pycom05g00370

TVP38 TMEM64 family membrane protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
408917 .. 415530
6614 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00370.4

Sequence Viewer

Length: 1410 bp
ATGCAGTTGCTGATAAAATTAGTAAGTGAAAACCCAATCGATGTTCCTGTGTCATCGATACAACATTTGAGGAGACGAACACTATATTGTGGAAACAGTCTTACATTCTCCGTACCAGGTTTATTGACCAAAGAAATCCGGGACTGCTTTAAGAAAGGTATGATGTGGAACATTAATTTGCATGTAACACTCAAAAGTGAATGTATGTGGTTCCTTGTTACAGACGGCGAAATAATGCAGTTGCTGATCAAATTAGTAATTATGTTTTGCAGGAGCCCCACACTCAATCCAAACATCAAATCAAAATTTCCAGTCCTTTCCATTTCCCTTATAAATCACAATAATTATCCATCTTACCATACATGGCAGTGCTCTGCCTCCCGCTCTTATCCTACACACTACCCACCACTTAAAATGCGCACCCTTCTCATTCTGAGGCCGCCACCACCGTCGTCGTCGCTCCTCTTCCCATGCCTCTCCGCCCTCTCTCCTCCCTCCTCCGTCTTCCTCTTCAGCTCCCGACCCAACAGGCGCTCCCACTTCCTCACCCCGTGCTCTTCTCTCAAGCAGTCCAAGAAGAAGTCCCTCCAGAACACCCCCAATGCTCCTCCGCAGAGCCAGCGCTGGTTCTTCAACACCCCCAAGAACGACGACGGCGCTGAAATTGAAAAGACCGGTGAGGCTGACGACGGCGCCTTCGACGGCGACACTGCGTTTAAAGGCACTGTTTTGGCCGGTGTTGTCCTGGTCGGTATTGTTGGTGGGTTCGCCGGTGTTGGGTATGTGTACAAGGATCAAATCAACGCCTTCTTGAATCAGTTTTCCACTTTCATTGAAGGTTATGGTCCAGCTGGATATGCTTTGTTTGTTGCAGTTTATGCCGGACTGGAAATCCTTGCGATTCCAGCAGTTCCATTGACCATGTCAGCTGGTCTTCTCTTTGGCACAGTTGTTGGTTCTATTCTCGTCTCTATAAGCAGCACGGTTGCTGCTAGTGTTGCCTTTTTGATTGCTAGATATTTTGCTCGTGAGCGTATTCTTAAAATGGTTGAGGGAAACAAAAAGTTTCTTGCCATTGATAAGGCTATTGGAGAAAATGGATTTAGAGTTGTCACTCTCCTTCGCTTGAGCCCTTTGCTTCCCTTTTCATTGGGGAACTATTTATATGGATTGACATCTGTAAAGTTTGTACCATACGTGTTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTACGTAAGTGCTGGTGCATTTGGGCGAGCTATAATTCAAGAAGAATCTGATGTTGGTTTGCCTGGAGGAAATGGTCAGCTCTTGACACTAGGGCTTGGACTGTTAGCCACAGCATTGGCTGCTGCTTATGTAACACGACTAGCAAAGGATGCTGTAAAAGATATCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

51.12

Weight (kDa)

9.4

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 692
AccBSI CCGCTC 1 cut(s) 384
AciI CCGC 4 cut(s) 382, 440, 480, 611
AclWI GGATC 1 cut(s) 801
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 693
AdeI CACNNNGTG 1 cut(s) 552
AfaI GTAC 3 cut(s) 114, 788, 1191
AfeI AGCGCT 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 777
AflIII ACRYGT 1 cut(s) 1197
AgeI ACCGGT 1 cut(s) 674
AgsI TTSAA 5 cut(s) 634, 668, 814, 836, 1277
AjnI CCWGG 4 cut(s) 115, 744, 1225, 1300
AjuI GAANNNNNNNTTGG 2 cut(s) 1275, 1307
AluBI AGCT 5 cut(s) 516, 851, 929, 1268, 1318
AluI AGCT 5 cut(s) 516, 851, 929, 1268, 1318
Alw21I GWGCWC 2 cut(s) 374, 557
Alw26I GTCTC 2 cut(s) 67, 973
