Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006819

Physical Location & Seq

Genomic Coordinates Forward (+)

3095233 .. 3097229

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03690.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAGAAGAGCATTGATGTGTACCCAGTGAAAACAGAAGTTAAACACGCCCGAGGAAATGCAACCAAGGCTGAGGCTCCCATTTCAGTTTCTCGTCTGAATAATCCAACTAGGCGTGCATCCACAGGAGTTCATTCAAAGGATGGGAACTCCACTGGTGGAGCTTCCATTAAGAGGACTTCTTTAGCATCAATACCCAGCATTAGATCCTCTCCACCTGGCAAGTCTGGTTCTGTGGATACATCCGTCAATAGCCCATCTGATGTGATCCGATCAGTTGATCAAAGTTTAAATGCTGTAAAAACAACTCTGCCAATCAAAGAGGATGATGATGCTCACTCCGTTGCTTCTACTACACCTAGTGGCCGGAGGATCAGCGCTTCTGGGTTTTCCTTCAGGTTGGAAGAACGTGCTGAAAAACGGAAGGAGTTTTTTACAAAGCTAGAAGAGAAGACACAGGCTAAGGAAGAAGAAAAAAATAACTCACAAGCAAAATCAAAGGAAAGTCAGGAAGCAGAGATCAAGCGACTAAGGAAGAGCCTGACGTTTAAGGCAGCGCCCATGCCAAGTTTCTATAAAGAGCCTCCCCCGAAAGTTGAACTCAAGAAGATTCCAACCACACGGCCAAAATCTCCGAAGCTTGGAAGGAACAAGAGCTCCATTTCTTCACCGAACAATTCTTCAGAAGTTGCTGGGGTGTCTCTTAGCCCACGTCTGAATCGAGAACTGAATAATTCAAAGAAAGGATTAAAGACTAAAAGCGAAAAGGACGTCATAGATCCAAAGAAGCCAGTTAAAAAGTCTCAAACTAGGCTTCATTCTCAGGAAACTGCTGCTACCAAAACCGAAGCAAAGGGTATCGAAGAAGAAACACACGACCAGAAAGCGTGCACTGGAAAAACTGAAGAAGCTCAGGACCAATCAGGGCATCTTTCCAAATTCAAAGATGAGATAGAGCCTGAAGCGAGTGATCGCCAGATCAAAGAACCAGTCCTCGGTGCACCTATCCCCGATCGATCATGCCCCATGAAGTTTCGGTTGGAGTTTAACGACGTACTTGTGATGCCGATGCATTGTGTTCATATGGTCTTGAAAGGTTTAAGTTGCATATTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

373

Amino Acids

40.85

Weight (kDa)

