaaccaggaagcagagatcaagcaactgaggaagagcctgacatttagggcagctcccatgccaactttctataaagagcctcctccaaaaattgaaataaagaagataccgaccacacgtcccatatctccaaagcttggaaggcacaagaactccatttcttcattgaacaacccctcagaaggtggtgggacgtgtcttagcccgcgtctgaatcgagaacagaacaattcaaacaaagggttaaaggcaacaggtgaaaaagatgtcacagaatcaaagaagcctatcaggaagtcccaacatcggcttcattctcaggaaaatgtggctgctaaagctgaaggaaagccctgtaagtcacaactgaaagtggtcagcaaagaagaaaaagaaagcccgaaggcatgcactggagagacagaagaaagctttcaagaccaatctgaacatctttctgaatgcaaagataagatagagcctgaagtgagtgttgaccagaccaaagaaccagttgtcagtgcagttcctgctcctgagatcatgcctcaagaagttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

246

Amino Acids

27.56

Weight (kDa)

9.42

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35880 AT2G35880 AT2G35880
fragaria_vesca	FvH4_6g20850 FvH4_6g20850 FvH4_6g20850
malus_domestica	MD12G1044500.v1.1 MD14G1043400.v1.1
prunus_persica	Prupe.7G090700_v2.0.a1
pyrus_communis	pycom12g03830 pycom14g03690
rosa_chinensis	RchiOBHm_Chr3g0477191
rosa_laevigata	RLG00000023738
rosa_multiflora	Rmu_co8371101.1_g000001 Rmu_sc0029334.1_g000001 Rmu_sc0038241.1_g000001
rosa_roxburghii	Rroxscaffold_6G00404340 Rroxscaffold_6G00404840
rosa_rugosa	Rorug03G0158600 Rorug03G0158700
rosa_samantha	Rh3AG209100 Rh3BG242600 Rh3CG236800 Rh3DG235600
rosa_wichuraiana	Rw3G019060 Rw3G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	315
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	41, 384
AcuI	CTGAAG	3 cut(s)	53, 541, 682
AdeI	CACNNNGTG	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	315, 360, 484
AflIII	ACRYGT	2 cut(s)	294, 372
AgsI	TTSAA	4 cut(s)	273, 347, 412, 615
AhdI	GACNNNNNGTC	1 cut(s)	295
AjiI	CACGTC	2 cut(s)	297, 373
AjnI	CCWGG	2 cut(s)	32, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	472, 504
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	116, 231, 314, 519, 610
AluI	AGCT	5 cut(s)	116, 231, 314, 519, 610
Alw26I	GTCTC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	228, 510
Asp700I	GAANNNNTTC	2 cut(s)	102, 610
AsuHPI	GGTGA	1 cut(s)	447
BarI	GAAGNNNNNNTAC	2 cut(s)	112, 144
BbvI	GCAGC	2 cut(s)	240, 497
BciT130I	CCWGG	2 cut(s)	34, 183
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	229, 511
BlsI	GCNGC	2 cut(s)	230, 512
Bme1390I	CCNGG	2 cut(s)	34, 183
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgBI	CACGTC	2 cut(s)	297, 373
BmrFI	CCNGG	2 cut(s)	34, 183
BpmI	CTGGAG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	712
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 38, 65, 68, 315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 360, 484
Bse1I	ACTGG	2 cut(s)	596, 690
BseBI	CCWGG	2 cut(s)	34, 183
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	315, 360, 484
BseMII	CTCAG	4 cut(s)	195, 370, 510, 706
BseNI	ACTGG	2 cut(s)	596, 690
BseRI	GAGGAG	2 cut(s)	59, 250
BseXI	GCAGC	2 cut(s)	240, 497
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	386
BslFI	GGGAC	3 cut(s)	283, 383, 461
BslI	CCNNNNNNNGG	3 cut(s)	315, 360, 484
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	3 cut(s)	283, 383, 461
BsmI	GAATGC	1 cut(s)	645
Bsp143I	GATC	2 cut(s)	193, 718
BspACI	CCGC	2 cut(s)	41, 384
BspCNI	CTCAG	4 cut(s)	196, 369, 509, 707
BspFNI	CGCG	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	596, 690
BssMI	GATC	2 cut(s)	193, 718
Bst2UI	CCWGG	2 cut(s)	34, 183
Bst6I	CTCTTC	2 cut(s)	115, 204
BstAPI	GCANNNNNTGC	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	163, 384, 587
BstDEI	CTNAG	6 cut(s)	136, 204, 356, 378, 496, 715
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	2 cut(s)	196, 721
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	2 cut(s)	193, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 320, 516, 708
BstNI	CCWGG	2 cut(s)	34, 183
