RchiOBHm_Chr3g0475851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013698
Physical Location & Seq
Reverse (-)
21669371 .. 21670848
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44131

Sequence Viewer

Length: 750 bp
ATGATGGAGGCCATCGGAGGCATCTCTTTTCCGGTCGTGTTCTGCGACGGCGAGAGCGAGTCGGAAATCGGAGACGTCGTGATTTATCCGGCGATGGAGTTCAAGCGGTTCCAGGCGGTTCTGAGCCAGAAGATCGGAATCTCACCGAACCAGTTCTCGGTGTTCATCTCCTCGCCGGAATCCGGACGGCGAATCCCCGTCACGAGCAAGATCAACTTCAGCGTGATCTCCCGCGAGACCAACTGCTTCTTTCTCGTCGTCTTGAAGCGGACCAAGCGCGAGCGTCGCCGGAGGAATAATCAGCACCACCACCTCGACGAGTCCCAGTACTACAATACGCCGTCGTCGTATTACTCCCCCAATAAAATCAAGGAGAACCCTCTGGAGAATGCTGTGTTTCTGAGGCGCGGCGCGGGGATCAACCACCACGGCGGGGAAGCAGCAGCGCTTTCCGGGATGGGCATGCCGTTCGCGGGTCGGGTCGAGTGGGAGAACCGGGTCAGGGAGTTGCAGATTGAAAAGGAGAGATATTTGATGAACATGGGCCTTGCGAGGGCTTCTGGGTTTGGGCTGGGCCAGGGCGGCGGCGGCGGTGACGGTGGAGGTGGCGGCGTGGTGGTGTGTGAGGACTGTTCCAGAGCTGATGAGATGGGGACGGAGGTTGGGTTCCATTGGTGCGCTTACGATCCTGTTGTGACTTTCCGGTTCAGGTCTCCCGCGGGTCCAATCTCCCGACCCACCACCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.56

Weight (kDa)

