Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029334.1

Orthogroup ID

OG0006819

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1191

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 740 bp

tgtagaagaatcagtaccggatttgaacattgaaggaaagaatgttgatgctaatatagaagttcctaccacgaatggagtgtctgaacctgtaagcaaaggtgaaggcattaacccttcaggaggtgcagttgaagttgccgcaagtgttcctcctggtaaaaattcaaaaacaaaaaaggatcctcatgctccaaacaatggtgtttcaaagggaaggttggccaaggataaacccagtgtgaaaggtgcagctccagtttctcgtacacaaagggcaatactttctcagagtctttcgttcccagccaggggagctcgtgttgatgctatgaagaagagcattgatgtttatccagtgaaaacagaagccaaacgcactcgagggaatgcaaccaaagctgaggccccttttccatcttctcatttgaatcatcaaaataggcgtgcatccacaggaatacactcaaatgatgagaacaaagctgctggagcttcagttaggaggactactttagcatcaataactagtattagatcctctgcatcaatgaagtctggcactgtgagtaaacctgctaatagttcatatgatgtgacccgatcagttgggcagatcttaagtgctgtaaaaacaaccctgccaatcaaagaggatgatgatgctcattccattgcttcaagcactacacctggtgggcggaggagcagtggttctgcattttccttcaggttggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

246

Amino Acids

25.61

Weight (kDa)