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	32, 181
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	240, 497
BtrI	CACGTC	2 cut(s)	297, 373
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	3 cut(s)	56, 589, 704
Cac8I	GCNNGC	3 cut(s)	163, 384, 587
CaiI	CAGNNNCTG	1 cut(s)	708
CseI	GACGC	1 cut(s)	375
CsiI	ACCWGGT	1 cut(s)	32
CviAII	CATG	3 cut(s)	236, 586, 722
DdeI	CTNAG	6 cut(s)	136, 204, 356, 378, 496, 715
DpnI	GATC	2 cut(s)	195, 720
DpnII	GATC	2 cut(s)	193, 718
DraIII	CACNNNGTG	1 cut(s)	36
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	115, 204
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	2 cut(s)	115, 204
EciI	GGCGGA	1 cut(s)	56
Eco57I	CTGAAG	3 cut(s)	53, 541, 682
EcoRII	CCWGG	2 cut(s)	32, 181
FaeI	CATG	3 cut(s)	239, 589, 725
FaiI	YATR	5 cut(s)	237, 250, 303, 587, 723
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	3 cut(s)	283, 383, 461
FatI	CATG	3 cut(s)	235, 585, 721
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	229, 511
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	229, 511
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	229, 511
GsuI	CTGGAG	1 cut(s)	613
HgaI	GACGC	1 cut(s)	375
Hin1II	CATG	3 cut(s)	239, 589, 725
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	2 cut(s)	312, 608
HinfI	GANTC	2 cut(s)	392, 453
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	5 cut(s)	21, 359, 391, 626, 638
Hpy188III	TCNNGA	6 cut(s)	396, 470, 498, 615, 714, 729
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	6 cut(s)	77, 92, 313, 354, 516, 575
HpyCH4IV	ACGT	3 cut(s)	83, 296, 372
HpyCH4V	TGCA	4 cut(s)	60, 589, 643, 702
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 320, 516, 708
HpyF3I	CTNAG	6 cut(s)	136, 204, 356, 378, 496, 715
HpySE526I	ACGT	3 cut(s)	83, 296, 372
Hsp92II	CATG	3 cut(s)	239, 589, 725
Kzo9I	GATC	2 cut(s)	193, 718
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	46, 236, 716
Lsp1109I	GCAGC	2 cut(s)	240, 497
MabI	ACCWGGT	1 cut(s)	32
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	3 cut(s)	83, 296, 372
MaeIII	GTNAC	2 cut(s)	446, 538
MalI	GATC	2 cut(s)	195, 720
MboI	GATC	2 cut(s)	193, 718
MboII	GAAGA	7 cut(s)	132, 137, 221, 293, 331, 576, 615
MluCI	AATT	3 cut(s)	155, 268, 407
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	37, 199, 268, 271, 365, 736
MroXI	GAANNNNTTC	2 cut(s)	102, 610
MseI	TTAA	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	34, 183
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	34, 183
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	141, 320, 516, 708
NdeII	GATC	2 cut(s)	193, 718
NlaIII	CATG	3 cut(s)	239, 589, 725
NmuCI	GTSAC	2 cut(s)	446, 538
NspI	RCATGY	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	645
PdmI	GAANNNNTTC	2 cut(s)	102, 610
PfeI	GAWTC	2 cut(s)	392, 453
PflMI	CCANNNNNTGG	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	230, 512
Psp6I	CCWGG	2 cut(s)	32, 181
PspGI	CCWGG	2 cut(s)	32, 181
PstNI	CAGNNNCTG	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	229, 511
Sau3AI	GATC	2 cut(s)	193, 718
ScrFI	CCNGG	2 cut(s)	34, 183
SexAI	ACCWGGT	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	3 cut(s)	155, 268, 407
SsiI	CCGC	2 cut(s)	41, 384
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	32, 181
TaiI	ACGT	3 cut(s)	86, 299, 375
TaqI	TCGA	1 cut(s)	395
TasI	AATT	3 cut(s)	155, 268, 407
TfiI	GAWTC	2 cut(s)	392, 453
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	56, 596, 704
TseFI	GTSAC	2 cut(s)	446, 538
TseI	GCWGC	2 cut(s)	228, 510
Tsp45I	GTSAC	2 cut(s)	446, 538
TspDTI	ATGAA	3 cut(s)	94, 331, 480
TspRI	CASTG	3 cut(s)	56, 596, 704
Van91I	CCANNNNNTGG	1 cut(s)	315
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	102, 610
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.