Prupe.7G095200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013698
Physical Location & Seq
Forward (+)
12768914 .. 12770330
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G095200.1

Sequence Viewer

Length: 735 bp
ATGGTGGAGGTCCCCAGAGCTAGAGGCGTCTCGTTTCCGATCGTCTTCTCCGACGGCGAGACCGAGACCGATATCGGAAACGTCGTCGTTAACGATGCCCTAGAGTTCAAGCTGTTCCTTTCGCTCCTGAGCAACAAGATCGGAATCTCGCCGCACCAGTTCACGGTCTTCCTCTCCTCGCCGGACACCCGTCGGCGAATCCCCATCACCGGCAAGGTCAACTTCGGAGCGATTTCTCGCGAGAAGAACTGCTTCTTTCTCGTGGAGCTAAAGCGGTCGAGACGCGAGAAGCGGCGTTCCAAGAATAGCCAGATTCAACACCACCACCCCCAAGATTTTCAAGAAAACGAGTACGACAACACGGCGTCGTTCGGAGCTCACAATCCAGTCAACAAGAGCCTCAGTCTTGAGAACGTGATGCTATTGAGGCGGGGTATGGAGATCGAAAACGTCACCGGTTTGGGTTTTCCGTTTGCGGGTCGGGTCGAGTACGAGAATCGGATCAGGGAGTTGCAGATGGAGAAGGAGAGATATTTGATGAACATGGGCCTGGGAAGATCCGATGGGTTTGGGCTTGGGCCGGGCCGGGGAGGTGGCGTAGCGGTGGTGTGCGAGGAGTGTTCAAGAGCTAAAGCGATGGGGAGAGAAGTCGGATTCCACTGGTGCGCTTACGACGCTGTGACTTTCGGGTTCAGGTCTCCGGCGGGTCCGATTTCCCGACCCGCCAAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.33

Weight (kDa)