9.68

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35880 AT2G35880 AT2G35880
fragaria_vesca	FvH4_6g20850 FvH4_6g20850 FvH4_6g20850
malus_domestica	MD12G1044500.v1.1 MD14G1043400.v1.1
prunus_persica	Prupe.7G090700_v2.0.a1
pyrus_communis	pycom12g03830 pycom14g03690
rosa_chinensis	RchiOBHm_Chr3g0477191
rosa_laevigata	RLG00000023738
rosa_multiflora	Rmu_co8371101.1_g000001 Rmu_sc0029334.1_g000001 Rmu_sc0038241.1_g000001
rosa_roxburghii	Rroxscaffold_6G00404340 Rroxscaffold_6G00404840
rosa_rugosa	Rorug03G0158600 Rorug03G0158700
rosa_samantha	Rh3AG209100 Rh3BG242600 Rh3CG236800 Rh3DG235600
rosa_wichuraiana	Rw3G019060 Rw3G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	774
AclWI	GGATC	4 cut(s)	201, 262, 380, 773
AcoI	YGGCCR	2 cut(s)	364, 623
AcsI	RAATTY	1 cut(s)	938
AcuI	CTGAAG	4 cut(s)	379, 666, 924, 981
AcyI	GRCGYC	1 cut(s)	771
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	23, 1056
AfeI	AGCGCT	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	174, 641, 995
AgsI	TTSAA	5 cut(s)	138, 599, 738, 943, 1093
AjiI	CACGTC	1 cut(s)	713
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
AluBI	AGCT	5 cut(s)	164, 442, 640, 657, 911
AluI	AGCT	5 cut(s)	164, 442, 640, 657, 911
Alw21I	GWGCWC	3 cut(s)	659, 893, 1003
Alw26I	GTCTC	2 cut(s)	705, 807
Alw44I	GTGCAC	2 cut(s)	889, 999
AlwI	GGATC	4 cut(s)	201, 262, 380, 773
Ama87I	CYCGRG	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	379
AoxI	GGCC	2 cut(s)	364, 623
ApaLI	GTGCAC	2 cut(s)	889, 999
ApeKI	GCWGC	2 cut(s)	554, 833
ApoI	RAATTY	1 cut(s)	938
ArsI	GACNNNNNNTTYG	4 cut(s)	756, 788, 975, 1007
AspLEI	GCGC	2 cut(s)	380, 559
AspS9I	GGNCC	1 cut(s)	916
AsuHPI	GGTGA	1 cut(s)	660
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	2 cut(s)	893, 1003
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanII	GRGCYC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	3 cut(s)	659, 893, 1003
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	566, 820
BccI	CCATC	2 cut(s)	137, 265
BceAI	ACGGC	1 cut(s)	638
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	705, 807
BfaI	CTAG	4 cut(s)	111, 360, 443, 810
BfoI	RGCGCY	2 cut(s)	381, 560
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	555, 834
BlsI	GCNGC	2 cut(s)	556, 835
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	916
BmeT110I	CYCGRG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	916
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	6 cut(s)	128, 197, 322, 937, 1053, 1059
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	458
Bpu10I	CCTNAGC	3 cut(s)	72, 462, 912
BpuEI	CTTGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	1015
BsaHI	GRCGYC	1 cut(s)	771
BsaJI	CCNNGG	3 cut(s)	52, 66, 994
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 641, 995
Bse1I	ACTGG	5 cut(s)	26, 160, 791, 898, 989
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	1015
BseDI	CCNNGG	3 cut(s)	52, 66, 994
BseGI	GGATG	4 cut(s)	119, 148, 242, 331
BseLI	CCNNNNNNNGG	3 cut(s)	174, 641, 995
BseMII	CTCAG	3 cut(s)	63, 836, 926
BseNI	ACTGG	5 cut(s)	26, 160, 791, 898, 989
BseSI	GKGCMC	2 cut(s)	893, 1003
BseXI	GCAGC	2 cut(s)	566, 820
BseYI	CCCAGC	2 cut(s)	197, 692
Bsh1285I	CGRYCG	1 cut(s)	1015
BshFI	GGCC	2 cut(s)	366, 625
BshVI	ATCGAT	1 cut(s)	1015
BsiEI	CGRYCG	1 cut(s)	1015
BsiHKAI	GWGCWC	3 cut(s)	659, 893, 1003
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	174, 641, 995
BsmAI	GTCTC	2 cut(s)	705, 807
BsnI	GGCC	2 cut(s)	366, 625
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	659, 893, 1003
BspANI	GGCC	2 cut(s)	366, 625
BspCNI	CTCAG	3 cut(s)	64, 835, 925
BspDI	ATCGAT	1 cut(s)	1015
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	4 cut(s)	201, 262, 380, 773
BspQI	GCTCTTC	2 cut(s)	2, 530
BsrI	ACTGG	5 cut(s)	26, 160, 791, 898, 989
BssECI	CCNNGG	3 cut(s)	52, 66, 994
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	3 cut(s)	2, 441, 530
BstACI	GRCGYC	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	117, 889
BstDEI	CTNAG	6 cut(s)	72, 462, 530, 704, 822, 912
BstF5I	GGATG	4 cut(s)	119, 148, 242, 331
BstH2I	RGCGCY	2 cut(s)	381, 560
BstHHI	GCGC	2 cut(s)	380, 559
BstMAI	GTCTC	2 cut(s)	705, 807
BstMCI	CGRYCG	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	2 cut(s)	893, 1003
BstV1I	GCAGC	2 cut(s)	566, 820
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	206, 778
BstYI	RGATCY	2 cut(s)	206, 778
Bsu15I	ATCGAT	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	366, 625
BsuTUI	ATCGAT	1 cut(s)	1015
BtrI	CACGTC	1 cut(s)	713
BtsCI	GGATG	4 cut(s)	119, 148, 242, 331
