Rh3CG226600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013698
Physical Location & Seq
Reverse (-)
21338215 .. 21340129
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG226600.1

Sequence Viewer

Length: 945 bp
ATGCCCTCACCGCCTCACCGAATTTACCATTCCGGACCTAAACCCCCACACCTCCAATATATAAACCCCCCTGACCCAGTTCGACCCTTCCGCACCAAAAACCATCAAATCGCTCTCTGTTTCTTCTACCCTCTTTACACCTTTCGACTTTTGACGCTTTCAGGATCTGACGTCATCACGCCGGCGATCGTGGCAGAGATGATGGAGGCCATCGGAGGCATCTCTTTTCCGGTCGTGTTCTGCGACGGCGAGAGCGAGTCGGAAATCGGAGACGTCGTGATTTACCCGGCGATGGAGTTCAAGCGGTTCCAGGCGGTTCTGAGCCAGAAGATCGGAATCTCACCGAACCAGTTCTCGGTGTTCATCTCCTCGCCGGAATCCGGCCGGCGAATCCCCGTCACGAGCAAGATCAACTTCAGCGTGATCTCCCGCGAGACCAACTGCTTCTTTCTCGTCGTCTTGAAGCGGACCAAGCGCGAGCGTCGCCGGAGGAATAATCAGCACCACCACCTCGACGAGTCCCAGTACTACAATACGCCGTCGTCGTATTACTCCCCCAATAAAATCAAGGAGAACCCTCTGGAGAATGCTGTGTTTCTGAGGCGCGGCGCGGGGATCAACCACCACGGCGGGGAAGCAGCAGCGCTTTCCGGGATGGGCATGCCGTTCGCGGGTCGGGTCGAGTGGGAGAACCGGGTCAGGGAGTTGCAGATTGAAAAGGAGAGATATTTGATGAACATGGGCCTTGCGAGCGCTTCTGGGTTTGGTCTGGGCCAGGGCGGCGGCGGCGACGGTGGACGTGGCGGCGTGGTGGTGTGTGAGGAATGTTCCAGAGCTGATGAGATGGGGACGGAGGTTGGGTTCCATTGGTGCGCTTACGATCCTGTTGTGACTTTCCGGTTCAGGTCGCCCGCGGGTCCAATCTCCCGACCCACCACCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.09

Weight (kDa)

9.01

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7138 PF23596 74 - 152 2.4e-37 Domain of unknown function (DUF7138)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g20260
malus_domestica MD12G1039700.v1.1 MD14G1038300.v1.1
prunus_persica Prupe.7G095200_v2.0.a1
pyrus_communis pycom03g00540 pycom12g03370 pycom14g03320
rosa_chinensis RchiOBHm_Chr3g0475851
rosa_laevigata RLG00000023807
rosa_multiflora Rmu_co8277165.1_g000001
rosa_roxburghii Rroxscaffold_6G00405790
rosa_rugosa Rorug03G0151700
rosa_samantha Rh3BG232000 Rh3CG226600 Rh3DG227200 Rh4CG218200 Rh7BG133300
rosa_wichuraiana Rw3G018360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 174, 276
AccII CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
AccIII TCCGGA 1 cut(s) 32
AclWI GGATC 3 cut(s) 172, 623, 875
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 400
AcyI GRCGYC 2 cut(s) 171, 273
AfaI GTAC 1 cut(s) 527
AfeI AGCGCT 2 cut(s) 645, 754
AfiI CCNNNNNNNGG 6 cut(s) 292, 355, 380, 631, 671, 700
AgsI TTSAA 3 cut(s) 301, 463, 716
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 2 cut(s) 309, 774
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
AluBI AGCT 1 cut(s) 836
AluI AGCT 1 cut(s) 836
Alw26I GTCTC 2 cut(s) 264, 428
AlwI GGATC 3 cut(s) 172, 623, 875
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 32
Aor51HI AGCGCT 2 cut(s) 645, 754
AoxI GGCC 4 cut(s) 207, 382, 742, 772
ApeKI GCWGC 2 cut(s) 638, 641
ApoI RAATTY 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 6 cut(s) 477, 606, 611, 646, 755, 875
AspS9I GGNCC 5 cut(s) 35, 468, 742, 772, 917
AsuC2I CCSGG 3 cut(s) 287, 652, 695
AsuHPI GGTGA 2 cut(s) 8, 333
AvaII GGWCC 3 cut(s) 35, 468, 917
BauI CACGAG 1 cut(s) 400
BbvI GCAGC 2 cut(s) 650, 653
BccI CCATC 6 cut(s) 111, 196, 218, 286, 649, 838
BceAI ACGGC 4 cut(s) 262, 523, 643, 649
