Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006819

Physical Location & Seq

Genomic Coordinates Reverse (-)

13101185 .. 13102657

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0158700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTAATAATTACTTGTGTCTGCTAGGAGCCATAGATAGTCTCTGGTTTCACCAAACCATTCTTTTCCCAGAACCCATTTCATTACTTGGCCACGAATCCACTGAAACACCTCAAGACTCCATCGCAAATAGTTCTTTCACGTACCCATCATCCAGCTTGGTCTCCTTAGCAGTTGCAGATGAAGAAGTCTCATCAAATTTCTCAACCATGTTAGAACCGGAAATCCCATCACCGGGTACACCAGATTCACCAGAAATTAGTACTCCACAGGATTATGAGAGGAAAAGACCAACAAGATTAGATATTCTGGCCAACAGATTGATGTTAATTCGCTCTCAGTCATCATCCCCAATATCAAAGGATCAGAGAAGTCCTCGAAAAAACAGAAACTCTGGCTTATTAACAAGGAAGCTGGAGAAATCCATGAGCATGAGAAGCTTGGGGGAGCTAGAACTTGAAGAACTAAAGGGGTTAATGGACCTGGGCTTCACTTTCGAGAAAGAGAACTTAAACCCACGCATGATGAGCTTAGTACCTGGATTGCAGAGACTTGGAGTTGGAGTTCATAGTAACAACAAAAGGATACAGAACTCTAGCGATAATGATGATGATCAGGTAGTTGCAGCTAAAGGTGATGATGGTGTTGTTGATGAGGATGTTGAAGTTGAGAGGCCATATTTATCGGAGGCGTGGCTTATAAAGAGGCCTGATTCGCCGCTGCTGAATCTAAGGTTGCCAACCAGAGTGTCCTCTGCTGCTGACATGAAGAAGCATCTGAAGTCCTGGGCCAGAACTGTTGCTTCTGAAATTCAACAGGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

275

Amino Acids

30.71

Weight (kDa)