8.61

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7138 PF23596 8 - 86 1.5e-37 Domain of unknown function (DUF7138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccII CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
AccIII TCCGGA 1 cut(s) 182
AclWI GGATC 2 cut(s) 425, 680
AcuI CTGAAG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 329
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 6 cut(s) 157, 182, 433, 473, 502, 553
AgsI TTSAA 3 cut(s) 103, 265, 518
AjnI CCWGG 2 cut(s) 111, 576
AloI GAACNNNNNNTCC 2 cut(s) 650, 682
AluBI AGCT 1 cut(s) 641
AluI AGCT 1 cut(s) 641
Alw26I GTCTC 3 cut(s) 66, 230, 717
AlwI GGATC 2 cut(s) 425, 680
Aor13HI TCCGGA 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 3 cut(s) 9, 544, 574
ApeKI GCWGC 2 cut(s) 440, 443
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 5 cut(s) 279, 408, 413, 448, 680
AspS9I GGNCC 4 cut(s) 270, 544, 574, 722
AsuC2I CCSGG 2 cut(s) 454, 497
AsuHPI GGTGA 2 cut(s) 135, 605
AvaII GGWCC 2 cut(s) 270, 722
BauI CACGAG 1 cut(s) 202
BbvI GCAGC 2 cut(s) 452, 455
BccI CCATC 4 cut(s) 20, 88, 451, 643
BceAI ACGGC 5 cut(s) 64, 203, 325, 445, 451
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 2 cut(s) 113, 578
BcnI CCSGG 2 cut(s) 454, 497
BcoDI GTCTC 3 cut(s) 66, 230, 717
BfoI RGCGCY 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 582
BisI GCNGC 7 cut(s) 409, 441, 444, 583, 586, 589, 610
BlsI GCNGC 7 cut(s) 410, 442, 445, 584, 587, 590, 611
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 4 cut(s) 113, 454, 497, 578
Bme18I GGWCC 2 cut(s) 270, 722
BmgT120I GGNCC 4 cut(s) 270, 544, 574, 722
BmiI GGNNCC 3 cut(s) 110, 668, 723
BmrFI CCNGG 4 cut(s) 113, 454, 497, 578
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 454, 497
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 230, 717
BsaJI CCNNGG 3 cut(s) 427, 577, 717
BsaWI WCCGGW 3 cut(s) 31, 182, 702
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 650, 680
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 182, 433, 473, 502, 553
Bse1I ACTGG 2 cut(s) 151, 325
Bse8I GATNNNNATC 1 cut(s) 137
BseAI TCCGGA 1 cut(s) 182
BseBI CCWGG 2 cut(s) 113, 578
BseDI CCNNGG 3 cut(s) 427, 577, 717
BseGI GGATG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 6 cut(s) 157, 182, 433, 473, 502, 553
BseMII CTCAG 2 cut(s) 113, 392
BseNI ACTGG 2 cut(s) 151, 325
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 452, 455
BseYI CCCAGC 1 cut(s) 571
Bsh1236I CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 3 cut(s) 11, 546, 576
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 8 cut(s) 32, 89, 176, 183, 289, 453, 496, 703
BslFI GGGAC 2 cut(s) 307, 667
BslI CCNNNNNNNGG 6 cut(s) 157, 182, 433, 473, 502, 553
BsmAI GTCTC 3 cut(s) 66, 230, 717
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 307, 667
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 3 cut(s) 11, 546, 576
Bso31I GGTCTC 2 cut(s) 230, 717
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 5 cut(s) 132, 210, 225, 417, 685
BspANI GGCC 3 cut(s) 11, 546, 576
BspCNI CTCAG 2 cut(s) 114, 393
BspEI TCCGGA 1 cut(s) 182
BspFNI CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
BspLI GGNNCC 3 cut(s) 110, 668, 723
BspPI GGATC 2 cut(s) 425, 680
BspTNI GGTCTC 2 cut(s) 230, 717
BsrI ACTGG 2 cut(s) 151, 325
BssECI CCNNGG 3 cut(s) 427, 577, 717
BssMI GATC 5 cut(s) 132, 210, 225, 417, 685
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 113, 578
Bst4CI ACNGT 2 cut(s) 599, 632
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 281, 464
BstDEI CTNAG 2 cut(s) 122, 401
BstDSI CCRYGG 2 cut(s) 427, 717
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 5 cut(s) 279, 408, 413, 448, 680
BstKTI GATC 5 cut(s) 135, 213, 228, 420, 688
BstMAI GTCTC 3 cut(s) 66, 230, 717
BstMBI GATC 5 cut(s) 132, 210, 225, 417, 685
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 4 cut(s) 274, 285, 582, 588
BstNI CCWGG 2 cut(s) 113, 578
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 4 cut(s) 111, 452, 495, 576
BstUI CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
BstV1I GCAGC 2 cut(s) 452, 455
BsuRI GGCC 3 cut(s) 11, 546, 576
BtgI CCRYGG 2 cut(s) 427, 717
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 281, 464
CfoI GCGC 5 cut(s) 279, 408, 413, 448, 680
Cfr13I GGNCC 4 cut(s) 270, 544, 574, 722