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BciT130I CCWGG 2 cut(s) 311, 776
BcnI CCSGG 3 cut(s) 287, 652, 695
BcoDI GTCTC 2 cut(s) 264, 428
BfoI RGCGCY 2 cut(s) 647, 756
BglI GCCNNNNNGGC 1 cut(s) 780
BisI GCNGC 7 cut(s) 607, 639, 642, 781, 784, 787, 805
BlsI GCNGC 7 cut(s) 608, 640, 643, 782, 785, 788, 806
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 5 cut(s) 287, 311, 652, 695, 776
Bme18I GGWCC 3 cut(s) 35, 468, 917
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 5 cut(s) 35, 468, 742, 772, 917
BmiI GGNNCC 3 cut(s) 308, 863, 918
BmrFI CCNGG 5 cut(s) 287, 311, 652, 695, 776
BmrI ACTGGG 2 cut(s) 71, 517
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 2 cut(s) 71, 517
BpmI CTGGAG 1 cut(s) 602
BpuMI CCSGG 3 cut(s) 287, 652, 695
BsaBI GATNNNNATC 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 171, 273
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 625, 775, 912
BsaWI WCCGGW 3 cut(s) 32, 229, 897
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 845, 875
Bsc4I CCNNNNNNNGG 6 cut(s) 292, 355, 380, 631, 671, 700
Bse118I RCCGGY 2 cut(s) 181, 384
Bse1I ACTGG 3 cut(s) 77, 349, 523
Bse8I GATNNNNATC 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 32
BseBI CCWGG 2 cut(s) 311, 776
BseDI CCNNGG 3 cut(s) 625, 775, 912
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 6 cut(s) 292, 355, 380, 631, 671, 700
BseMII CTCAG 2 cut(s) 311, 590
BseNI ACTGG 3 cut(s) 77, 349, 523
BseRI GAGGAG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 650, 653
Bsh1236I CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
Bsh1285I CGRYCG 3 cut(s) 189, 234, 385
BshFI GGCC 4 cut(s) 209, 384, 744, 774
BsiEI CGRYCG 3 cut(s) 189, 234, 385
BslFI GGGAC 2 cut(s) 505, 862
BslI CCNNNNNNNGG 6 cut(s) 292, 355, 380, 631, 671, 700
BsmAI GTCTC 2 cut(s) 264, 428
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 505, 862
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 4 cut(s) 209, 384, 744, 774
Bso31I GGTCTC 1 cut(s) 428
Bsp13I TCCGGA 1 cut(s) 32
Bsp143I GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
BspANI GGCC 4 cut(s) 209, 384, 744, 774
BspCNI CTCAG 2 cut(s) 312, 591
BspEI TCCGGA 1 cut(s) 32
BspFNI CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
BspLI GGNNCC 3 cut(s) 308, 863, 918
BspPI GGATC 3 cut(s) 172, 623, 875
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 181, 384
BsrI ACTGG 3 cut(s) 77, 349, 523
BssAI RCCGGY 2 cut(s) 181, 384
BssECI CCNNGG 3 cut(s) 625, 775, 912
BssMI GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
BssNI GRCGYC 2 cut(s) 171, 273
BssSI CACGAG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 311, 776
Bst4CI ACNGT 1 cut(s) 794
BstACI GRCGYC 2 cut(s) 171, 273
BstC8I GCNNGC 6 cut(s) 183, 386, 479, 662, 751, 912
BstDEI CTNAG 2 cut(s) 320, 599
BstDSI CCRYGG 2 cut(s) 625, 912
BstF5I GGATG 1 cut(s) 660
BstFNI CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
BstH2I RGCGCY 2 cut(s) 647, 756
BstHHI GCGC 6 cut(s) 477, 606, 611, 646, 755, 875
BstKTI GATC 7 cut(s) 167, 189, 333, 411, 426, 618, 883
BstMAI GTCTC 2 cut(s) 264, 428
