Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008617

Physical Location & Seq

Genomic Coordinates Forward (+)

565628 .. 571058

Gene Structure 5431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCGCACCCTCCTCACTCTGAGGCCACCACCACCGCCATCTGTGCTCCTTCCATGCCTCTCTTCCTTATCCCCACCTCCTTCTTTCCTCTTCAGCTTCAGACCCAACAAGCGTTTTCACTTCCTCAGCCCATGTTCTTCTCTCAAACAGTCCAAGAAGAAGTCTCTCCAGAAGACCACCAGGCCTCCCAATGCTCCTCCTCCTCAGAGCCAGCGCTGGTTCTTCAATAACCCAAAGGGTGACGAAGGTGGTGAAATTGAAAAGACTGATGAGGCTGACAGTGCCTTCGGCGGTGACACTGCGCTTAAAGGTACTGTTTTGGCCGGTGTTTTCTTGGTTGGTATTGTTGGTGGGTTTGCCGGTGTTGGGTATTTGTACAAGGACCAGATCAACGCCTTCTTGAATCAGTTTTCCACTTTCATTGAAGGTTATGGTCCAGCTGGATATGCTTTGTTTGTAGCAGTTTATGCAGGACTGGAAATCCTTGCGATTCCAGCTGTTCCATTGACCATGTCAGCTGGTCTTCTTTTTGGCACAGTTACTGGCTCTATTCTAGTCTCCATAAGCGGAACAGTGGCTGCTAGTGTTGCTTTTCTCATTGCTAGATATTTTGCTCGTGAGCGCATTCTTAAAATGGTTGAGGGAAACAAAAAATTTCTTGCAATTGATAAGGCTATTGGAGAAAACGGATTTAGAGTTGTCACTCTCCTTCGCTTGAGCCCTTTGCTTCCTTTTTCTTTGGGGAACTATTTATACGGATTGACATCTGTAAAGTTTGTTCCATACGTGTTGGGAAGTTGGCTGGGGATGCTTCCTGGAACATGGGCTTATGTGAGCGCTGGTGCATTTGGGCGAGCCATAATTCAAGAAGAATCTGAGCTTGGTTTACCTGGAGGAAATGGTCAGCTACTGACACTAGGGCTTGGACTGTTAGCCACAGCATTGGCTGCTGCTTATGTTACACGATTAGCAAAGGATGCTGTAAAAGATATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

333

Amino Acids

35.39

Weight (kDa)

