Rmu_co8277165.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8277165.1
OG0013698
Physical Location & Seq
Forward (+)
1 .. 840
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8277165.1_g000001.1.cds

Sequence Viewer

Length: 757 bp
gatctgacgtcatcacgccggcgatcgtggcagagatgatggaggccatcggaggcatctcttttccggtcgtgttctgcgacggcgagagcgagtcggaaatcggagacgtcgtgatttacccggcgatggagttcaagcggttccaggcggttctgagccagaagatcggaatctcaccgaaccagttctcggtgttcatctcctcgccggaatccggccggcgaatccccgtcacgagcaagatcaacttcagcgtgatctcccgcgagaccaactgcttctttctcgtcgtcttgaagcggaccaagcgcgagcgtcgccggaggaataatcagcaccaccacctcgacgagtcccagtactacaatacgccgtcgtcgtattactcccccaataaaatcaaggagaaccctctggagaatgctgtgtttctgaggcgcggcgcggggatcaaccaccacggcggggaagcagcagcgctttccgggatgggcatgccgttcgcgggtcgggtcgagtgggagaaccgggtcagggagttgcagattgaaaaggagagatatttgatgaacatgggccttgcgagcgcttctgggtttgggctgggccagggcggcggcggcgacggtggaggtggcggcgtgttggtgtgtgaggaatgttccagagctgatgagatggggacggaggttgggttccattggtgcgcttacgatcctgttgtgactttccggttcaggtcgcccgcgggtcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.75

Weight (kDa)