BtsIMutI	CAGTG	3 cut(s)	33, 153, 891
Cac8I	GCNNGC	2 cut(s)	117, 889
CfoI	GCGC	2 cut(s)	380, 559
Cfr13I	GGNCC	1 cut(s)	916
ClaI	ATCGAT	1 cut(s)	1015
Csp6I	GTAC	2 cut(s)	22, 1055
CviAII	CATG	3 cut(s)	562, 1020, 1027
CviQI	GTAC	2 cut(s)	22, 1055
DdeI	CTNAG	6 cut(s)	72, 462, 530, 704, 822, 912
DraI	TTTAAA	1 cut(s)	291
DraIII	CACNNNGTG	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	364, 623
Eam1104I	CTCTTC	3 cut(s)	2, 441, 530
EarI	CTCTTC	3 cut(s)	2, 441, 530
Ecl136II	GAGCTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	916
Eco47III	AGCGCT	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	657
Eco57I	CTGAAG	4 cut(s)	379, 666, 924, 981
Eco88I	CYCGRG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	1074
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	565, 1023, 1030
FaiI	YATR	8 cut(s)	563, 576, 776, 1021, 1028, 1083, 1085, 1109
FatI	CATG	3 cut(s)	561, 1019, 1026
FauNDI	CATATG	1 cut(s)	1083
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	555, 834
FokI	GGATG	4 cut(s)	106, 155, 229, 338
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	2 cut(s)	555, 834
FspBI	CTAG	4 cut(s)	111, 360, 443, 810
GlaI	GCGC	2 cut(s)	379, 558
GluI	GCNGC	2 cut(s)	555, 834
GsaI	CCCAGC	2 cut(s)	201, 696
HaeII	RGCGCY	2 cut(s)	381, 560
HaeIII	GGCC	2 cut(s)	366, 625
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	2 cut(s)	380, 559
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	3 cut(s)	565, 1023, 1030
Hin6I	GCGC	2 cut(s)	378, 557
HinP1I	GCGC	2 cut(s)	378, 557
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	2 cut(s)	610, 718
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	660
Hpy166II	GTNNAC	3 cut(s)	22, 891, 1001
Hpy188I	TCNGA	6 cut(s)	99, 262, 272, 636, 685, 717
Hpy188III	TCNNGA	6 cut(s)	509, 604, 722, 824, 914, 1090
Hpy8I	GTNNAC	3 cut(s)	22, 891, 1001
Hpy99I	CGWCG	1 cut(s)	1055
HpyAV	CCTTC	3 cut(s)	403, 418, 639
HpyCH4IV	ACGT	5 cut(s)	409, 545, 712, 771, 1053
HpyCH4V	TGCA	6 cut(s)	62, 119, 891, 1001, 1072, 1107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	6 cut(s)	72, 462, 530, 704, 822, 912
HpySE526I	ACGT	5 cut(s)	409, 545, 712, 771, 1053
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	3 cut(s)	565, 1023, 1030
HspAI	GCGC	2 cut(s)	378, 557
Ksp22I	TGATCA	1 cut(s)	280
LguI	GCTCTTC	2 cut(s)	2, 530
LmnI	GCTCC	3 cut(s)	82, 161, 662
Lsp1109I	GCAGC	2 cut(s)	566, 820
LweI	GCATC	6 cut(s)	128, 197, 322, 937, 1053, 1059
MaeI	CTAG	4 cut(s)	111, 360, 443, 810
MaeII	ACGT	5 cut(s)	409, 545, 712, 771, 1053
MflI	RGATCY	2 cut(s)	206, 778
MhlI	GDGCHC	3 cut(s)	659, 893, 1003
MluCI	AATT	3 cut(s)	676, 733, 938
MmeI	TCCRAC	4 cut(s)	131, 381, 638, 1020
MnlI	CCTC	8 cut(s)	47, 67, 168, 220, 316, 363, 594, 1004
Mph1103I	ATGCAT	1 cut(s)	1074
MseI	TTAA	8 cut(s)	42, 171, 290, 549, 749, 795, 1047, 1100
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeI	CATATG	1 cut(s)	1083
NlaIII	CATG	3 cut(s)	565, 1023, 1030
NlaIV	GGNNCC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	1074
PciSI	GCTCTTC	2 cut(s)	2, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	610, 718
PkrI	GCNGC	2 cut(s)	556, 835
Ple19I	CGATCG	1 cut(s)	1015
Psp124BI	GAGCTC	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	197, 692
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	206, 778
PvuI	CGATCG	1 cut(s)	1015
RsaI	GTAC	2 cut(s)	23, 1056
RsaNI	GTAC	2 cut(s)	22, 1055
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	659
SapI	GCTCTTC	2 cut(s)	2, 530
SaqAI	TTAA	8 cut(s)	42, 171, 290, 549, 749, 795, 1047, 1100
SatI	GCNGC	2 cut(s)	555, 834
Sau96I	GGNCC	1 cut(s)	916
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	3 cut(s)	659, 893, 1003
SfaNI	GCATC	6 cut(s)	128, 197, 322, 937, 1053, 1059
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	3 cut(s)	676, 733, 938
SspMI	CTAG	4 cut(s)	111, 360, 443, 810
SstI	GAGCTC	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	5 cut(s)	412, 548, 715, 774, 1056
TaqI	TCGA	3 cut(s)	721, 861, 1015
TasI	AATT	3 cut(s)	676, 733, 938
TfiI	GAWTC	2 cut(s)	610, 718
Tru1I	TTAA	8 cut(s)	42, 171, 290, 549, 749, 795, 1047, 1100
Tru9I	TTAA	8 cut(s)	42, 171, 290, 549, 749, 795, 1047, 1100
TscAI	CASTG	3 cut(s)	33, 160, 898
TseI	GCWGC	2 cut(s)	554, 833
TspDTI	ATGAA	5 cut(s)	17, 122, 806, 1043, 1070
TspGWI	ACGGA	3 cut(s)	235, 331, 436
TspRI	CASTG	3 cut(s)	33, 160, 898
VneI	GTGCAC	2 cut(s)	889, 999
VpaK11BI	GGWCC	1 cut(s)	916
XapI	RAATTY	1 cut(s)	938
XspI	CTAG	4 cut(s)	111, 360, 443, 810
ZraI	GACGTC	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.