AlwI GGATC 1 cut(s) 801
AlwNI CAGNNNCTG 2 cut(s) 10, 244
Aor51HI AGCGCT 1 cut(s) 623
AoxI GGCC 2 cut(s) 437, 732
ApeKI GCWGC 4 cut(s) 978, 989, 1358, 1361
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AseI ATTAAT 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 674
AspLEI GCGC 5 cut(s) 420, 534, 624, 659, 695
AspS9I GGNCC 1 cut(s) 845
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 538, 689
AvaII GGWCC 1 cut(s) 845
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 2 cut(s) 278, 1133
BauI CACGAG 1 cut(s) 1026
BbsI GAAGAC 2 cut(s) 496, 926
Bbv12I GWGCWC 2 cut(s) 374, 557
BbvI GCAGC 4 cut(s) 976, 990, 1345, 1348
BccI CCATC 1 cut(s) 358
BceAI ACGGC 4 cut(s) 241, 670, 706, 718
BciT130I CCWGG 4 cut(s) 117, 746, 1227, 1302
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 67, 973
BfaI CTAG 4 cut(s) 993, 1014, 1328, 1379
BfoI RGCGCY 4 cut(s) 535, 625, 660, 696
BisI GCNGC 5 cut(s) 440, 979, 990, 1359, 1362
BlsI GCNGC 5 cut(s) 441, 980, 991, 1360, 1363
Bme1390I CCNGG 5 cut(s) 117, 140, 746, 1227, 1302
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 3 cut(s) 212, 275, 694
BmrFI CCNGG 5 cut(s) 117, 140, 746, 1227, 1302
BmsI GCATC 2 cut(s) 1209, 1378
BpiI GAAGAC 2 cut(s) 496, 926
BpmI CTGGAG 2 cut(s) 572, 1323
BpuEI CTTGAG 2 cut(s) 548, 1147
BpuMI CCSGG 1 cut(s) 140
Bsa29I ATCGAT 3 cut(s) 39, 56, 1404
BsaAI YACGTR 2 cut(s) 1198, 1243
BsaBI GATNNNNATC 1 cut(s) 1174
BsaHI GRCGYC 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 777
Bse118I RCCGGY 3 cut(s) 674, 734, 770
Bse1I ACTGG 2 cut(s) 311, 891
Bse8I GATNNNNATC 1 cut(s) 1174
BseBI CCWGG 4 cut(s) 117, 746, 1227, 1302
BseCI ATCGAT 3 cut(s) 39, 56, 1404
BseGI GGATG 2 cut(s) 1224, 1393
BseJI GATNNNNATC 1 cut(s) 1174
BseLI CCNNNNNNNGG 1 cut(s) 777
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 311, 891
BseRI GAGGAG 5 cut(s) 85, 452, 480, 487, 597
BseXI GCAGC 4 cut(s) 976, 990, 1345, 1348
BshFI GGCC 2 cut(s) 439, 734
BshNI GGYRCC 1 cut(s) 692
BshTI ACCGGT 1 cut(s) 674
BshVI ATCGAT 3 cut(s) 39, 56, 1404
BsiHKAI GWGCWC 2 cut(s) 374, 557
BsiSI CCGG 5 cut(s) 139, 675, 735, 771, 882
BslFI GGGAC 2 cut(s) 155, 568
BslI CCNNNNNNNGG 1 cut(s) 777
BsmAI GTCTC 2 cut(s) 67, 973
BsmBI CGTCTC 2 cut(s) 67, 973
BsmFI GGGAC 2 cut(s) 155, 568
BsnI GGCC 2 cut(s) 439, 734
Bsp1286I GDGCHC 4 cut(s) 278, 374, 557, 1133
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 2 cut(s) 246, 793
