Prupe.7G193700_v2.0.a1

21 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014269
Physical Location & Seq
Forward (+)
18416980 .. 18418060
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G193700.1

Sequence Viewer

Length: 609 bp
ATGCGTTTCCTGCTCTCTCTCCTCCCGCTCCTCCTCCTCCTCCACTCCCTACCCTACTCCGCCGCTGCGCGGAAACACAACCCACACAACAACCCAACCAACTCATCCCATCTCGTCCGTTCGTCATGTAGCCACGCCAGCTACCCCAACCTCTGCATCCACTCTCTCTCCACCTACGTGGGCCCCGCAAACACCCCTCGCGACCTGGCCCAGGCCGCCGTCACCGTCAGCCTCTCACGAGCCCGCCGCGTTTCCAGCTACCTCGCCCAACTCTCCAACTCCGACCAGGGAACCAAACGAGAGCTTTCCGCTCTCAGCGCCTGCATCGACCTCATGTCCGAGTCCGTGGACGAGTTAACCCGGACGCTTGACGAGTTGAAGCACCTCCACGCCGAAACGTTTCTGTTTCAGATGAGCAACGCCCAGACTTGGGTCAGCGCGGCCCTCACAGATGACGACACGTGTCTTGATGGGTTTGAGGAGCTTGATGTGAAGGTGAAGGCGGATATGAAGCGCAAGGTTACGAATGCGGCTAGGGTTACTAGCAATGCGCTGTACCTGATCAACCGCCTCGATGAAAGCCGTGGTCGGCCCAGATCTAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0030234 GO:0043086 GO:0044092 GO:0048509 GO:0050789 GO:0050790 GO:0050793 GO:0065007 GO:0065009 GO:0098772 GO:1902183
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

203

Amino Acids

22.36

Weight (kDa)

