Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375965.1

Orthogroup ID

OG0014269

Physical Location & Seq

Genomic Coordinates Forward (+)

527 .. 1117

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgcgcttcactctcctccctctcctcctcctcctccttctctcatactccgccgccgcacgtaaaccaagctcccacaacgccaccacctcctcctcccacctcgtccgtacgtcatgccaacacgccagctaccccaacctctgcctccacacgctctccgcctccccggcccagacccctcgcgacctggcccaggctgccgtcggcgtctccctctcacgcgcccgtaaagtctccgccttcctctcccagctctcccattcctcctccccgaagcggcagcgcgtggcggtcggcgactgcgtggagcaggtctcggactccgtcgacgagctgagccgcacgctggaggagctccaccacctccacgaggagacgttccggtggcagatgagcaacgcccagacgtgggtcagcgccgccctcacgaacgacgacacgtgtctcgacgggttccaggaggtcgacggcaaggtgaaggcggacgtcaagaggaagattaccaatgctgctagggttaccagtaacgcgctctacatgatcaaccggctcgacgagagccgcggacggcccagatctaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0008150 GO:0030234 GO:0043086 GO:0044092 GO:0048509 GO:0050789 GO:0050790 GO:0050793 GO:0065007 GO:0065009 GO:0098772 GO:1902183

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

196

Amino Acids

21.62

Weight (kDa)