BspACI CCGC 4 cut(s) 382, 440, 480, 611
BspANI GGCC 2 cut(s) 439, 734
BspCNI CTCAG 1 cut(s) 426
BspDI ATCGAT 3 cut(s) 39, 56, 1404
BspLI GGNNCC 3 cut(s) 212, 275, 694
BspPI GGATC 1 cut(s) 801
BspQI GCTCTTC 1 cut(s) 562
BspT107I GGYRCC 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 384
BsrFI RCCGGY 3 cut(s) 674, 734, 770
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 2 cut(s) 311, 891
BssAI RCCGGY 3 cut(s) 674, 734, 770
BssMI GATC 2 cut(s) 246, 793
BssNI GRCGYC 1 cut(s) 693
BssSI CACGAG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 4 cut(s) 117, 746, 1227, 1302
Bst4CI ACNGT 6 cut(s) 98, 450, 727, 949, 985, 1341
Bst6I CTCTTC 3 cut(s) 470, 515, 562
BstACI GRCGYC 1 cut(s) 693
BstAPI GCANNNNNTGC 3 cut(s) 878, 1358, 1388
BstAUI TGTACA 1 cut(s) 786
BstBAI YACGTR 2 cut(s) 1198, 1243
BstC8I GCNNGC 2 cut(s) 620, 1266
BstDEI CTNAG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 1224, 1393
BstH2I RGCGCY 4 cut(s) 535, 625, 660, 696
BstHHI GCGC 5 cut(s) 420, 534, 624, 659, 695
BstKTI GATC 2 cut(s) 249, 796
BstMAI GTCTC 2 cut(s) 67, 973
BstMBI GATC 2 cut(s) 246, 793
BstMWI GCNNNNNNNGC 7 cut(s) 619, 857, 878, 905, 998, 1358, 1388
BstNI CCWGG 4 cut(s) 117, 746, 1227, 1302
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 5 cut(s) 115, 138, 744, 1225, 1300
BstSNI TACGTA 1 cut(s) 1243
BstV1I GCAGC 4 cut(s) 976, 990, 1345, 1348
BstV2I GAAGAC 2 cut(s) 496, 926
BstXI CCANNNNNNTGG 2 cut(s) 1233, 1354
Bsu15I ATCGAT 3 cut(s) 39, 56, 1404
BsuRI GGCC 2 cut(s) 439, 734
BsuTUI ATCGAT 3 cut(s) 39, 56, 1404
BtsCI GGATG 2 cut(s) 1224, 1393
BtsI GCAGTG 2 cut(s) 374, 708
BtsIMutI CAGTG 3 cut(s) 374, 708, 723
Cac8I GCNNGC 2 cut(s) 620, 1266
CaiI CAGNNNCTG 2 cut(s) 10, 244
CfoI GCGC 5 cut(s) 420, 534, 624, 659, 695
Cfr10I RCCGGY 3 cut(s) 674, 734, 770
Cfr13I GGNCC 1 cut(s) 845
ClaI ATCGAT 3 cut(s) 39, 56, 1404
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 3 cut(s) 113, 787, 1190
CspAI ACCGGT 1 cut(s) 674
CspCI CAANNNNNGTGG 2 cut(s) 814, 849
CviAII CATG 5 cut(s) 182, 363, 471, 922, 1233
CviQI GTAC 3 cut(s) 113, 787, 1190
DdeI CTNAG 1 cut(s) 434
DinI GGCGCC 1 cut(s) 694
DpnI GATC 2 cut(s) 248, 795
DpnII GATC 2 cut(s) 246, 793
DraI TTTAAA 1 cut(s) 718
DraIII CACNNNGTG 1 cut(s) 552
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 3 cut(s) 470, 515, 562
EarI CTCTTC 3 cut(s) 470, 515, 562
EciI GGCGGA 1 cut(s) 469
Eco105I TACGTA 1 cut(s) 1243
Eco24I GRGCYC 2 cut(s) 278, 1133