10.06

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35880 AT2G35880 AT2G35880
fragaria_vesca	FvH4_6g20850 FvH4_6g20850 FvH4_6g20850
malus_domestica	MD12G1044500.v1.1 MD14G1043400.v1.1
prunus_persica	Prupe.7G090700_v2.0.a1
pyrus_communis	pycom12g03830 pycom14g03690
rosa_chinensis	RchiOBHm_Chr3g0477191
rosa_laevigata	RLG00000023738
rosa_multiflora	Rmu_co8371101.1_g000001 Rmu_sc0029334.1_g000001 Rmu_sc0038241.1_g000001
rosa_roxburghii	Rroxscaffold_6G00404340 Rroxscaffold_6G00404840
rosa_rugosa	Rorug03G0158600 Rorug03G0158700
rosa_samantha	Rh3AG209100 Rh3BG242600 Rh3CG236800 Rh3DG235600
rosa_wichuraiana	Rw3G019060 Rw3G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	2 cut(s)	142, 701
AclWI	GGATC	3 cut(s)	177, 190, 532
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	3 cut(s)	103, 481, 713
AdeI	CACNNNGTG	1 cut(s)	696
AfaI	GTAC	2 cut(s)	16, 269
AfiI	CCNNNNNNNGG	4 cut(s)	123, 201, 311, 312
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	7 cut(s)	26, 33, 135, 169, 211, 431, 682
AhlI	ACTAGT	1 cut(s)	528
AjnI	CCWGG	3 cut(s)	155, 309, 692
AloI	GAACNNNNNNTCC	2 cut(s)	698, 730
AluBI	AGCT	5 cut(s)	255, 318, 402, 486, 495
AluI	AGCT	5 cut(s)	255, 318, 402, 486, 495
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	3 cut(s)	177, 190, 532
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	223, 406
ApeKI	GCWGC	2 cut(s)	252, 486
ApoI	RAATTY	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	264, 473
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	3 cut(s)	157, 311, 694
BcuI	ACTAGT	1 cut(s)	528
BfaI	CTAG	1 cut(s)	529
BfrI	CTTAAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	3 cut(s)	142, 253, 487
BlsI	GCNGC	3 cut(s)	143, 254, 488
Bme1390I	CCNGG	3 cut(s)	157, 311, 694
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	184, 409
BmrFI	CCNGG	3 cut(s)	157, 311, 694
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	6 cut(s)	38, 317, 459, 528, 555, 653
BmuI	ACTGGG	1 cut(s)	232
BpmI	CTGGAG	2 cut(s)	241, 511
Bpu10I	CCTNAGC	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	226, 310
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 201, 311, 312
Bse1I	ACTGG	3 cut(s)	238, 258, 357
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	157, 311, 694
BseDI	CCNNGG	2 cut(s)	226, 310
BseGI	GGATG	2 cut(s)	450, 662
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	4 cut(s)	123, 201, 311, 312
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	2 cut(s)	303, 394
BseNI	ACTGG	3 cut(s)	238, 258, 357
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	2 cut(s)	264, 473
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	2 cut(s)	148, 271
BshFI	GGCC	2 cut(s)	225, 408
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	123, 201, 311, 312
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	225, 408
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	182, 537, 603, 616
BspACI	CCGC	2 cut(s)	142, 701
BspANI	GGCC	2 cut(s)	225, 408
BspCNI	CTCAG	2 cut(s)	302, 395
BspLI	GGNNCC	2 cut(s)	184, 409
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	3 cut(s)	177, 190, 532
BspQI	GCTCTTC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	238, 258, 357
BssECI	CCNNGG	2 cut(s)	226, 310
BssMI	GATC	4 cut(s)	182, 537, 603, 616
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	157, 311, 694
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	289, 403
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	450, 662
BstKTI	GATC	4 cut(s)	185, 540, 606, 619
BstMBI	GATC	4 cut(s)	182, 537, 603, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 399, 492
BstNI	CCWGG	3 cut(s)	157, 311, 694
BstSCI	CCNGG	3 cut(s)	155, 309, 692
BstV1I	GCAGC	2 cut(s)	264, 473
BstX2I	RGATCY	3 cut(s)	182, 537, 616
BstYI	RGATCY	3 cut(s)	182, 537, 616
BsuRI	GGCC	2 cut(s)	225, 408
BtsCI	GGATG	2 cut(s)	450, 662
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	4 cut(s)	245, 364, 562, 716
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	407
CsiI	ACCWGGT	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	15, 268
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	9 cut(s)	225, 255, 309, 318, 372, 402, 408, 486, 495
CviKI_1	RGCY	9 cut(s)	225, 255, 309, 318, 372, 402, 408, 486, 495
CviQI	GTAC	2 cut(s)	15, 268
DdeI	CTNAG	2 cut(s)	289, 403
DpnI	GATC	4 cut(s)	184, 539, 605, 618
DpnII	GATC	4 cut(s)	182, 537, 603, 616
DraIII	CACNNNGTG	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	716
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	3 cut(s)	103, 481, 713
Eco88I	CYCGRG	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	3 cut(s)	155, 309, 692
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	192
FaiI	YATR	5 cut(s)	57, 190, 333, 590, 592
FatI	CATG	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	590
Fnu4HI	GCNGC	3 cut(s)	142, 253, 487
FokI	GGATG	2 cut(s)	437, 669
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	142, 253, 487
FspBI	CTAG	1 cut(s)	529
GluI	GCNGC	3 cut(s)	142, 253, 487
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	241, 511
HaeIII	GGCC	2 cut(s)	225, 408
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	192
HinfI	GANTC	3 cut(s)	9, 293, 431
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	270, 573
Hpy188I	TCNGA	2 cut(s)	86, 292
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	270, 573
HpyAV	CCTTC	5 cut(s)	27, 99, 127, 211, 737
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	129, 252, 393, 450, 546, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 399, 492
HpyF3I	CTNAG	2 cut(s)	289, 403
Hsp92II	CATG	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	182, 537, 603, 616
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	5 cut(s)	197, 260, 315, 492, 706
Lsp1109I	GCAGC	2 cut(s)	264, 473
LweI	GCATC	6 cut(s)	38, 317, 459, 528, 555, 653
MabI	ACCWGGT	1 cut(s)	692
MaeI	CTAG	1 cut(s)	529
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	184, 539, 605, 618
MboI	GATC	4 cut(s)	182, 537, 603, 616
MboII	GAAGA	4 cut(s)	18, 347, 350, 412
MflI	RGATCY	3 cut(s)	182, 537, 616
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	9 cut(s)	117, 163, 196, 378, 398, 499, 551, 647, 697
Mox20I	TGGCCA	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	2 cut(s)	112, 621
MslI	CAYNNNNRTG	1 cut(s)	469
Msp20I	TGGCCA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	157, 311, 694
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	3 cut(s)	157, 311, 694
MwoI	GCNNNNNNNGC	3 cut(s)	315, 399, 492
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	4 cut(s)	182, 537, 603, 616
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	2 cut(s)	184, 409
NmuCI	GTSAC	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	9, 431
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	143, 254, 488
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	3 cut(s)	155, 309, 692
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	155, 309, 692
PspN4I	GGNNCC	2 cut(s)	184, 409
PspPI	GGNCC	1 cut(s)	407
PspXI	VCTCGAGB	1 cut(s)	382
PsuI	RGATCY	3 cut(s)	182, 537, 616
RsaI	GTAC	2 cut(s)	16, 269
RsaNI	GTAC	2 cut(s)	15, 268
RseI	CAYNNNNRTG	1 cut(s)	469
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	112, 621
SatI	GCNGC	3 cut(s)	142, 253, 487
Sau3AI	GATC	4 cut(s)	182, 537, 603, 616
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	157, 311, 694
SduI	GDGCHC	1 cut(s)	320
SexAI	ACCWGGT	1 cut(s)	692
SfaNI	GCATC	6 cut(s)	38, 317, 459, 528, 555, 653
Sfr274I	CTCGAG	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	469
SmlI	CTYRAG	2 cut(s)	382, 620
SmoI	CTYRAG	2 cut(s)	382, 620
SpeI	ACTAGT	1 cut(s)	528
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	142, 701
SspMI	CTAG	1 cut(s)	529
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	155, 309, 692
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	9, 431
Tru1I	TTAA	2 cut(s)	112, 621
Tru9I	TTAA	2 cut(s)	112, 621
TscAI	CASTG	4 cut(s)	245, 364, 569, 716
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	252, 486
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	348, 567, 577
TspRI	CASTG	4 cut(s)	245, 364, 569, 716
Van91I	CCANNNNNTGG	1 cut(s)	201
Vha464I	CTTAAG	1 cut(s)	620
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	382
XspI	CTAG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.