RLG00000023807

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013698
Physical Location & Seq
Forward (+)
28533060 .. 28534592
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023807

Sequence Viewer

Length: 744 bp
ATGATGGAGTCCCTCGGAGGCATCTCTTTTCCGGTCGTGTTCTGCGACGGCGAGAGCGAGTCGGAAATCGGAGACGTCGTGATTTACCCGGCGATGGAGTTCAAGCGGTTCCAGGCGGTTCTGAGCCAGAAGATCGGAATCTCACCGAACCAGTTCTCGGTGTTCATCTCCTCGCCGGAATCCCGCCGGCGAATCCCCGTCACCAGCAAGATCAACTTCAGCGTGATCTCTCGCGAGACCAACTGCTTCTTTCTCGTCGTCTTGAAGCGGACCAAGCGCGAGCGTCGCCGGAGGAATAATCAGCACCACCACCTCGACGAGTCCCAGTACTACAATACGCCGTCGTATTACTCCCCCAATAAAATCAAGGAGAACCCTCTGGAGAATGCTGTGTTTCTGAGGCGCGGCACTGGGATCAACCACCACGGCGGGGAAGCAGCAGCGCTTTCCTGGATGGGCATGCCGTTCGCCGGTCGGGTCGAGTGGGAGAACCGGGTCCGGGAGTTGCAGATTGAAAAGGAGAGATATTTGATGAACATGGGCCTTGCGAGGGCTTCTGGGTTTGGGCTGGGCCAGGGCGGCGGCGGTGACGGTGGAGGTGGCGGCGTGGTGGTGTGTGAGGAATGTTCCAGAGCTGAAGAGATCGGGACGGAGGTTGGGTTCCATTGGTGCGCTTACGATCCTGTTGTGACCTTCCGGTTCAGGTCTCCCGCGGGTCCAATCTCCCGACCCGCCACCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.67

Weight (kDa)

8.84

Isoelectric Point (pI)