9.27

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 240, 285
AciI CCGC 8 cut(s) 152, 274, 292, 430, 476, 602, 704, 723
AclWI GGATC 2 cut(s) 509, 552
AcyI GRCGYC 2 cut(s) 27, 365
AfaI GTAC 2 cut(s) 353, 491
AfiI CCNNNNNNNGG 6 cut(s) 163, 209, 476, 587, 728, 729
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 109, 317, 341, 624
AjnI CCWGG 1 cut(s) 549
AluBI AGCT 5 cut(s) 20, 112, 268, 377, 629
AluI AGCT 5 cut(s) 20, 112, 268, 377, 629
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 5 cut(s) 34, 53, 59, 274, 702
AlwI GGATC 2 cut(s) 509, 552
AoxI GGCC 3 cut(s) 547, 578, 583
AsiGI ACCGGT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 5 cut(s) 10, 547, 578, 583, 707
AsuC2I CCSGG 2 cut(s) 582, 587
AsuHPI GGTGA 2 cut(s) 199, 445
AvaII GGWCC 2 cut(s) 10, 707
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 37, 160
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 4 cut(s) 212, 511, 557, 631
BceAI ACGGC 2 cut(s) 70, 378
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 551
BcnI CCSGG 2 cut(s) 582, 587
BcoDI GTCTC 5 cut(s) 34, 53, 59, 274, 702
BfaI CTAG 2 cut(s) 21, 101
BisI GCNGC 2 cut(s) 152, 293
BlsI GCNGC 2 cut(s) 153, 294
Bme1390I CCNGG 3 cut(s) 551, 582, 587
Bme18I GGWCC 2 cut(s) 10, 707
BmgT120I GGNCC 5 cut(s) 10, 547, 578, 583, 707
BmiI GGNNCC 2 cut(s) 12, 708
BmrFI CCNGG 3 cut(s) 551, 582, 587
BmsI GCATC 2 cut(s) 85, 408
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 37, 160
Bpu10I CCTNAGC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 582, 587
BsaBI GATNNNNATC 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 27, 365
BsaI GGTCTC 3 cut(s) 53, 59, 702
BsaJI CCNNGG 2 cut(s) 550, 586
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 209, 476, 587, 728, 729
Bse118I RCCGGY 2 cut(s) 209, 455
Bse1I ACTGG 3 cut(s) 157, 386, 665
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 550, 586
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 6 cut(s) 163, 209, 476, 587, 728, 729
BseMII CTCAG 2 cut(s) 119, 415
BseNI ACTGG 3 cut(s) 157, 386, 665
BseRI GAGGAG 2 cut(s) 166, 629
Bsh1236I CGCG 2 cut(s) 240, 285
Bsh1285I CGRYCG 2 cut(s) 42, 278
BshFI GGCC 3 cut(s) 549, 580, 585
BshTI ACCGGT 1 cut(s) 455
BsiEI CGRYCG 2 cut(s) 42, 278
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 6 cut(s) 182, 210, 456, 581, 586, 701
BslI CCNNNNNNNGG 6 cut(s) 163, 209, 476, 587, 728, 729
BsmAI GTCTC 5 cut(s) 34, 53, 59, 274, 702
BsmBI CGTCTC 2 cut(s) 34, 274
BsnI GGCC 3 cut(s) 549, 580, 585
Bso31I GGTCTC 3 cut(s) 53, 59, 702
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 5 cut(s) 39, 138, 441, 501, 557
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 8 cut(s) 152, 274, 292, 430, 476, 602, 704, 723
BspANI GGCC 3 cut(s) 549, 580, 585
BspCNI CTCAG 2 cut(s) 120, 414
BspFNI CGCG 2 cut(s) 240, 285
BspLI GGNNCC 2 cut(s) 12, 708
BspPI GGATC 2 cut(s) 509, 552
BspTNI GGTCTC 3 cut(s) 53, 59, 702
BsrFI RCCGGY 2 cut(s) 209, 455
BsrI ACTGG 3 cut(s) 157, 386, 665
BssAI RCCGGY 2 cut(s) 209, 455
BssECI CCNNGG 2 cut(s) 550, 586
BssMI GATC 5 cut(s) 39, 138, 441, 501, 557
BssNI GRCGYC 2 cut(s) 27, 365
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 2 cut(s) 27, 365
BstDEI CTNAG 2 cut(s) 128, 401
BstFNI CGCG 2 cut(s) 240, 285
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 5 cut(s) 42, 141, 444, 504, 560
BstMAI GTCTC 5 cut(s) 34, 53, 59, 274, 702
BstMBI GATC 5 cut(s) 39, 138, 441, 501, 557
BstMCI CGRYCG 2 cut(s) 42, 278
BstMWI GCNNNNNNNGC 2 cut(s) 427, 674
BstNI CCWGG 1 cut(s) 551
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 3 cut(s) 549, 580, 585
BstUI CGCG 2 cut(s) 240, 285
BstV2I GAAGAC 2 cut(s) 37, 160
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 3 cut(s) 549, 580, 585
BtgZI GCGATG 1 cut(s) 650
BtsIMutI CAGTG 1 cut(s) 658
BtuMI TCGCGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 2 cut(s) 209, 455
Cfr13I GGNCC 5 cut(s) 10, 547, 578, 583, 707
CseI GACGC 4 cut(s) 16, 291, 354, 683
Csp6I GTAC 2 cut(s) 352, 490
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 1 cut(s) 544
CviQI GTAC 2 cut(s) 352, 490
DdeI CTNAG 2 cut(s) 128, 401
DpnI GATC 5 cut(s) 41, 140, 443, 503, 559