5.1

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35880 AT2G35880 AT2G35880
fragaria_vesca	FvH4_6g20850 FvH4_6g20850 FvH4_6g20850
malus_domestica	MD12G1044500.v1.1 MD14G1043400.v1.1
prunus_persica	Prupe.7G090700_v2.0.a1
pyrus_communis	pycom12g03830 pycom14g03690
rosa_chinensis	RchiOBHm_Chr3g0477191
rosa_laevigata	RLG00000023738
rosa_multiflora	Rmu_co8371101.1_g000001 Rmu_sc0029334.1_g000001 Rmu_sc0038241.1_g000001
rosa_roxburghii	Rroxscaffold_6G00404340 Rroxscaffold_6G00404840
rosa_rugosa	Rorug03G0158600 Rorug03G0158700
rosa_samantha	Rh3AG209100 Rh3BG242600 Rh3CG236800 Rh3DG235600
rosa_wichuraiana	Rw3G019060 Rw3G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
AciI	CCGC	1 cut(s)	719
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	2 cut(s)	91, 312
AcsI	RAATTY	2 cut(s)	199, 810
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	4 cut(s)	146, 241, 265, 537
AfiI	CCNNNNNNNGG	2 cut(s)	235, 236
AgsI	TTSAA	3 cut(s)	461, 665, 815
AjnI	CCWGG	3 cut(s)	483, 538, 785
AloI	GAACNNNNNNTCC	4 cut(s)	210, 242, 549, 581
AluBI	AGCT	6 cut(s)	159, 415, 441, 451, 531, 629
AluI	AGCT	6 cut(s)	159, 415, 441, 451, 531, 629
Alw26I	GTCTC	4 cut(s)	47, 169, 196, 544
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	5 cut(s)	91, 312, 674, 707, 789
ApeKI	GCWGC	3 cut(s)	626, 721, 758
ApoI	RAATTY	2 cut(s)	199, 810
AspS9I	GGNCC	2 cut(s)	481, 789
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	4 cut(s)	44, 225, 243, 647
AvaII	GGWCC	1 cut(s)	481
BalI	TGGCCA	2 cut(s)	93, 314
BbvI	GCAGC	3 cut(s)	638, 708, 745
BccI	CCATC	4 cut(s)	131, 157, 238, 635
BciT130I	CCWGG	3 cut(s)	485, 540, 787
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	4 cut(s)	47, 169, 196, 544
BfaI	CTAG	3 cut(s)	26, 452, 597
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	4 cut(s)	627, 719, 722, 759
BlsI	GCNGC	4 cut(s)	628, 720, 723, 760
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	4 cut(s)	237, 485, 540, 787
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	481, 789
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	4 cut(s)	237, 485, 540, 787
BmsI	GCATC	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	484, 786
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 236
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	3 cut(s)	485, 540, 787
BseDI	CCNNGG	2 cut(s)	484, 786
BseGI	GGATG	3 cut(s)	152, 347, 664
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	235, 236
BseMII	CTCAG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	638, 708, 745
BshFI	GGCC	5 cut(s)	93, 314, 676, 709, 791
BsiSI	CCGG	2 cut(s)	221, 236
BslI	CCNNNNNNNGG	2 cut(s)	235, 236
BsmAI	GTCTC	4 cut(s)	47, 169, 196, 544
BsnI	GGCC	5 cut(s)	93, 314, 676, 709, 791
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	364, 613
BspACI	CCGC	1 cut(s)	719
BspANI	GGCC	5 cut(s)	93, 314, 676, 709, 791
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	484, 786
BssMI	GATC	2 cut(s)	364, 613
Bst2UI	CCWGG	3 cut(s)	485, 540, 787
Bst4CI	ACNGT	1 cut(s)	799
BstBAI	YACGTR	1 cut(s)	144
BstDEI	CTNAG	4 cut(s)	169, 339, 532, 731
BstF5I	GGATG	3 cut(s)	152, 347, 664
BstKTI	GATC	2 cut(s)	367, 616
BstMAI	GTCTC	4 cut(s)	47, 169, 196, 544
BstMBI	GATC	2 cut(s)	364, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	438, 528, 715
BstNI	CCWGG	3 cut(s)	485, 540, 787
BstSCI	CCNGG	4 cut(s)	235, 483, 538, 785
BstV1I	GCAGC	3 cut(s)	638, 708, 745
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	93, 314, 676, 709, 791
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	152, 347, 664
BtsIMutI	CAGTG	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	481, 789
Csp6I	GTAC	4 cut(s)	145, 240, 264, 536
CviAII	CATG	5 cut(s)	211, 427, 433, 523, 766
CviQI	GTAC	4 cut(s)	145, 240, 264, 536
DdeI	CTNAG	4 cut(s)	169, 339, 532, 731
DpnI	GATC	2 cut(s)	366, 615
DpnII	GATC	2 cut(s)	364, 613
EaeI	YGGCCR	2 cut(s)	91, 312
Eco147I	AGGCCT	1 cut(s)	709
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	483, 538, 785
FaeI	CATG	5 cut(s)	214, 430, 436, 526, 769
FatI	CATG	5 cut(s)	210, 426, 432, 522, 765
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	627, 719, 722, 759
FokI	GGATG	3 cut(s)	139, 334, 671
Fsp4HI	GCNGC	4 cut(s)	627, 719, 722, 759
FspBI	CTAG	3 cut(s)	26, 452, 597
GluI	GCNGC	4 cut(s)	627, 719, 722, 759
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	5 cut(s)	93, 314, 676, 709, 791
HapII	CCGG	2 cut(s)	221, 236
Hin1II	CATG	5 cut(s)	214, 430, 436, 526, 769
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	6 cut(s)	98, 119, 248, 713, 727, 821
HpaII	CCGG	2 cut(s)	221, 236
HphI	GGTGA	4 cut(s)	44, 225, 243, 647
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	4 cut(s)	369, 688, 780, 808
Hpy188III	TCNNGA	2 cut(s)	116, 499
Hpy8I	GTNNAC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	179, 547, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	438, 528, 715
HpyF3I	CTNAG	4 cut(s)	169, 339, 532, 731
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	5 cut(s)	214, 430, 436, 526, 769
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	364, 613
LmnI	GCTCC	2 cut(s)	29, 448
Lsp1109I	GCAGC	3 cut(s)	638, 708, 745
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	26, 452, 597
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	2 cut(s)	366, 615
MboI	GATC	2 cut(s)	364, 613
MboII	GAAGA	3 cut(s)	197, 473, 781
MlsI	TGGCCA	2 cut(s)	93, 314
MluCI	AATT	5 cut(s)	10, 199, 258, 330, 810
MluNI	TGGCCA	2 cut(s)	93, 314
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	123, 276, 387, 649, 666, 682, 699, 763
Mox20I	TGGCCA	2 cut(s)	93, 314
MscI	TGGCCA	2 cut(s)	93, 314
MseI	TTAA	5 cut(s)	329, 404, 476, 512, 826
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	2 cut(s)	93, 314
MspA1I	CMGCKG	1 cut(s)	721
MspI	CCGG	2 cut(s)	221, 236
MspR9I	CCNGG	4 cut(s)	237, 485, 540, 787
MvaI	CCWGG	3 cut(s)	485, 540, 787
MwoI	GCNNNNNNNGC	3 cut(s)	438, 528, 715
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	364, 613
NlaIII	CATG	5 cut(s)	214, 430, 436, 526, 769
NlaIV	GGNNCC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	709
PfeI	GAWTC	5 cut(s)	98, 248, 713, 727, 821
PkrI	GCNGC	4 cut(s)	628, 720, 723, 760
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	701
Psp6I	CCWGG	3 cut(s)	483, 538, 785
PspGI	CCWGG	3 cut(s)	483, 538, 785
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	481, 789
RsaI	GTAC	4 cut(s)	146, 241, 265, 537
RsaNI	GTAC	4 cut(s)	145, 240, 264, 536
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	329, 404, 476, 512, 826
SatI	GCNGC	4 cut(s)	627, 719, 722, 759
Sau3AI	GATC	2 cut(s)	364, 613
Sau96I	GGNCC	2 cut(s)	481, 789
ScaI	AGTACT	1 cut(s)	265
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	4 cut(s)	237, 485, 540, 787
SfaNI	GCATC	1 cut(s)	784
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	10, 199, 258, 330, 810
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	719
SspMI	CTAG	3 cut(s)	26, 452, 597
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	4 cut(s)	235, 483, 538, 785
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	379, 498
TasI	AATT	5 cut(s)	10, 199, 258, 330, 810
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	5 cut(s)	98, 248, 713, 727, 821
Tru1I	TTAA	5 cut(s)	329, 404, 476, 512, 826
Tru9I	TTAA	5 cut(s)	329, 404, 476, 512, 826
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	3 cut(s)	626, 721, 758
TspDTI	ATGAA	4 cut(s)	72, 198, 557, 782
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	199, 810
XspI	CTAG	3 cut(s)	26, 452, 597
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.