68.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7138 PF23596 8 - 86 5.3e-38 Domain of unknown function (DUF7138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccII CGCG 4 cut(s) 234, 279, 405, 713
AclWI GGATC 2 cut(s) 422, 674
AcuI CTGAAG 2 cut(s) 202, 657
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 329
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 6 cut(s) 94, 157, 430, 470, 499, 550
AgsI TTSAA 3 cut(s) 103, 265, 515
AjnI CCWGG 3 cut(s) 111, 449, 573
AloI GAACNNNNNNTCC 2 cut(s) 644, 676
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
Alw26I GTCTC 3 cut(s) 66, 230, 711
AlwI GGATC 2 cut(s) 422, 674
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 541, 571
ApeKI GCWGC 2 cut(s) 437, 440
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 4 cut(s) 279, 405, 445, 674
AspS9I GGNCC 5 cut(s) 270, 496, 541, 571, 716
AsuC2I CCSGG 3 cut(s) 89, 494, 500
AsuHPI GGTGA 3 cut(s) 135, 193, 599
AvaII GGWCC 3 cut(s) 270, 496, 716
BbvI GCAGC 2 cut(s) 449, 452
BccI CCATC 2 cut(s) 88, 448
BceAI ACGGC 4 cut(s) 64, 325, 442, 448
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BciT130I CCWGG 3 cut(s) 113, 451, 575
BcnI CCSGG 3 cut(s) 89, 494, 500
BcoDI GTCTC 3 cut(s) 66, 230, 711
BfoI RGCGCY 1 cut(s) 446
BglI GCCNNNNNGGC 1 cut(s) 579
BisI GCNGC 6 cut(s) 406, 438, 441, 580, 583, 604
BlsI GCNGC 6 cut(s) 407, 439, 442, 581, 584, 605
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 6 cut(s) 89, 113, 451, 494, 500, 575
Bme18I GGWCC 3 cut(s) 270, 496, 716
BmgT120I GGNCC 5 cut(s) 270, 496, 541, 571, 716
BmiI GGNNCC 4 cut(s) 110, 497, 662, 717
BmrFI CCNGG 6 cut(s) 89, 113, 451, 494, 500, 575
BmrI ACTGGG 2 cut(s) 319, 420
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 2 cut(s) 319, 420
BpmI CTGGAG 1 cut(s) 401
BpuMI CCSGG 3 cut(s) 89, 494, 500
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 230, 711
BsaJI CCNNGG 4 cut(s) 13, 424, 574, 711
BsaWI WCCGGW 2 cut(s) 31, 696
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 644, 674
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 157, 430, 470, 499, 550
Bse118I RCCGGY 2 cut(s) 186, 470
Bse1I ACTGG 3 cut(s) 151, 325, 415
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 3 cut(s) 113, 451, 575
BseDI CCNNGG 4 cut(s) 13, 424, 574, 711
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 6 cut(s) 94, 157, 430, 470, 499, 550
BseMII CTCAG 2 cut(s) 113, 389
BseNI ACTGG 3 cut(s) 151, 325, 415
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 449, 452
BseYI CCCAGC 1 cut(s) 568
Bsh1236I CGCG 4 cut(s) 234, 279, 405, 713
Bsh1285I CGRYCG 2 cut(s) 36, 475
BshFI GGCC 2 cut(s) 543, 573
BsiEI CGRYCG 2 cut(s) 36, 475
BsiSI CCGG 9 cut(s) 32, 89, 176, 187, 289, 471, 493, 499, 697
BslFI GGGAC 2 cut(s) 307, 661
BslI CCNNNNNNNGG 6 cut(s) 94, 157, 430, 470, 499, 550
BsmAI GTCTC 3 cut(s) 66, 230, 711
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 307, 661
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 543, 573
Bso31I GGTCTC 2 cut(s) 230, 711
Bsp143I GATC 6 cut(s) 132, 210, 225, 414, 642, 679
Bsp68I TCGCGA 1 cut(s) 234
BspANI GGCC 2 cut(s) 543, 573
BspCNI CTCAG 2 cut(s) 114, 390
BspFNI CGCG 4 cut(s) 234, 279, 405, 713
BspLI GGNNCC 4 cut(s) 110, 497, 662, 717
BspPI GGATC 2 cut(s) 422, 674
BspTNI GGTCTC 2 cut(s) 230, 711
BsrFI RCCGGY 2 cut(s) 186, 470
BsrI ACTGG 3 cut(s) 151, 325, 415
BssAI RCCGGY 2 cut(s) 186, 470
BssECI CCNNGG 4 cut(s) 13, 424, 574, 711
BssMI GATC 6 cut(s) 132, 210, 225, 414, 642, 679
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 3 cut(s) 113, 451, 575
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 633
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 188, 281, 461
BstDEI CTNAG 2 cut(s) 122, 398
BstDSI CCRYGG 2 cut(s) 424, 711
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 4 cut(s) 234, 279, 405, 713
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 4 cut(s) 279, 405, 445, 674
BstKTI GATC 6 cut(s) 135, 213, 228, 417, 645, 682
BstMAI GTCTC 3 cut(s) 66, 230, 711
BstMBI GATC 6 cut(s) 132, 210, 225, 414, 642, 679
BstMCI CGRYCG 2 cut(s) 36, 475
BstMWI GCNNNNNNNGC 3 cut(s) 274, 285, 579
BstNI CCWGG 3 cut(s) 113, 451, 575
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 6 cut(s) 87, 111, 449, 492, 498, 573
BstUI CGCG 4 cut(s) 234, 279, 405, 713
BstV1I GCAGC 2 cut(s) 449, 452
BsuRI GGCC 2 cut(s) 543, 573
BtgI CCRYGG 2 cut(s) 424, 711
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 408
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 188, 281, 461
CfoI GCGC 4 cut(s) 279, 405, 445, 674
Cfr10I RCCGGY 2 cut(s) 186, 470
Cfr13I GGNCC 5 cut(s) 270, 496, 541, 571, 716
Cfr42I CCGCGG 1 cut(s) 714