8.72

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20740 AT5G20740
fragaria_vesca FvH4_1g09220
malus_domestica MD02G1099200.v1.1 MD15G1222000.v1.1
prunus_persica Prupe.7G193700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095671 RchiOBHm_Chr2g0095741
rosa_laevigata RLG00000016589
rosa_multiflora Rmu_co8375965.1_g000001
rosa_roxburghii Rroxscaffold_2G00146130
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101300 Rh2BG102900 Rh2CG105300 Rh2DG102700
rosa_wichuraiana Rw2G007680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 28, 311
AccII CGCG 4 cut(s) 70, 201, 249, 440
AclI AACGTT 1 cut(s) 398
AcvI CACGTG 1 cut(s) 462
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 4 cut(s) 69, 211, 429, 430
AflIII ACRYGT 2 cut(s) 459, 461
AgsI TTSAA 1 cut(s) 379
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 3 cut(s) 204, 210, 285
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 4 cut(s) 141, 258, 304, 484
AluI AGCT 4 cut(s) 141, 258, 304, 484
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 5 cut(s) 181, 207, 213, 441, 590
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 5 cut(s) 70, 320, 440, 516, 553
AspS9I GGNCC 5 cut(s) 181, 182, 208, 442, 591
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 214, 508
BaeGI GKGCMC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 185, 244
BauI CACGAG 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 462
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 117, 464
BceAI ACGGC 2 cut(s) 203, 567
BciT130I CCWGG 3 cut(s) 206, 212, 287
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 1 cut(s) 361
BfaI CTAG 2 cut(s) 534, 543
BfoI RGCGCY 1 cut(s) 321
BglII AGATCT 1 cut(s) 596
BisI GCNGC 6 cut(s) 63, 66, 216, 247, 441, 531
BlsI GCNGC 6 cut(s) 64, 67, 217, 248, 442, 532
Bme1390I CCNGG 4 cut(s) 206, 212, 287, 361
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgT120I GGNCC 5 cut(s) 181, 182, 208, 442, 591
BmiI GGNNCC 3 cut(s) 183, 184, 292
BmrFI CCNGG 4 cut(s) 206, 212, 287, 361
BmsI GCATC 2 cut(s) 165, 333
BoxI GACNNNNGTC 2 cut(s) 431, 462
BpuMI CCSGG 1 cut(s) 361
BsaAI YACGTR 2 cut(s) 178, 462
BsaJI CCNNGG 4 cut(s) 210, 286, 345, 583
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 211, 429, 430
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 3 cut(s) 206, 212, 287
BseDI CCNNGG 4 cut(s) 210, 286, 345, 583
BseGI GGATG 2 cut(s) 104, 156
BseLI CCNNNNNNNGG 4 cut(s) 69, 211, 429, 430
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 328
BseRI GAGGAG 6 cut(s) 11, 20, 23, 26, 29, 494
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 4 cut(s) 70, 201, 249, 440
BshFI GGCC 5 cut(s) 183, 209, 215, 443, 592
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 69, 211, 429, 430
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 5 cut(s) 183, 209, 215, 443, 592
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 185, 244
Bsp143I GATC 2 cut(s) 561, 596
Bsp68I TCGCGA 1 cut(s) 201
BspANI GGCC 5 cut(s) 183, 209, 215, 443, 592
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 4 cut(s) 70, 201, 249, 440
BspLI GGNNCC 3 cut(s) 183, 184, 292
BsrBI CCGCTC 2 cut(s) 28, 311
BsrDI GCAATG 1 cut(s) 553
BssECI CCNNGG 4 cut(s) 210, 286, 345, 583
BssMI GATC 2 cut(s) 561, 596
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 3 cut(s) 206, 212, 287
Bst4CI ACNGT 1 cut(s) 226
BstBAI YACGTR 2 cut(s) 178, 462
BstC8I GCNNGC 3 cut(s) 139, 244, 322
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 2 cut(s) 345, 583
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 104, 156
BstFNI CGCG 4 cut(s) 70, 201, 249, 440
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 5 cut(s) 70, 320, 440, 516, 553
BstKTI GATC 2 cut(s) 564, 599
BstMBI GATC 2 cut(s) 561, 596
BstMWI GCNNNNNNNGC 5 cut(s) 10, 138, 215, 255, 317
BstNI CCWGG 3 cut(s) 206, 212, 287
BstPAI GACNNNNGTC 2 cut(s) 431, 462
BstSCI CCNGG 4 cut(s) 204, 210, 285, 359
BstSLI GKGCMC 1 cut(s) 185
BstUI CGCG 4 cut(s) 70, 201, 249, 440
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 596
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 5 cut(s) 183, 209, 215, 443, 592
BtgI CCRYGG 2 cut(s) 345, 583
BtsCI GGATG 2 cut(s) 104, 156
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 3 cut(s) 139, 244, 322
CaiI CAGNNNCTG 1 cut(s) 321