Eco32I GATATC 1 cut(s) 1402
Eco47I GGWCC 1 cut(s) 845
Eco47III AGCGCT 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 496
EcoRII CCWGG 4 cut(s) 115, 744, 1225, 1300
EcoRV GATATC 1 cut(s) 1402
EcoT38I GRGCYC 2 cut(s) 278, 1133
EgeI GGCGCC 1 cut(s) 694
EheI GGCGCC 1 cut(s) 694
Esp3I CGTCTC 2 cut(s) 67, 973
FaeI CATG 5 cut(s) 185, 366, 474, 925, 1236
FaqI GGGAC 2 cut(s) 155, 568
FatI CATG 5 cut(s) 181, 362, 470, 921, 1232
FauI CCCGC 1 cut(s) 389
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 440, 979, 990, 1359, 1362
FokI GGATG 2 cut(s) 1231, 1400
FriOI GRGCYC 2 cut(s) 278, 1133
Fsp4HI GCNGC 5 cut(s) 440, 979, 990, 1359, 1362
FspAI RTGCGCAY 1 cut(s) 419
FspBI CTAG 4 cut(s) 993, 1014, 1328, 1379
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 5 cut(s) 419, 533, 623, 658, 694
GluI GCNGC 5 cut(s) 440, 979, 990, 1359, 1362
GsuI CTGGAG 2 cut(s) 572, 1323
HaeII RGCGCY 4 cut(s) 535, 625, 660, 696
HaeIII GGCC 2 cut(s) 439, 734
HapII CCGG 5 cut(s) 139, 675, 735, 771, 882
HhaI GCGC 5 cut(s) 420, 534, 624, 659, 695
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 5 cut(s) 185, 366, 474, 925, 1236
Hin6I GCGC 5 cut(s) 418, 532, 622, 657, 693
HinP1I GCGC 5 cut(s) 418, 532, 622, 657, 693
HinfI GANTC 3 cut(s) 814, 901, 1283
HpaII CCGG 5 cut(s) 139, 675, 735, 771, 882
HphI GGTGA 2 cut(s) 538, 689
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 2 cut(s) 435, 1288
Hpy188III TCNNGA 6 cut(s) 519, 589, 811, 1028, 1277, 1321
Hpy8I GTNNAC 1 cut(s) 787
Hpy99I CGWCG 7 cut(s) 454, 457, 460, 653, 656, 692, 704
HpyAV CCTTC 5 cut(s) 434, 706, 817, 830, 1130
HpyCH4III ACNGT 6 cut(s) 98, 450, 727, 949, 985, 1341
HpyCH4IV ACGT 2 cut(s) 1197, 1242
HpyCH4V TGCA 6 cut(s) 4, 181, 238, 270, 872, 1256
HpyF10VI GCNNNNNNNGC 7 cut(s) 619, 857, 878, 905, 998, 1358, 1388
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 2 cut(s) 1197, 1242
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 5 cut(s) 185, 366, 474, 925, 1236
HspAI GCGC 5 cut(s) 418, 532, 622, 657, 693
KasI GGCGCC 1 cut(s) 692
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 246, 793
LguI GCTCTTC 1 cut(s) 562
LmnI GCTCC 5 cut(s) 273, 465, 521, 539, 610
Lsp1109I GCAGC 4 cut(s) 976, 990, 1345, 1348
LweI GCATC 2 cut(s) 1209, 1378
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 4 cut(s) 993, 1014, 1328, 1379
MaeII ACGT 2 cut(s) 1197, 1242
MaeIII GTNAC 4 cut(s) 184, 217, 1111, 1369