6.32

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 11, 113
AccII CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
AclWI GGATC 2 cut(s) 460, 712
AcoI YGGCCR 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 2 cut(s) 8, 110
AfaI GTAC 1 cut(s) 364
AfeI AGCGCT 2 cut(s) 482, 591
AfiI CCNNNNNNNGG 6 cut(s) 129, 192, 217, 468, 508, 537
AgsI TTSAA 3 cut(s) 138, 300, 553
AjnI CCWGG 2 cut(s) 146, 611
AloI GAACNNNNNNTCC 2 cut(s) 682, 714
AluBI AGCT 1 cut(s) 673
AluI AGCT 1 cut(s) 673
Alw26I GTCTC 2 cut(s) 101, 265
AlwI GGATC 2 cut(s) 460, 712
Aor51HI AGCGCT 2 cut(s) 482, 591
AoxI GGCC 4 cut(s) 44, 219, 579, 609
ApeKI GCWGC 2 cut(s) 475, 478
Asp700I GAANNNNTTC 1 cut(s) 187
AspLEI GCGC 6 cut(s) 314, 443, 448, 483, 592, 712
AspS9I GGNCC 4 cut(s) 305, 579, 609, 754
AsuC2I CCSGG 3 cut(s) 124, 489, 532
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 305, 754
BauI CACGAG 1 cut(s) 237
BbvI GCAGC 2 cut(s) 487, 490
BccI CCATC 5 cut(s) 33, 55, 123, 486, 675
BceAI ACGGC 4 cut(s) 99, 360, 480, 486
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BciT130I CCWGG 2 cut(s) 148, 613
BcnI CCSGG 3 cut(s) 124, 489, 532
BcoDI GTCTC 2 cut(s) 101, 265
BfoI RGCGCY 2 cut(s) 484, 593
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 7 cut(s) 444, 476, 479, 618, 621, 624, 642
BlsI GCNGC 7 cut(s) 445, 477, 480, 619, 622, 625, 643
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 5 cut(s) 124, 148, 489, 532, 613
Bme18I GGWCC 2 cut(s) 305, 754
BmgT120I GGNCC 4 cut(s) 305, 579, 609, 754
BmiI GGNNCC 3 cut(s) 145, 700, 755
BmrFI CCNGG 5 cut(s) 124, 148, 489, 532, 613
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 439
BpuMI CCSGG 3 cut(s) 124, 489, 532
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 8, 110
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 462, 612, 749
BsaWI WCCGGW 2 cut(s) 66, 734
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 682, 712
Bsc4I CCNNNNNNNGG 6 cut(s) 129, 192, 217, 468, 508, 537
Bse118I RCCGGY 2 cut(s) 18, 221
Bse1I ACTGG 2 cut(s) 186, 360
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 2 cut(s) 148, 613
BseDI CCNNGG 3 cut(s) 462, 612, 749
BseGI GGATG 1 cut(s) 497
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 6 cut(s) 129, 192, 217, 468, 508, 537
BseMII CTCAG 2 cut(s) 148, 427
BseNI ACTGG 2 cut(s) 186, 360
BseRI GAGGAG 1 cut(s) 195
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 487, 490
BseYI CCCAGC 1 cut(s) 606
Bsh1236I CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
Bsh1285I CGRYCG 3 cut(s) 26, 71, 222
BshFI GGCC 4 cut(s) 46, 221, 581, 611
BsiEI CGRYCG 3 cut(s) 26, 71, 222
BslFI GGGAC 2 cut(s) 342, 699
BslI CCNNNNNNNGG 6 cut(s) 129, 192, 217, 468, 508, 537
BsmAI GTCTC 2 cut(s) 101, 265
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 342, 699
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 4 cut(s) 46, 221, 581, 611
Bso31I GGTCTC 1 cut(s) 265
Bsp143I GATC 6 cut(s) 23, 167, 245, 260, 452, 717
BspANI GGCC 4 cut(s) 46, 221, 581, 611
BspCNI CTCAG 2 cut(s) 149, 428
BspFNI CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
BspLI GGNNCC 3 cut(s) 145, 700, 755
BspPI GGATC 2 cut(s) 460, 712
BspTNI GGTCTC 1 cut(s) 265
BsrFI RCCGGY 2 cut(s) 18, 221
BsrI ACTGG 2 cut(s) 186, 360
BssAI RCCGGY 2 cut(s) 18, 221
BssECI CCNNGG 3 cut(s) 462, 612, 749
BssMI GATC 6 cut(s) 23, 167, 245, 260, 452, 717
BssNI GRCGYC 2 cut(s) 8, 110
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 148, 613
Bst4CI ACNGT 1 cut(s) 631
BstACI GRCGYC 2 cut(s) 8, 110
BstC8I GCNNGC 6 cut(s) 20, 223, 316, 499, 588, 749
BstDEI CTNAG 2 cut(s) 157, 436
BstDSI CCRYGG 2 cut(s) 462, 749
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
BstH2I RGCGCY 2 cut(s) 484, 593
BstHHI GCGC 6 cut(s) 314, 443, 448, 483, 592, 712
BstKTI GATC 7 cut(s) 4, 26, 170, 248, 263, 455, 720
BstMAI GTCTC 2 cut(s) 101, 265
BstMBI GATC 6 cut(s) 23, 167, 245, 260, 452, 717
BstMCI CGRYCG 3 cut(s) 26, 71, 222
BstMWI GCNNNNNNNGC 6 cut(s) 28, 309, 320, 587, 617, 623
BstNI CCWGG 2 cut(s) 148, 613
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 5 cut(s) 122, 146, 487, 530, 611
BstUI CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
BstV1I GCAGC 2 cut(s) 487, 490
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 4 cut(s) 46, 221, 581, 611
BtgI CCRYGG 2 cut(s) 462, 749
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 497
Cac8I GCNNGC 6 cut(s) 20, 223, 316, 499, 588, 749
CfoI GCGC 6 cut(s) 314, 443, 448, 483, 592, 712
Cfr10I RCCGGY 2 cut(s) 18, 221
Cfr13I GGNCC 4 cut(s) 305, 579, 609, 754
Cfr42I CCGCGG 1 cut(s) 752
CseI GACGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 498, 576
CviJI RGCY 7 cut(s) 46, 161, 221, 581, 606, 611, 673
