pycom03g00540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013698
Physical Location & Seq
Reverse (-)
438843 .. 439121
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00540.1

Sequence Viewer

Length: 279 bp
ATGTCATCTCGCCGGAGACAAGAGAGAGTAGAGATGATGGAGGGCGAAAGAGGCGTCTCGTTCCCTGTCGTCTTCTCCTACGATGAGACCGAGACCGATATCGGCGACCTCGTCGTTAACCCAAAGCTTGATTTCCCGCGGTTCCTGTCGGTTCTAAGCCACAAGATCAAAATCTTGCTGGGGCAGTTCACTGTTTTTCTATCCTCGCCGGAGACCAGCCAGCGAATCCCCATCACTGGCAAGGTCAACTTCAACACGATTTCCCCCGAGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.52

Weight (kDa)

6.57

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7138 PF23596 18 - 92 2.9e-29 Domain of unknown function (DUF7138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 139
AciI CCGC 2 cut(s) 137, 139
AcyI GRCGYC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 5 cut(s) 10, 61, 80, 86, 206
Ama87I CYCGRG 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
AvaI CYCGRG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 64
BccI CCATC 2 cut(s) 31, 239
BcoDI GTCTC 5 cut(s) 10, 61, 80, 86, 206
BmeT110I CYCGRG 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 3 cut(s) 80, 86, 206
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 137
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 13, 209
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 5 cut(s) 10, 61, 80, 86, 206
BsmBI CGTCTC 1 cut(s) 61
Bso31I GGTCTC 3 cut(s) 80, 86, 206
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 137, 139
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 143
BspTNI GGTCTC 3 cut(s) 80, 86, 206
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 5 cut(s) 10, 61, 80, 86, 206
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstUI CGCG 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 189, 234
Cac8I GCNNGC 1 cut(s) 221
Cfr42I CCGCGG 1 cut(s) 140
CseI GACGC 1 cut(s) 43
CviJI RGCY 3 cut(s) 127, 159, 219
CviKI_1 RGCY 3 cut(s) 127, 159, 219
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco31I GGTCTC 3 cut(s) 80, 86, 206
Eco32I GATATC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 61
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FauI CCCGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 182
HapII CCGG 2 cut(s) 13, 209
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 118, 247
HindII GTYRAC 2 cut(s) 118, 247
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 225
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 2 cut(s) 13, 209
Hpy166II GTNNAC 3 cut(s) 118, 189, 247
Hpy8I GTNNAC 3 cut(s) 118, 189, 247
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 118
KspI CCGCGG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 8 cut(s) 26, 78, 158, 164, 222, 222, 229, 233
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 64
MnlI CCTC 4 cut(s) 34, 44, 119, 214
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 2 cut(s) 13, 209
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 108
PfeI GAWTC 1 cut(s) 225
PflFI GACNNNGTC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 110
SacII CCGCGG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 165
SetI ASST 3 cut(s) 111, 129, 246
Sfr303I CCGCGG 1 cut(s) 140
SgrBI CCGCGG 1 cut(s) 140
SsiI CCGC 2 cut(s) 137, 139
TaaI ACNGT 1 cut(s) 193
TaqII GACCGA 2 cut(s) 104, 110
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 196, 241
TspRI CASTG 2 cut(s) 196, 241
Tth111I GACNNNGTC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.