BstMBI GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
BstMCI CGRYCG 3 cut(s) 189, 234, 385
BstMWI GCNNNNNNNGC 7 cut(s) 10, 191, 472, 483, 750, 780, 786
BstNI CCWGG 2 cut(s) 311, 776
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 5 cut(s) 285, 309, 650, 693, 774
BstUI CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
BstV1I GCAGC 2 cut(s) 650, 653
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BstZI CGGCCG 1 cut(s) 382
BsuRI GGCC 4 cut(s) 209, 384, 744, 774
BtgI CCRYGG 2 cut(s) 625, 912
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 1 cut(s) 660
Cac8I GCNNGC 6 cut(s) 183, 386, 479, 662, 751, 912
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 6 cut(s) 477, 606, 611, 646, 755, 875
Cfr10I RCCGGY 2 cut(s) 181, 384
Cfr13I GGNCC 5 cut(s) 35, 468, 742, 772, 917
Cfr42I CCGCGG 1 cut(s) 915
CseI GACGC 2 cut(s) 163, 470
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 661, 739
CviJI RGCY 6 cut(s) 209, 324, 384, 744, 774, 836
CviKI_1 RGCY 6 cut(s) 209, 324, 384, 744, 774, 836
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 320, 599
DpnI GATC 7 cut(s) 166, 188, 332, 410, 425, 617, 882
DpnII GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
EaeI YGGCCR 1 cut(s) 382
EagI CGGCCG 1 cut(s) 382
EclXI CGGCCG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 3 cut(s) 35, 468, 917
Eco47III AGCGCT 2 cut(s) 645, 754
Eco52I CGGCCG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 309, 774
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 2 cut(s) 664, 742
FaiI YATR 4 cut(s) 60, 62, 662, 740
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 2 cut(s) 505, 862
FatI CATG 2 cut(s) 660, 738
FauI CCCGC 6 cut(s) 437, 604, 623, 664, 907, 919
Fnu4HI GCNGC 7 cut(s) 607, 639, 642, 781, 784, 787, 805
FokI GGATG 1 cut(s) 667
Fsp4HI GCNGC 7 cut(s) 607, 639, 642, 781, 784, 787, 805
GlaI GCGC 6 cut(s) 476, 605, 610, 645, 754, 874
GluI GCNGC 7 cut(s) 607, 639, 642, 781, 784, 787, 805
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 2 cut(s) 647, 756
HaeIII GGCC 4 cut(s) 209, 384, 744, 774
HgaI GACGC 2 cut(s) 163, 470
HhaI GCGC 6 cut(s) 477, 606, 611, 646, 755, 875
Hin1I GRCGYC 2 cut(s) 171, 273
Hin1II CATG 2 cut(s) 664, 742
Hin6I GCGC 6 cut(s) 475, 604, 609, 644, 753, 873
HinP1I GCGC 6 cut(s) 475, 604, 609, 644, 753, 873
HinfI GANTC 5 cut(s) 257, 336, 377, 390, 518
HphI GGTGA 2 cut(s) 8, 333
Hpy166II GTNNAC 1 cut(s) 797
Hpy188I TCNGA 7 cut(s) 169, 215, 262, 269, 321, 335, 600
Hpy188III TCNNGA 8 cut(s) 33, 162, 277, 400, 460, 581, 831, 927
Hpy8I GTNNAC 1 cut(s) 797
Hpy99I CGWCG 8 cut(s) 248, 278, 458, 486, 518, 544, 547, 794
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 794
HpyCH4IV ACGT 3 cut(s) 171, 273, 799
HpyCH4V TGCA 1 cut(s) 709
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 191, 472, 483, 750, 780, 786
HpyF3I CTNAG 2 cut(s) 320, 599
HpySE526I ACGT 3 cut(s) 171, 273, 799
Hsp92I GRCGYC 2 cut(s) 171, 273
Hsp92II CATG 2 cut(s) 664, 742
HspAI GCGC 6 cut(s) 475, 604, 609, 644, 753, 873
Kpn2I TCCGGA 1 cut(s) 32
KroI GCCGGC 2 cut(s) 181, 384