9.38

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20740 AT5G20740
fragaria_vesca	FvH4_1g09220
malus_domestica	MD02G1099200.v1.1 MD15G1222000.v1.1
prunus_persica	Prupe.7G193700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0095671 RchiOBHm_Chr2g0095741
rosa_laevigata	RLG00000016589
rosa_multiflora	Rmu_co8375965.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146130
rosa_rugosa	Rorug02G0053000
rosa_samantha	Rh2AG101300 Rh2BG102900 Rh2CG105300 Rh2DG102700
rosa_wichuraiana	Rw2G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	304
AccI	GTMKAC	2 cut(s)	330, 468
AccII	CGCG	5 cut(s)	186, 225, 288, 533, 567
AcvI	CACGTG	1 cut(s)	444
AcyI	GRCGYC	2 cut(s)	210, 489
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	6 cut(s)	196, 279, 349, 373, 411, 412
AflIII	ACRYGT	2 cut(s)	441, 443
AjiI	CACGTC	1 cut(s)	411
AjnI	CCWGG	3 cut(s)	189, 195, 459
AluBI	AGCT	5 cut(s)	72, 132, 256, 337, 358
AluI	AGCT	5 cut(s)	72, 132, 256, 337, 358
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	5 cut(s)	217, 241, 322, 371, 452
AoxI	GGCC	3 cut(s)	171, 192, 572
ApeKI	GCWGC	3 cut(s)	200, 283, 512
AspLEI	GCGC	5 cut(s)	6, 227, 288, 422, 535
AspS9I	GGNCC	3 cut(s)	172, 193, 573
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	187, 295, 499
BceAI	ACGGC	3 cut(s)	188, 487, 587
BciT130I	CCWGG	3 cut(s)	191, 197, 461
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	5 cut(s)	217, 241, 322, 371, 452
BfaI	CTAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	304
BglI	GCCNNNNNGGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	9 cut(s)	54, 57, 201, 281, 284, 343, 423, 513, 565
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	9 cut(s)	55, 58, 202, 282, 285, 344, 424, 514, 566
Bme1390I	CCNGG	4 cut(s)	170, 191, 197, 461
BmgBI	CACGTC	1 cut(s)	411
BmgT120I	GGNCC	3 cut(s)	172, 193, 573
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	4 cut(s)	170, 191, 197, 461
BoxI	GACNNNNGTC	2 cut(s)	413, 444
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	170
BsaAI	YACGTR	2 cut(s)	62, 444
BsaHI	GRCGYC	2 cut(s)	210, 489
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	3 cut(s)	168, 195, 565
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 279, 349, 373, 411, 412
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	525
BseBI	CCWGG	3 cut(s)	191, 197, 461
BseDI	CCNNGG	3 cut(s)	168, 195, 565
BseLI	CCNNNNNNNGG	6 cut(s)	196, 279, 349, 373, 411, 412
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	187, 295, 499
BseYI	CCCAGC	1 cut(s)	252
Bsh1236I	CGCG	5 cut(s)	186, 225, 288, 533, 567
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	173, 194, 574
BsiEI	CGRYCG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	170, 385, 550
BsiWI	CGTACG	1 cut(s)	110
BslI	CCNNNNNNNGG	6 cut(s)	196, 279, 349, 373, 411, 412
BsmAI	GTCTC	5 cut(s)	217, 241, 322, 371, 452
BsmBI	CGTCTC	2 cut(s)	217, 371
BsnI	GGCC	3 cut(s)	173, 194, 574
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	543, 578
Bsp1720I	GCTNAGC	1 cut(s)	338
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	3 cut(s)	173, 194, 574
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	5 cut(s)	186, 225, 288, 533, 567
BspLI	GGNNCC	1 cut(s)	458
BspMI	ACCTGC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	525
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	168, 195, 565
BssMI	GATC	2 cut(s)	543, 578
BssNI	GRCGYC	2 cut(s)	210, 489
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	3 cut(s)	191, 197, 461
BstACI	GRCGYC	2 cut(s)	210, 489
BstBAI	YACGTR	2 cut(s)	62, 444
BstC8I	GCNNGC	2 cut(s)	130, 347
BstDEI	CTNAG	2 cut(s)	338, 582
BstDSI	CCRYGG	1 cut(s)	565
BstEII	GGTNACC	1 cut(s)	520
BstENI	CCTNNNNNAGG	2 cut(s)	194, 371
BstFNI	CGCG	5 cut(s)	186, 225, 288, 533, 567
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	5 cut(s)	6, 227, 288, 422, 535
BstKTI	GATC	2 cut(s)	546, 581
BstMAI	GTCTC	5 cut(s)	217, 241, 322, 371, 452
BstMBI	GATC	2 cut(s)	543, 578
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 200, 355
BstNI	CCWGG	3 cut(s)	191, 197, 461
BstPAI	GACNNNNGTC	2 cut(s)	413, 444
BstPI	GGTNACC	1 cut(s)	520
BstSCI	CCNGG	4 cut(s)	168, 189, 195, 459
BstUI	CGCG	5 cut(s)	186, 225, 288, 533, 567
BstV1I	GCAGC	3 cut(s)	187, 295, 499
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	173, 194, 574
BtgI	CCRYGG	1 cut(s)	565
BtrI	CACGTC	1 cut(s)	411
BtuMI	TCGCGA	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	130, 347