CviKI_1 RGCY 7 cut(s) 46, 161, 221, 581, 606, 611, 673
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 157, 436
DpnI GATC 7 cut(s) 3, 25, 169, 247, 262, 454, 719
DpnII GATC 6 cut(s) 23, 167, 245, 260, 452, 717
EaeI YGGCCR 1 cut(s) 219
EagI CGGCCG 1 cut(s) 219
EclXI CGGCCG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 305, 754
Eco47III AGCGCT 2 cut(s) 482, 591
Eco52I CGGCCG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 146, 611
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 501, 579
FaiI YATR 2 cut(s) 499, 577
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FaqI GGGAC 2 cut(s) 342, 699
FatI CATG 2 cut(s) 497, 575
FauI CCCGC 5 cut(s) 274, 441, 460, 501, 744
Fnu4HI GCNGC 7 cut(s) 444, 476, 479, 618, 621, 624, 642
FokI GGATG 1 cut(s) 504
Fsp4HI GCNGC 7 cut(s) 444, 476, 479, 618, 621, 624, 642
GlaI GCGC 6 cut(s) 313, 442, 447, 482, 591, 711
GluI GCNGC 7 cut(s) 444, 476, 479, 618, 621, 624, 642
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 439
HaeII RGCGCY 2 cut(s) 484, 593
HaeIII GGCC 4 cut(s) 46, 221, 581, 611
HgaI GACGC 1 cut(s) 307
HhaI GCGC 6 cut(s) 314, 443, 448, 483, 592, 712
Hin1I GRCGYC 2 cut(s) 8, 110
Hin1II CATG 2 cut(s) 501, 579
Hin6I GCGC 6 cut(s) 312, 441, 446, 481, 590, 710
HinP1I GCGC 6 cut(s) 312, 441, 446, 481, 590, 710
HinfI GANTC 5 cut(s) 94, 173, 214, 227, 355
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 7 cut(s) 6, 52, 99, 106, 158, 172, 437
Hpy188III TCNNGA 5 cut(s) 114, 237, 297, 418, 668
Hpy99I CGWCG 8 cut(s) 85, 115, 295, 323, 355, 381, 384, 631
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4IV ACGT 2 cut(s) 8, 110
HpyCH4V TGCA 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 309, 320, 587, 617, 623
HpyF3I CTNAG 2 cut(s) 157, 436
HpySE526I ACGT 2 cut(s) 8, 110
Hsp92I GRCGYC 2 cut(s) 8, 110
Hsp92II CATG 2 cut(s) 501, 579
HspAI GCGC 6 cut(s) 312, 441, 446, 481, 590, 710
KroI GCCGGC 2 cut(s) 18, 221
KroNI GCCGGC 2 cut(s) 20, 223
KspI CCGCGG 1 cut(s) 752
Kzo9I GATC 6 cut(s) 23, 167, 245, 260, 452, 717
Lsp1109I GCAGC 2 cut(s) 487, 490
LweI GCATC 1 cut(s) 65
MaeII ACGT 2 cut(s) 8, 110
MaeIII GTNAC 2 cut(s) 234, 726
MalI GATC 7 cut(s) 3, 25, 169, 247, 262, 454, 719
MboI GATC 6 cut(s) 23, 167, 245, 260, 452, 717
MboII GAAGA 1 cut(s) 177
MlyI GAGTC 2 cut(s) 103, 364
MmeI TCCRAC 1 cut(s) 77
MreI CGCCGGCG 1 cut(s) 18
MroNI GCCGGC 2 cut(s) 18, 221
MroXI GAANNNNTTC 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 751
MspR9I CCNGG 5 cut(s) 124, 148, 489, 532, 613
MteI GCGCNGCGC 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 2 cut(s) 148, 613
MvnI CGCG 6 cut(s) 269, 314, 443, 448, 508, 751
MwoI GCNNNNNNNGC 6 cut(s) 28, 309, 320, 587, 617, 623
NaeI GCCGGC 2 cut(s) 20, 223
NciI CCSGG 3 cut(s) 124, 489, 532
NdeII GATC 6 cut(s) 23, 167, 245, 260, 452, 717
NgoMIV GCCGGC 2 cut(s) 18, 221
NlaIII CATG 2 cut(s) 501, 579
NlaIV GGNNCC 3 cut(s) 145, 700, 755
NmuCI GTSAC 2 cut(s) 234, 726
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 4 cut(s) 77, 89, 110, 379
PctI GAATGC 1 cut(s) 429
PdiI GCCGGC 2 cut(s) 20, 223
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 173, 214, 227
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 7 cut(s) 445, 477, 480, 619, 622, 625, 643
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 2 cut(s) 102, 363
PpsI GAGTC 2 cut(s) 102, 363
Psp6I CCWGG 2 cut(s) 146, 611
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 2 cut(s) 146, 611
PspN4I GGNNCC 3 cut(s) 145, 700, 755
PspPI GGNCC 4 cut(s) 305, 579, 609, 754
PvuI CGATCG 1 cut(s) 26
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacII CCGCGG 1 cut(s) 752
SatI GCNGC 7 cut(s) 444, 476, 479, 618, 621, 624, 642
Sau3AI GATC 6 cut(s) 23, 167, 245, 260, 452, 717
Sau96I GGNCC 4 cut(s) 305, 579, 609, 754
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 2 cut(s) 103, 364
ScrFI CCNGG 5 cut(s) 124, 148, 489, 532, 613
SetI ASST 7 cut(s) 11, 113, 350, 639, 675, 695, 745
SfaNI GCATC 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 752
SgrAI CRCCGGYG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 752
SinI GGWCC 2 cut(s) 305, 754
SphI GCATGC 1 cut(s) 501
StyD4I CCNGG 5 cut(s) 122, 146, 487, 530, 611
TaaI ACNGT 1 cut(s) 631
TaiI ACGT 2 cut(s) 11, 113
TaqI TCGA 2 cut(s) 350, 518
TatI WGTACW 1 cut(s) 362
TauI GCSGC 5 cut(s) 446, 620, 623, 626, 644
TfiI GAWTC 3 cut(s) 173, 214, 227
TseFI GTSAC 2 cut(s) 234, 726
TseI GCWGC 2 cut(s) 475, 478
Tsp45I GTSAC 2 cut(s) 234, 726
TspDTI ATGAA 2 cut(s) 189, 586
TspGWI ACGGA 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 305, 754
XceI RCATGY 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 187
ZraI GACGTC 2 cut(s) 9, 111
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.