DpnII GATC 5 cut(s) 39, 138, 441, 501, 557
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 3 cut(s) 53, 59, 702
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 10, 707
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 549
EcoRV GATATC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 379
Esp3I CGTCTC 2 cut(s) 34, 274
FaeI CATG 1 cut(s) 547
FaiI YATR 2 cut(s) 437, 545
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 236, 268
FatI CATG 1 cut(s) 543
FauI CCCGC 4 cut(s) 423, 469, 697, 730
Fnu4HI GCNGC 2 cut(s) 152, 293
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 152, 293
FspBI CTAG 2 cut(s) 21, 101
GlaI GCGC 1 cut(s) 667
GluI GCNGC 2 cut(s) 152, 293
HaeIII GGCC 3 cut(s) 549, 580, 585
HapII CCGG 6 cut(s) 182, 210, 456, 581, 586, 701
HgaI GACGC 4 cut(s) 16, 291, 354, 683
HhaI GCGC 1 cut(s) 668
Hin1I GRCGYC 2 cut(s) 27, 365
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 3 cut(s) 91, 220, 391
HindII GTYRAC 3 cut(s) 91, 220, 391
HinfI GANTC 5 cut(s) 144, 198, 313, 496, 654
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 6 cut(s) 182, 210, 456, 581, 586, 701
HphI GGTGA 2 cut(s) 199, 445
Hpy166II GTNNAC 4 cut(s) 91, 162, 220, 391
Hpy188III TCNNGA 7 cut(s) 127, 239, 279, 341, 407, 624, 717
Hpy8I GTNNAC 4 cut(s) 91, 162, 220, 391
Hpy99I CGWCG 6 cut(s) 56, 86, 89, 195, 370, 677
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 3 cut(s) 81, 414, 450
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 427, 674
HpyF3I CTNAG 2 cut(s) 128, 401
HpySE526I ACGT 3 cut(s) 81, 414, 450
Hsp92I GRCGYC 2 cut(s) 27, 365
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 666
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 5 cut(s) 39, 138, 441, 501, 557
LmnI GCTCC 4 cut(s) 129, 227, 265, 374
LweI GCATC 2 cut(s) 85, 408
MaeI CTAG 2 cut(s) 21, 101
MaeII ACGT 3 cut(s) 81, 414, 450
MaeIII GTNAC 2 cut(s) 451, 679
MalI GATC 5 cut(s) 41, 140, 443, 503, 559
MboI GATC 5 cut(s) 39, 138, 441, 501, 557
MboII GAAGA 4 cut(s) 37, 160, 256, 567
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 75, 631
MnlI CCTC 7 cut(s) 17, 182, 187, 410, 420, 584, 607
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 90
MspI CCGG 6 cut(s) 182, 210, 456, 581, 586, 701
MspR9I CCNGG 3 cut(s) 551, 582, 587
MvaI CCWGG 1 cut(s) 551
MvnI CGCG 2 cut(s) 240, 285
MwoI GCNNNNNNNGC 2 cut(s) 427, 674
NciI CCSGG 2 cut(s) 582, 587
NdeII GATC 5 cut(s) 39, 138, 441, 501, 557
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 12, 708
NmuCI GTSAC 2 cut(s) 451, 679
NruI TCGCGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 4 cut(s) 48, 60, 81, 90
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 5 cut(s) 144, 198, 313, 496, 654
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 2 cut(s) 153, 294
Ple19I CGATCG 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 10
PshAI GACNNNNGTC 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 12, 708
PspPI GGNCC 5 cut(s) 10, 547, 578, 583, 707
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 557
PvuI CGATCG 1 cut(s) 42
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 2 cut(s) 353, 491
RsaNI GTAC 2 cut(s) 352, 490
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 152, 293
Sau3AI GATC 5 cut(s) 39, 138, 441, 501, 557
Sau96I GGNCC 5 cut(s) 10, 547, 578, 583, 707
ScrFI CCNGG 3 cut(s) 551, 582, 587
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 2 cut(s) 85, 408
SinI GGWCC 2 cut(s) 10, 707
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SsiI CCGC 8 cut(s) 152, 274, 292, 430, 476, 602, 704, 723
SspMI CTAG 2 cut(s) 21, 101
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 549, 580, 585
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 3 cut(s) 84, 417, 453
TaqI TCGA 3 cut(s) 278, 444, 486
TaqII GACCGA 2 cut(s) 77, 83
TauI GCSGC 2 cut(s) 154, 295
TfiI GAWTC 5 cut(s) 144, 198, 313, 496, 654
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 2 cut(s) 451, 679
Tsp45I GTSAC 2 cut(s) 451, 679
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 10, 707
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 21, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.