CfoI GCGC 5 cut(s) 70, 320, 440, 516, 553
Cfr13I GGNCC 5 cut(s) 181, 182, 208, 442, 591
CseI GACGC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 126, 334
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 563, 598
DpnII GATC 2 cut(s) 561, 596
DriI GACNNNNNGTC 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 334
EciI GGCGGA 2 cut(s) 49, 518
Eco24I GRGCYC 2 cut(s) 185, 244
Eco72I CACGTG 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 204, 210, 285
EcoT38I GRGCYC 2 cut(s) 185, 244
FaeI CATG 2 cut(s) 129, 337
FaiI YATR 3 cut(s) 127, 335, 509
FatI CATG 2 cut(s) 125, 333
FauI CCCGC 3 cut(s) 33, 193, 251
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 6 cut(s) 63, 66, 216, 247, 441, 531
FokI GGATG 2 cut(s) 91, 143
FriOI GRGCYC 2 cut(s) 185, 244
Fsp4HI GCNGC 6 cut(s) 63, 66, 216, 247, 441, 531
FspBI CTAG 2 cut(s) 534, 543
GlaI GCGC 5 cut(s) 69, 319, 439, 515, 552
GluI GCNGC 6 cut(s) 63, 66, 216, 247, 441, 531
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 5 cut(s) 183, 209, 215, 443, 592
HapII CCGG 1 cut(s) 361
HgaI GACGC 1 cut(s) 373
HhaI GCGC 5 cut(s) 70, 320, 440, 516, 553
Hin1II CATG 2 cut(s) 129, 337
Hin6I GCGC 5 cut(s) 68, 318, 438, 514, 551
HinP1I GCGC 5 cut(s) 68, 318, 438, 514, 551
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 1 cut(s) 341
HpaI GTTAAC 1 cut(s) 357
HpaII CCGG 1 cut(s) 361
HphI GGTGA 2 cut(s) 214, 508
Hpy166II GTNNAC 2 cut(s) 349, 357
Hpy188I TCNGA 3 cut(s) 283, 340, 411
Hpy188III TCNNGA 3 cut(s) 200, 237, 467
Hpy8I GTNNAC 2 cut(s) 349, 357
HpyAV CCTTC 2 cut(s) 487, 493
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 3 cut(s) 177, 398, 461
HpyCH4V TGCA 2 cut(s) 156, 324
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 138, 215, 255, 317
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 3 cut(s) 177, 398, 461
Hsp92II CATG 2 cut(s) 129, 337
HspAI GCGC 5 cut(s) 68, 318, 438, 514, 551
Ksp22I TGATCA 1 cut(s) 561
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 561, 596
LmnI GCTCC 2 cut(s) 33, 481
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 165, 333
MaeI CTAG 2 cut(s) 534, 543
MaeII ACGT 3 cut(s) 177, 398, 461
MaeIII GTNAC 3 cut(s) 220, 520, 538
MalI GATC 2 cut(s) 563, 598
MbiI CCGCTC 2 cut(s) 28, 311
MboI GATC 2 cut(s) 561, 596
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 2 cut(s) 185, 244
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 300, 306
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 4 cut(s) 206, 212, 287, 361
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 3 cut(s) 206, 212, 287
MvnI CGCG 4 cut(s) 70, 201, 249, 440
MwoI GCNNNNNNNGC 5 cut(s) 10, 138, 215, 255, 317
NciI CCSGG 1 cut(s) 361
NdeII GATC 2 cut(s) 561, 596
NlaIII CATG 2 cut(s) 129, 337
NlaIV GGNNCC 3 cut(s) 183, 184, 292
NmuCI GTSAC 1 cut(s) 220
NruI TCGCGA 1 cut(s) 201
OliI CACNNNNGTG 1 cut(s) 176
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 399
PkrI GCNGC 6 cut(s) 64, 67, 217, 248, 442, 532
PleI GAGTC 1 cut(s) 349
PmaCI CACGTG 1 cut(s) 462
PmlI CACGTG 1 cut(s) 462
PpsI GAGTC 1 cut(s) 349
Ppu21I YACGTR 2 cut(s) 178, 462
PshAI GACNNNNGTC 2 cut(s) 431, 462
Psp1406I AACGTT 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 204, 210, 285
PspCI CACGTG 1 cut(s) 462
PspGI CCWGG 3 cut(s) 204, 210, 285
PspN4I GGNNCC 3 cut(s) 183, 184, 292
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 5 cut(s) 181, 182, 208, 442, 591
PstNI CAGNNNCTG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 596
RruI TCGCGA 1 cut(s) 201
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 6 cut(s) 63, 66, 216, 247, 441, 531
Sau3AI GATC 2 cut(s) 561, 596
Sau96I GGNCC 5 cut(s) 181, 182, 208, 442, 591
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 4 cut(s) 206, 212, 287, 361
SduI GDGCHC 2 cut(s) 185, 244
SfaNI GCATC 2 cut(s) 165, 333
SmiMI CAYNNNNRTG 1 cut(s) 176
SspMI CTAG 2 cut(s) 534, 543
StyD4I CCNGG 4 cut(s) 204, 210, 285, 359
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 3 cut(s) 180, 401, 464
TaqI TCGA 2 cut(s) 327, 573
TauI GCSGC 5 cut(s) 65, 218, 249, 443, 533
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 524, 591
TspGWI ACGGA 2 cut(s) 107, 334
XagI CCTNNNNNAGG 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 534, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.