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 328
CviAII CATG 2 cut(s) 460, 538
CviJI RGCY 6 cut(s) 126, 543, 554, 568, 573, 635
CviKI_1 RGCY 6 cut(s) 126, 543, 554, 568, 573, 635
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 122, 398
DpnI GATC 6 cut(s) 134, 212, 227, 416, 644, 681
DpnII GATC 6 cut(s) 132, 210, 225, 414, 642, 679
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco31I GGTCTC 2 cut(s) 230, 711
Eco47I GGWCC 3 cut(s) 270, 496, 716
Eco47III AGCGCT 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 202, 657
EcoRII CCWGG 3 cut(s) 111, 449, 573
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 463, 541
FaiI YATR 2 cut(s) 461, 539
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 2 cut(s) 307, 661
FatI CATG 2 cut(s) 459, 537
FauI CCCGC 5 cut(s) 191, 422, 706, 718, 739
Fnu4HI GCNGC 6 cut(s) 406, 438, 441, 580, 583, 604
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 6 cut(s) 406, 438, 441, 580, 583, 604
GlaI GCGC 4 cut(s) 278, 404, 444, 673
GluI GCNGC 6 cut(s) 406, 438, 441, 580, 583, 604
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 543, 573
HapII CCGG 9 cut(s) 32, 89, 176, 187, 289, 471, 493, 499, 697
HgaI GACGC 1 cut(s) 272
HhaI GCGC 4 cut(s) 279, 405, 445, 674
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 463, 541
Hin6I GCGC 4 cut(s) 277, 403, 443, 672
HinP1I GCGC 4 cut(s) 277, 403, 443, 672
HinfI GANTC 6 cut(s) 8, 59, 138, 179, 192, 320
HpaII CCGG 9 cut(s) 32, 89, 176, 187, 289, 471, 493, 499, 697
HphI GGTGA 3 cut(s) 135, 193, 599
Hpy188I TCNGA 6 cut(s) 17, 64, 71, 123, 137, 399
Hpy188III TCNNGA 7 cut(s) 79, 233, 262, 380, 630, 646, 726
Hpy99I CGWCG 6 cut(s) 50, 80, 260, 288, 320, 346
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 285, 579
HpyF3I CTNAG 2 cut(s) 122, 398
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 463, 541
HspAI GCGC 4 cut(s) 277, 403, 443, 672
KroI GCCGGC 1 cut(s) 186
KroNI GCCGGC 1 cut(s) 188
KspI CCGCGG 1 cut(s) 714
Kzo9I GATC 6 cut(s) 132, 210, 225, 414, 642, 679
Lsp1109I GCAGC 2 cut(s) 449, 452
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 199, 587, 688
MalI GATC 6 cut(s) 134, 212, 227, 416, 644, 681
MboI GATC 6 cut(s) 132, 210, 225, 414, 642, 679
MboII GAAGA 2 cut(s) 142, 650
MlyI GAGTC 3 cut(s) 17, 68, 329
MmeI TCCRAC 1 cut(s) 42
MreI CGCCGGCG 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 742
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 9 cut(s) 32, 89, 176, 187, 289, 471, 493, 499, 697
MspR9I CCNGG 6 cut(s) 89, 113, 451, 494, 500, 575
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 113, 451, 575
MvnI CGCG 4 cut(s) 234, 279, 405, 713
MwoI GCNNNNNNNGC 3 cut(s) 274, 285, 579
NaeI GCCGGC 1 cut(s) 188
NciI CCSGG 3 cut(s) 89, 494, 500
NdeII GATC 6 cut(s) 132, 210, 225, 414, 642, 679
NgoMIV GCCGGC 1 cut(s) 186
NlaIII CATG 2 cut(s) 463, 541
NlaIV GGNNCC 4 cut(s) 110, 497, 662, 717
NmuCI GTSAC 3 cut(s) 199, 587, 688
NruI TCGCGA 1 cut(s) 234
NspI RCATGY 1 cut(s) 463
PaeI GCATGC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 54, 75
PctI GAATGC 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 138, 179, 192
PfoI TCCNGGA 2 cut(s) 449, 498
PkrI GCNGC 6 cut(s) 407, 439, 442, 581, 584, 605
PleI GAGTC 3 cut(s) 16, 67, 328
PpsI GAGTC 3 cut(s) 16, 67, 328
Psp6I CCWGG 3 cut(s) 111, 449, 573
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 3 cut(s) 111, 449, 573
PspN4I GGNNCC 4 cut(s) 110, 497, 662, 717
PspPI GGNCC 5 cut(s) 270, 496, 541, 571, 716
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacII CCGCGG 1 cut(s) 714
SaqAI TTAA 1 cut(s) 742
SatI GCNGC 6 cut(s) 406, 438, 441, 580, 583, 604
Sau3AI GATC 6 cut(s) 132, 210, 225, 414, 642, 679
Sau96I GGNCC 5 cut(s) 270, 496, 541, 571, 716
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 3 cut(s) 17, 68, 329
ScrFI CCNGG 6 cut(s) 89, 113, 451, 494, 500, 575
SetI ASST 7 cut(s) 78, 315, 601, 637, 657, 695, 707
SfaNI GCATC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 714
SgrAI CRCCGGYG 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 714
SinI GGWCC 3 cut(s) 270, 496, 716
SphI GCATGC 1 cut(s) 463
StyD4I CCNGG 6 cut(s) 87, 111, 449, 492, 498, 573
TaaI ACNGT 1 cut(s) 593
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 315, 480
TatI WGTACW 1 cut(s) 327
TauI GCSGC 4 cut(s) 408, 582, 585, 606
TfiI GAWTC 3 cut(s) 138, 179, 192
Tru1I TTAA 1 cut(s) 742
Tru9I TTAA 1 cut(s) 742
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 3 cut(s) 199, 587, 688
TseI GCWGC 2 cut(s) 437, 440
Tsp45I GTSAC 3 cut(s) 199, 587, 688
TspDTI ATGAA 2 cut(s) 154, 548
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 3 cut(s) 270, 496, 716
XceI RCATGY 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.