CfoI	GCGC	5 cut(s)	6, 227, 288, 422, 535
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	3 cut(s)	172, 193, 573
Cfr42I	CCGCGG	1 cut(s)	568
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	117, 541
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	338, 582
DpnI	GATC	2 cut(s)	545, 580
DpnII	GATC	2 cut(s)	543, 578
EciI	GGCGGA	4 cut(s)	40, 151, 229, 500
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	358
Eco72I	CACGTG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	2 cut(s)	194, 371
EcoO65I	GGTNACC	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	189, 195, 459
EcoT38I	GRGCYC	1 cut(s)	360
Esp3I	CGTCTC	2 cut(s)	217, 371
FaeI	CATG	2 cut(s)	120, 544
FaiI	YATR	3 cut(s)	46, 118, 542
FatI	CATG	2 cut(s)	116, 540
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	330, 468
Fnu4HI	GCNGC	9 cut(s)	54, 57, 201, 281, 284, 343, 423, 513, 565
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	9 cut(s)	54, 57, 201, 281, 284, 343, 423, 513, 565
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	5 cut(s)	5, 226, 287, 421, 534
GluI	GCNGC	9 cut(s)	54, 57, 201, 281, 284, 343, 423, 513, 565
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	173, 194, 574
HapII	CCGG	3 cut(s)	170, 385, 550
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	5 cut(s)	6, 227, 288, 422, 535
Hin1I	GRCGYC	2 cut(s)	210, 489
Hin1II	CATG	2 cut(s)	120, 544
Hin6I	GCGC	5 cut(s)	4, 225, 286, 420, 533
HinP1I	GCGC	5 cut(s)	4, 225, 286, 420, 533
HincII	GTYRAC	2 cut(s)	331, 469
HindII	GTYRAC	2 cut(s)	331, 469
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	3 cut(s)	170, 385, 550
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	65, 331, 469
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	4 cut(s)	185, 430, 449, 493
Hpy8I	GTNNAC	3 cut(s)	65, 331, 469
Hpy99I	CGWCG	7 cut(s)	209, 332, 335, 440, 455, 473, 560
HpyAV	CCTTC	3 cut(s)	47, 253, 475
HpyCH4IV	ACGT	6 cut(s)	61, 113, 380, 410, 443, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 200, 355
HpyF3I	CTNAG	2 cut(s)	338, 582
HpySE526I	ACGT	6 cut(s)	61, 113, 380, 410, 443, 489
Hsp92I	GRCGYC	2 cut(s)	210, 489
Hsp92II	CATG	2 cut(s)	120, 544
HspAI	GCGC	5 cut(s)	4, 225, 286, 420, 533
Ksp22I	TGATCA	1 cut(s)	543
KspI	CCGCGG	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	543, 578
LmnI	GCTCC	4 cut(s)	77, 310, 355, 363
Lsp1109I	GCAGC	3 cut(s)	187, 295, 499
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	6 cut(s)	61, 113, 380, 410, 443, 489
MaeIII	GTNAC	2 cut(s)	520, 527
MalI	GATC	2 cut(s)	545, 580
MboI	GATC	2 cut(s)	543, 578
MboII	GAAGA	1 cut(s)	511
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	567
MspI	CCGG	3 cut(s)	170, 385, 550
MspR9I	CCNGG	4 cut(s)	170, 191, 197, 461
MvaI	CCWGG	3 cut(s)	191, 197, 461
MvnI	CGCG	5 cut(s)	186, 225, 288, 533, 567
MwoI	GCNNNNNNNGC	3 cut(s)	170, 200, 355
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	543, 578
NlaIII	CATG	2 cut(s)	120, 544
NlaIV	GGNNCC	1 cut(s)	458
NruI	TCGCGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
Pfl23II	CGTACG	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	9 cut(s)	55, 58, 202, 282, 285, 344, 424, 514, 566
PleI	GAGTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	2 cut(s)	62, 444
PshAI	GACNNNNGTC	2 cut(s)	413, 444
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	189, 195, 459
PspCI	CACGTG	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	3 cut(s)	189, 195, 459
PspLI	CGTACG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	3 cut(s)	172, 193, 573
PsuI	RGATCY	1 cut(s)	578
PsyI	GACNNNGTC	1 cut(s)	326
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	360
SacII	CCGCGG	1 cut(s)	568
SalI	GTCGAC	2 cut(s)	329, 467
SatI	GCNGC	9 cut(s)	54, 57, 201, 281, 284, 343, 423, 513, 565
Sau3AI	GATC	2 cut(s)	543, 578
Sau96I	GGNCC	3 cut(s)	172, 193, 573
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	170, 191, 197, 461
SduI	GDGCHC	1 cut(s)	360
Sfr303I	CCGCGG	1 cut(s)	568
SgrBI	CCGCGG	1 cut(s)	568
SgrDI	CGTCGACG	1 cut(s)	329
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	168, 189, 195, 459
TaiI	ACGT	6 cut(s)	64, 116, 383, 413, 446, 492
TaqI	TCGA	4 cut(s)	330, 450, 468, 555
TauI	GCSGC	6 cut(s)	56, 59, 283, 345, 425, 567
TseI	GCWGC	3 cut(s)	200, 283, 512
TspGWI	ACGGA	2 cut(s)	98, 316
Tth111I	GACNNNGTC	1 cut(s)	326
XagI	CCTNNNNNAGG	2 cut(s)	194, 371
XmiI	GTMKAC	2 cut(s)	330, 468
XspI	CTAG	1 cut(s)	516
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.