Cfr42I CCGCGG 1 cut(s) 720
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 328
CviAII CATG 2 cut(s) 463, 541
CviJI RGCY 7 cut(s) 11, 126, 546, 557, 571, 576, 641
CviKI_1 RGCY 7 cut(s) 11, 126, 546, 557, 571, 576, 641
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 122, 401
DpnI GATC 5 cut(s) 134, 212, 227, 419, 687
DpnII GATC 5 cut(s) 132, 210, 225, 417, 685
Eco31I GGTCTC 2 cut(s) 230, 717
Eco47I GGWCC 2 cut(s) 270, 722
Eco47III AGCGCT 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 111, 576
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 466, 544
FaiI YATR 2 cut(s) 464, 542
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 2 cut(s) 307, 667
FatI CATG 2 cut(s) 462, 540
FauI CCCGC 6 cut(s) 239, 406, 425, 466, 712, 724
Fnu4HI GCNGC 7 cut(s) 409, 441, 444, 583, 586, 589, 610
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 7 cut(s) 409, 441, 444, 583, 586, 589, 610
GlaI GCGC 5 cut(s) 278, 407, 412, 447, 679
GluI GCNGC 7 cut(s) 409, 441, 444, 583, 586, 589, 610
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 3 cut(s) 11, 546, 576
HapII CCGG 8 cut(s) 32, 89, 176, 183, 289, 453, 496, 703
HgaI GACGC 1 cut(s) 272
HhaI GCGC 5 cut(s) 279, 408, 413, 448, 680
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 466, 544
Hin6I GCGC 5 cut(s) 277, 406, 411, 446, 678
HinP1I GCGC 5 cut(s) 277, 406, 411, 446, 678
HinfI GANTC 5 cut(s) 59, 138, 179, 192, 320
HpaII CCGG 8 cut(s) 32, 89, 176, 183, 289, 453, 496, 703
HphI GGTGA 2 cut(s) 135, 605
Hpy188I TCNGA 6 cut(s) 17, 64, 71, 123, 137, 402
Hpy188III TCNNGA 7 cut(s) 79, 183, 202, 262, 383, 636, 732
Hpy99I CGWCG 7 cut(s) 50, 80, 260, 288, 320, 346, 349
HpyCH4III ACNGT 2 cut(s) 599, 632
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 285, 582, 588
HpyF3I CTNAG 2 cut(s) 122, 401
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 466, 544
HspAI GCGC 5 cut(s) 277, 406, 411, 446, 678
Kpn2I TCCGGA 1 cut(s) 182
KspI CCGCGG 1 cut(s) 720
Kzo9I GATC 5 cut(s) 132, 210, 225, 417, 685
Lsp1109I GCAGC 2 cut(s) 452, 455
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 199, 593, 694
MalI GATC 5 cut(s) 134, 212, 227, 419, 687
MboI GATC 5 cut(s) 132, 210, 225, 417, 685
MboII GAAGA 1 cut(s) 142
MlyI GAGTC 2 cut(s) 68, 329
MmeI TCCRAC 1 cut(s) 42
MroI TCCGGA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 8 cut(s) 32, 89, 176, 183, 289, 453, 496, 703
MspR9I CCNGG 4 cut(s) 113, 454, 497, 578
MteI GCGCNGCGC 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 113, 578
MvnI CGCG 6 cut(s) 234, 279, 408, 413, 473, 719
MwoI GCNNNNNNNGC 4 cut(s) 274, 285, 582, 588
NciI CCSGG 2 cut(s) 454, 497
NdeII GATC 5 cut(s) 132, 210, 225, 417, 685
NlaIII CATG 2 cut(s) 466, 544
NlaIV GGNNCC 3 cut(s) 110, 668, 723
NmuCI GTSAC 3 cut(s) 199, 593, 694
NspI RCATGY 1 cut(s) 466
PaeI GCATGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 54, 75, 344
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 138, 179, 192
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 7 cut(s) 410, 442, 445, 584, 587, 590, 611
PleI GAGTC 2 cut(s) 67, 328
PpsI GAGTC 2 cut(s) 67, 328
Psp6I CCWGG 2 cut(s) 111, 576
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 2 cut(s) 111, 576
PspN4I GGNNCC 3 cut(s) 110, 668, 723
PspPI GGNCC 4 cut(s) 270, 544, 574, 722
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacII CCGCGG 1 cut(s) 720
SatI GCNGC 7 cut(s) 409, 441, 444, 583, 586, 589, 610
Sau3AI GATC 5 cut(s) 132, 210, 225, 417, 685
Sau96I GGNCC 4 cut(s) 270, 544, 574, 722
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 2 cut(s) 68, 329
ScrFI CCNGG 4 cut(s) 113, 454, 497, 578
SetI ASST 6 cut(s) 78, 315, 607, 643, 663, 713
SfaNI GCATC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 720
SinI GGWCC 2 cut(s) 270, 722
SphI GCATGC 1 cut(s) 466
StyD4I CCNGG 4 cut(s) 111, 452, 495, 576
TaaI ACNGT 2 cut(s) 599, 632
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 315, 483
TatI WGTACW 1 cut(s) 327
TauI GCSGC 5 cut(s) 411, 585, 588, 591, 612
TfiI GAWTC 3 cut(s) 138, 179, 192
TseFI GTSAC 3 cut(s) 199, 593, 694
TseI GCWGC 2 cut(s) 440, 443
Tsp45I GTSAC 3 cut(s) 199, 593, 694
TspDTI ATGAA 2 cut(s) 154, 551
TspGWI ACGGA 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 270, 722
XceI RCATGY 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.