Rh7BG133300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013698
Physical Location & Seq
Reverse (-)
9944039 .. 9944275
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG133300.1

Sequence Viewer

Length: 237 bp
ATGATGGAGGCCATCGGAGGCATCTCTTTTCCGGTCGTGTTCTGCGACGGCGAGAGCGAGTCGGAAATCGGAGACGTCGTGATTTACCCGGCGATGGAGTTCAAGCGGTTCCAAGCGGTTCTGAGCCAGAAGATCGGAATCTCACCGAACCAGTTCTCGGTGTTCATCTCCTCGCCGGAATCCCACCGGCGAATCCCCGTCACGAGCAAGATCAACTTCAGCGTGATCTGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.66

Weight (kDa)

5.68

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7138 PF23596 8 - 78 5.8e-35 Domain of unknown function (DUF7138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AciI CCGC 2 cut(s) 106, 116
AcuI CTGAAG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 94, 157
AgsI TTSAA 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 135
BauI CACGAG 1 cut(s) 202
BccI CCATC 2 cut(s) 20, 88
BceAI ACGGC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 157
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 137
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 94, 157
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 4 cut(s) 32, 89, 176, 187
BslI CCNNNNNNNGG 2 cut(s) 94, 157
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 132, 210, 225
BspACI CCGC 2 cut(s) 106, 116
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 186
BssMI GATC 3 cut(s) 132, 210, 225
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 122
BstKTI GATC 3 cut(s) 135, 213, 228
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 132, 210, 225
BstMCI CGRYCG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 186
CviJI RGCY 2 cut(s) 11, 126
CviKI_1 RGCY 2 cut(s) 11, 126
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 134, 212, 227
DpnII GATC 3 cut(s) 132, 210, 225
Eco57I CTGAAG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 66
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FspBI CTAG 1 cut(s) 235
HaeIII GGCC 1 cut(s) 11
HapII CCGG 4 cut(s) 32, 89, 176, 187
Hin1I GRCGYC 1 cut(s) 75
HinfI GANTC 4 cut(s) 59, 138, 179, 192
HpaII CCGG 4 cut(s) 32, 89, 176, 187
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 5 cut(s) 17, 64, 71, 123, 137
Hpy188III TCNNGA 2 cut(s) 79, 202
Hpy99I CGWCG 2 cut(s) 50, 80
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 132, 210, 225
LpnPI CCDG 6 cut(s) 45, 102, 140, 164, 189, 200
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 235
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 134, 212, 227
MboI GATC 3 cut(s) 132, 210, 225
MboII GAAGA 1 cut(s) 142
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 11, 181
MroXI GAANNNNTTC 1 cut(s) 152
MspI CCGG 4 cut(s) 32, 89, 176, 187
MspR9I CCNGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 89
NdeII GATC 3 cut(s) 132, 210, 225
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 54, 75
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 138, 179, 192
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 132, 210, 225
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 89
SetI ASST 1 cut(s) 78
SfaNI GCATC 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 186
SsiI CCGC 2 cut(s) 106, 116
SspMI CTAG 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 78
TfiI GAWTC 3 cut(s) 138, 179, 192
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 235
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.