9.48

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22850 AT1G22850
fragaria_vesca	FvH4_2g00910 FvH4_2g00910 FvH4_2g00910
malus_domestica	MD05G1004400.v1.1 MD10G1004900.v1.1
prunus_persica	Prupe.8G007400_v2.0.a1
pyrus_communis	pycom05g00370 pycom10g00390
rosa_chinensis	RchiOBHm_Chr6g0251261
rosa_laevigata	RLG00000015469
rosa_multiflora	Rmu_sc0001637.1_g000005 Rmu_sc0015396.1_g000006
rosa_roxburghii	Rroxscaffold_7G00216870
rosa_rugosa	Rorug05G0501300
rosa_samantha	Rh6AG010700 Rh6BG001300 Rh6CG007700 Rh6DG008100
rosa_wichuraiana	Rw6G001030 Rw6G001140 Rw6G001210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	3 cut(s)	35, 291, 567
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	76, 82
AfaI	GTAC	2 cut(s)	313, 377
AfeI	AGCGCT	2 cut(s)	215, 838
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	5 cut(s)	226, 260, 403, 425, 866
AjnI	CCWGG	3 cut(s)	179, 814, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AluBI	AGCT	6 cut(s)	96, 440, 497, 518, 880, 907
AluI	AGCT	6 cut(s)	96, 440, 497, 518, 880, 907
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	168, 562
AlwNI	CAGNNNCTG	3 cut(s)	542, 578, 910
Aor51HI	AGCGCT	2 cut(s)	215, 838
AoxI	GGCC	3 cut(s)	23, 182, 321
ApeKI	GCWGC	3 cut(s)	578, 947, 950
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	5 cut(s)	6, 216, 304, 624, 839
AspS9I	GGNCC	2 cut(s)	382, 434
AsuHPI	GGTGA	3 cut(s)	251, 263, 305
AvaII	GGWCC	2 cut(s)	382, 434
BanII	GRGCYC	1 cut(s)	722
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	179, 515
Bbv12I	GWGCWC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	565, 934, 937
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	3 cut(s)	181, 816, 891
BcoDI	GTCTC	2 cut(s)	168, 562
BfaI	CTAG	4 cut(s)	554, 582, 603, 917
BfoI	RGCGCY	2 cut(s)	217, 840
BisI	GCNGC	3 cut(s)	579, 948, 951
BlsI	GCNGC	3 cut(s)	580, 949, 952
Bme1390I	CCNGG	3 cut(s)	181, 816, 891
Bme18I	GGWCC	2 cut(s)	382, 434
BmgT120I	GGNCC	2 cut(s)	382, 434
BmrFI	CCNGG	3 cut(s)	181, 816, 891
BmsI	GCATC	2 cut(s)	798, 967
BpiI	GAAGAC	2 cut(s)	179, 515
BpmI	CTGGAG	2 cut(s)	152, 912
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	993
BsaAI	YACGTR	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	2 cut(s)	323, 359
Bse1I	ACTGG	2 cut(s)	480, 547
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	763
BseBI	CCWGG	3 cut(s)	181, 816, 891
BseCI	ATCGAT	1 cut(s)	993
BseGI	GGATG	2 cut(s)	813, 982
BseJI	GATNNNNATC	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	4 cut(s)	11, 139, 218, 867
BseNI	ACTGG	2 cut(s)	480, 547
BseRI	GAGGAG	3 cut(s)	186, 189, 192
BseXI	GCAGC	3 cut(s)	565, 934, 937
BseYI	CCCAGC	1 cut(s)	802
BshFI	GGCC	3 cut(s)	25, 184, 323
BshVI	ATCGAT	1 cut(s)	993
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	324, 360
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	168, 562
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	25, 184, 323
Bsp1286I	GDGCHC	2 cut(s)	48, 722
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	35, 291, 567
BspANI	GGCC	3 cut(s)	25, 184, 323
BspCNI	CTCAG	4 cut(s)	12, 138, 217, 868
BspDI	ATCGAT	1 cut(s)	993
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	2 cut(s)	323, 359
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	480, 547
BssAI	RCCGGY	2 cut(s)	323, 359
BssMI	GATC	1 cut(s)	387
BssSI	CACGAG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	3 cut(s)	181, 816, 891
Bst4CI	ACNGT	6 cut(s)	150, 281, 316, 538, 574, 930
Bst6I	CTCTTC	2 cut(s)	67, 95
BstAPI	GCANNNNNTGC	3 cut(s)	467, 947, 977
BstAUI	TGTACA	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	212, 855
BstDEI	CTNAG	4 cut(s)	20, 125, 204, 876
BstF5I	GGATG	2 cut(s)	813, 982
BstH2I	RGCGCY	2 cut(s)	217, 840
BstHHI	GCGC	5 cut(s)	6, 216, 304, 624, 839
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	2 cut(s)	168, 562
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 281, 446, 467, 494, 587, 808, 947, 977
BstNI	CCWGG	3 cut(s)	181, 816, 891
BstSCI	CCNGG	3 cut(s)	179, 814, 889
BstV1I	GCAGC	3 cut(s)	565, 934, 937
BstV2I	GAAGAC	2 cut(s)	179, 515
BstXI	CCANNNNNNTGG	1 cut(s)	943
Bsu15I	ATCGAT	1 cut(s)	993
BsuRI	GGCC	3 cut(s)	25, 184, 323
BsuTUI	ATCGAT	1 cut(s)	993
BtsCI	GGATG	2 cut(s)	813, 982
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	286, 297, 579
Cac8I	GCNNGC	2 cut(s)	212, 855
CaiI	CAGNNNCTG	3 cut(s)	542, 578, 910
CfoI	GCGC	5 cut(s)	6, 216, 304, 624, 839
Cfr10I	RCCGGY	2 cut(s)	323, 359
Cfr13I	GGNCC	2 cut(s)	382, 434
ClaI	ATCGAT	1 cut(s)	993
Csp6I	GTAC	2 cut(s)	312, 376