KroNI GCCGGC 2 cut(s) 183, 386
KspI CCGCGG 1 cut(s) 915
Kzo9I GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
Lsp1109I GCAGC 2 cut(s) 650, 653
LweI GCATC 1 cut(s) 228
MaeII ACGT 3 cut(s) 171, 273, 799
MaeIII GTNAC 2 cut(s) 397, 889
MalI GATC 7 cut(s) 166, 188, 332, 410, 425, 617, 882
MboI GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
MboII GAAGA 2 cut(s) 115, 340
MflI RGATCY 1 cut(s) 164
MluCI AATT 1 cut(s) 21
MlyI GAGTC 2 cut(s) 266, 527
MmeI TCCRAC 1 cut(s) 240
MreI CGCCGGCG 1 cut(s) 181
MroI TCCGGA 1 cut(s) 32
MroNI GCCGGC 2 cut(s) 181, 384
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 1 cut(s) 943
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 5 cut(s) 287, 311, 652, 695, 776
MteI GCGCNGCGC 1 cut(s) 607
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 311, 776
MvnI CGCG 6 cut(s) 432, 477, 606, 611, 671, 914
MwoI GCNNNNNNNGC 7 cut(s) 10, 191, 472, 483, 750, 780, 786
NaeI GCCGGC 2 cut(s) 183, 386
NciI CCSGG 3 cut(s) 287, 652, 695
NdeII GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
NgoMIV GCCGGC 2 cut(s) 181, 384
NlaIII CATG 2 cut(s) 664, 742
NlaIV GGNNCC 3 cut(s) 308, 863, 918
NmuCI GTSAC 2 cut(s) 397, 889
NspI RCATGY 1 cut(s) 664
PaeI GCATGC 1 cut(s) 664
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 252, 273, 542
PctI GAATGC 1 cut(s) 592
PdiI GCCGGC 2 cut(s) 183, 386
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 3 cut(s) 336, 377, 390
PfoI TCCNGGA 1 cut(s) 650
PkrI GCNGC 7 cut(s) 608, 640, 643, 782, 785, 788, 806
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 2 cut(s) 265, 526
PpsI GAGTC 2 cut(s) 265, 526
Psp6I CCWGG 2 cut(s) 309, 774
PspGI CCWGG 2 cut(s) 309, 774
PspN4I GGNNCC 3 cut(s) 308, 863, 918
PspPI GGNCC 5 cut(s) 35, 468, 742, 772, 917
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 164
PvuI CGATCG 1 cut(s) 189
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SacII CCGCGG 1 cut(s) 915
SaqAI TTAA 1 cut(s) 943
SatI GCNGC 7 cut(s) 607, 639, 642, 781, 784, 787, 805
Sau3AI GATC 7 cut(s) 164, 186, 330, 408, 423, 615, 880
Sau96I GGNCC 5 cut(s) 35, 468, 742, 772, 917
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 266, 527
ScrFI CCNGG 5 cut(s) 287, 311, 652, 695, 776
SfaNI GCATC 1 cut(s) 228
Sfr303I CCGCGG 1 cut(s) 915
SgrAI CRCCGGYG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 915
SinI GGWCC 3 cut(s) 35, 468, 917
SphI GCATGC 1 cut(s) 664
Sse9I AATT 1 cut(s) 21
StyD4I CCNGG 5 cut(s) 285, 309, 650, 693, 774
TaaI ACNGT 1 cut(s) 794
TaiI ACGT 3 cut(s) 174, 276, 802
TaqI TCGA 4 cut(s) 82, 145, 513, 681
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 525
TauI GCSGC 5 cut(s) 609, 783, 786, 789, 807
TfiI GAWTC 3 cut(s) 336, 377, 390
Tru1I TTAA 1 cut(s) 943
Tru9I TTAA 1 cut(s) 943
TseFI GTSAC 2 cut(s) 397, 889
TseI GCWGC 2 cut(s) 638, 641
Tsp45I GTSAC 2 cut(s) 397, 889
TspDTI ATGAA 2 cut(s) 352, 749
TspGWI ACGGA 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 35, 468, 917
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 350
ZraI GACGTC 2 cut(s) 172, 274
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.