Rh2BG102900

21 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014269
Physical Location & Seq
Reverse (-)
8519586 .. 8519783
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG102900.1

Sequence Viewer

Length: 198 bp
ATGAGCAACGCCCAGACGTGGGTCAGCACCGCCCTCACGAACGACGACACGTGTCTCGACGGGTTCCAGGAGGTCGACGGCAAGGTGAAGGCGGACGTCAAGAGGAAGATTACCAATGCTGCTAGGGTTACCAGTAACGCACTCTACATGATCAACCGGCTCGACGAGAGCCGCGGACGGCCCAGATCTAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0030234 GO:0043086 GO:0044092 GO:0048509 GO:0050789 GO:0050790 GO:0050793 GO:0065007 GO:0065009 GO:0098772 GO:1902183
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

65

Amino Acids

7.24

Weight (kDa)

9.43

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 1 - 50 4.1e-14 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20740 AT5G20740
fragaria_vesca FvH4_1g09220
malus_domestica MD02G1099200.v1.1 MD15G1222000.v1.1
prunus_persica Prupe.7G193700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095671 RchiOBHm_Chr2g0095741
rosa_laevigata RLG00000016589
rosa_multiflora Rmu_co8375965.1_g000001
rosa_roxburghii Rroxscaffold_2G00146130
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101300 Rh2BG102900 Rh2CG105300 Rh2DG102700
rosa_wichuraiana Rw2G007680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 174
AciI CCGC 4 cut(s) 30, 92, 172, 174
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 18, 19
AflIII ACRYGT 2 cut(s) 48, 50
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 59
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 97
BbrPI CACGTG 1 cut(s) 51
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 2 cut(s) 94, 194
BciT130I CCWGG 1 cut(s) 68
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 185
BisI GCNGC 2 cut(s) 120, 172
BlsI GCNGC 2 cut(s) 121, 173
Bme1390I CCNGG 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 68
BoxI GACNNNNGTC 2 cut(s) 20, 51
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 19
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 18, 19
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 18, 19
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 150, 185
BspACI CCGC 4 cut(s) 30, 92, 172, 174
BspANI GGCC 1 cut(s) 181
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 150, 185
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 127
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 2 cut(s) 153, 188
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 150, 185
BstNI CCWGG 1 cut(s) 68
BstPAI GACNNNNGTC 2 cut(s) 20, 51
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 180
Cfr42I CCGCGG 1 cut(s) 175
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 160, 171, 181, 193
CviKI_1 RGCY 4 cut(s) 160, 171, 181, 193
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 152, 187
DpnII GATC 2 cut(s) 150, 185
EciI GGCGGA 1 cut(s) 107
Eco72I CACGTG 1 cut(s) 51
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 120, 172
Fsp4HI GCNGC 2 cut(s) 120, 172
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 120, 172
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 37, 56, 100
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 4 cut(s) 47, 62, 80, 167
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 3 cut(s) 17, 50, 96
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 3 cut(s) 17, 50, 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 150
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 150, 185
LpnPI CCDG 5 cut(s) 26, 53, 80, 145, 170
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 123
MaeII ACGT 3 cut(s) 17, 50, 96
MaeIII GTNAC 2 cut(s) 127, 134
MalI GATC 2 cut(s) 152, 187
MboI GATC 2 cut(s) 150, 185
MboII GAAGA 1 cut(s) 118
MflI RGATCY 1 cut(s) 185
MnlI CCTC 3 cut(s) 44, 64, 96
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 174
NdeII GATC 2 cut(s) 150, 185
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 2 cut(s) 121, 173
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 51
PshAI GACNNNNGTC 2 cut(s) 20, 51
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 185
SacII CCGCGG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 74
SatI GCNGC 2 cut(s) 120, 172
Sau3AI GATC 2 cut(s) 150, 185
Sau96I GGNCC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 68
SetI ASST 5 cut(s) 20, 53, 75, 87, 99
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SsiI CCGC 4 cut(s) 30, 92, 172, 174
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 3 cut(s) 20, 53, 99
TaqI TCGA 3 cut(s) 57, 75, 162
TauI GCSGC 1 cut(s) 174
TseI GCWGC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 123
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.