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	4 cut(s)	54, 132, 511, 822
CviQI	GTAC	2 cut(s)	312, 376
DdeI	CTNAG	4 cut(s)	20, 125, 204, 876
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	67, 95
EarI	CTCTTC	2 cut(s)	67, 95
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	2 cut(s)	382, 434
Eco47III	AGCGCT	2 cut(s)	215, 838
Eco57I	CTGAAG	2 cut(s)	76, 82
EcoRII	CCWGG	3 cut(s)	179, 814, 889
EcoRV	GATATC	1 cut(s)	991
EcoT38I	GRGCYC	1 cut(s)	722
FaeI	CATG	4 cut(s)	57, 135, 514, 825
FatI	CATG	4 cut(s)	53, 131, 510, 821
Fnu4HI	GCNGC	3 cut(s)	579, 948, 951
FokI	GGATG	2 cut(s)	820, 989
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	579, 948, 951
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	4 cut(s)	554, 582, 603, 917
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	5 cut(s)	5, 215, 303, 623, 838
GluI	GCNGC	3 cut(s)	579, 948, 951
GsaI	CCCAGC	1 cut(s)	806
GsuI	CTGGAG	2 cut(s)	152, 912
HaeII	RGCGCY	2 cut(s)	217, 840
HaeIII	GGCC	3 cut(s)	25, 184, 323
HapII	CCGG	2 cut(s)	324, 360
HhaI	GCGC	5 cut(s)	6, 216, 304, 624, 839
Hin1II	CATG	4 cut(s)	57, 135, 514, 825
Hin6I	GCGC	5 cut(s)	4, 214, 302, 622, 837
HinP1I	GCGC	5 cut(s)	4, 214, 302, 622, 837
HinfI	GANTC	3 cut(s)	403, 490, 872
HpaII	CCGG	2 cut(s)	324, 360
HphI	GGTGA	3 cut(s)	251, 263, 305
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	4 cut(s)	21, 101, 207, 877
Hpy188III	TCNNGA	4 cut(s)	169, 400, 617, 866
Hpy8I	GTNNAC	1 cut(s)	887
HpyAV	CCTTC	7 cut(s)	59, 90, 239, 295, 406, 419, 719
HpyCH4III	ACNGT	6 cut(s)	150, 281, 316, 538, 574, 930
HpyCH4IV	ACGT	1 cut(s)	786
HpyCH4V	TGCA	3 cut(s)	470, 662, 845
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 281, 446, 467, 494, 587, 808, 947, 977
HpyF3I	CTNAG	4 cut(s)	20, 125, 204, 876
HpySE526I	ACGT	1 cut(s)	786
Hsp92II	CATG	4 cut(s)	57, 135, 514, 825
HspAI	GCGC	5 cut(s)	4, 214, 302, 622, 837
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	51, 199
Lsp1109I	GCAGC	3 cut(s)	565, 934, 937
LweI	GCATC	2 cut(s)	798, 967
MaeI	CTAG	4 cut(s)	554, 582, 603, 917
MaeII	ACGT	1 cut(s)	786
MaeIII	GTNAC	5 cut(s)	239, 293, 538, 700, 958
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	8 cut(s)	54, 82, 129, 169, 184, 214, 515, 881
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	2 cut(s)	48, 722
MluCI	AATT	4 cut(s)	255, 653, 663, 861
MseI	TTAA	2 cut(s)	306, 630
MspA1I	CMGCKG	3 cut(s)	440, 497, 518
MspI	CCGG	2 cut(s)	324, 360
MspR9I	CCNGG	3 cut(s)	181, 816, 891
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	3 cut(s)	181, 816, 891
MwoI	GCNNNNNNNGC	9 cut(s)	43, 281, 446, 467, 494, 587, 808, 947, 977
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	4 cut(s)	57, 135, 514, 825
NmuCI	GTSAC	3 cut(s)	239, 293, 700
NsbI	TGCGCA	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	403, 490, 872
PflFI	GACNNNGTC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	814
PkrI	GCNGC	3 cut(s)	580, 949, 952
Ppu21I	YACGTR	1 cut(s)	787
Psp6I	CCWGG	3 cut(s)	179, 814, 889
PspFI	CCCAGC	1 cut(s)	802
PspGI	CCWGG	3 cut(s)	179, 814, 889
PspPI	GGNCC	2 cut(s)	382, 434
PsrI	GAACNNNNNNTAC	4 cut(s)	737, 762, 769, 794
PstNI	CAGNNNCTG	3 cut(s)	542, 578, 910
PsyI	GACNNNGTC	1 cut(s)	511
PvuII	CAGCTG	3 cut(s)	440, 497, 518
RsaI	GTAC	2 cut(s)	313, 377
RsaNI	GTAC	2 cut(s)	312, 376
SaqAI	TTAA	2 cut(s)	306, 630
SatI	GCNGC	3 cut(s)	579, 948, 951
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	2 cut(s)	382, 434
ScrFI	CCNGG	3 cut(s)	181, 816, 891
SduI	GDGCHC	2 cut(s)	48, 722
SfaNI	GCATC	2 cut(s)	798, 967
SinI	GGWCC	2 cut(s)	382, 434
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	4 cut(s)	255, 653, 663, 861
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	3 cut(s)	35, 291, 567
SspMI	CTAG	4 cut(s)	554, 582, 603, 917
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	3 cut(s)	179, 814, 889
TaaI	ACNGT	6 cut(s)	150, 281, 316, 538, 574, 930
TaiI	ACGT	1 cut(s)	789
TaqI	TCGA	1 cut(s)	993
TasI	AATT	4 cut(s)	255, 653, 663, 861
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	403, 490, 872
Tru1I	TTAA	2 cut(s)	306, 630
Tru9I	TTAA	2 cut(s)	306, 630
TscAI	CASTG	3 cut(s)	286, 304, 579
TseFI	GTSAC	3 cut(s)	239, 293, 700
TseI	GCWGC	3 cut(s)	578, 947, 950
Tsp45I	GTSAC	3 cut(s)	239, 293, 700
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	2 cut(s)	702, 771
TspRI	CASTG	3 cut(s)	286, 304, 579
Tth111I	GACNNNGTC	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	382, 434
XapI	RAATTY	1 cut(s)	653
XspI	CTAG	4 cut(s)	554, 582, 603, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.