MalI GATC 2 cut(s) 248, 795
MbiI CCGCTC 1 cut(s) 384
MboI GATC 2 cut(s) 246, 793
MboII GAAGA 8 cut(s) 457, 496, 502, 549, 589, 622, 926, 1292
MhlI GDGCHC 4 cut(s) 278, 374, 557, 1133
MluCI AATT 8 cut(s) 17, 175, 251, 258, 305, 343, 663, 1272
Mly113I GGCGCC 1 cut(s) 693
MseI TTAA 5 cut(s) 150, 174, 411, 717, 1041
MslI CAYNNNNRTG 1 cut(s) 367
MspA1I CMGCKG 2 cut(s) 851, 929
MspI CCGG 5 cut(s) 139, 675, 735, 771, 882
MspR9I CCNGG 5 cut(s) 117, 140, 746, 1227, 1302
MvaI CCWGG 4 cut(s) 117, 746, 1227, 1302
MwoI GCNNNNNNNGC 7 cut(s) 619, 857, 878, 905, 998, 1358, 1388
NarI GGCGCC 1 cut(s) 693
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 246, 793
NlaIII CATG 5 cut(s) 185, 366, 474, 925, 1236
NlaIV GGNNCC 3 cut(s) 212, 275, 694
NmuCI GTSAC 1 cut(s) 1111
NsbI TGCGCA 1 cut(s) 419
NspI RCATGY 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PfeI GAWTC 3 cut(s) 814, 901, 1283
PflFI GACNNNGTC 1 cut(s) 922
PfoI TCCNGGA 2 cut(s) 138, 1225
PinAI ACCGGT 1 cut(s) 674
PkrI GCNGC 5 cut(s) 441, 980, 991, 1360, 1363
PluTI GGCGCC 1 cut(s) 696
Ppu21I YACGTR 2 cut(s) 1198, 1243
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 332
Psp6I CCWGG 4 cut(s) 115, 744, 1225, 1300
PspGI CCWGG 4 cut(s) 115, 744, 1225, 1300
PspN4I GGNNCC 3 cut(s) 212, 275, 694
PspPI GGNCC 1 cut(s) 845
PstNI CAGNNNCTG 2 cut(s) 10, 244
PsyI GACNNNGTC 1 cut(s) 922
PvuII CAGCTG 2 cut(s) 851, 929
RsaI GTAC 3 cut(s) 114, 788, 1191
RsaNI GTAC 3 cut(s) 113, 787, 1190
RseI CAYNNNNRTG 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 562
SaqAI TTAA 5 cut(s) 150, 174, 411, 717, 1041
SatI GCNGC 5 cut(s) 440, 979, 990, 1359, 1362
Sau3AI GATC 2 cut(s) 246, 793
Sau96I GGNCC 1 cut(s) 845
ScrFI CCNGG 5 cut(s) 117, 140, 746, 1227, 1302
SduI GDGCHC 4 cut(s) 278, 374, 557, 1133
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 2 cut(s) 1209, 1378
SfoI GGCGCC 1 cut(s) 694
SgrAI CRCCGGYG 1 cut(s) 770
SinI GGWCC 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 367
SmlI CTYRAG 2 cut(s) 563, 1126
SmoI CTYRAG 2 cut(s) 563, 1126
SnaBI TACGTA 1 cut(s) 1243
Sse9I AATT 8 cut(s) 17, 175, 251, 258, 305, 343, 663, 1272
SsiI CCGC 4 cut(s) 382, 440, 480, 611
SspDI GGCGCC 1 cut(s) 692
SspMI CTAG 4 cut(s) 993, 1014, 1328, 1379
StyD4I CCNGG 5 cut(s) 115, 138, 744, 1225, 1300
TaaI ACNGT 6 cut(s) 98, 450, 727, 949, 985, 1341
TaiI ACGT 2 cut(s) 1200, 1245
TaqI TCGA 4 cut(s) 39, 56, 699, 1404
TasI AATT 8 cut(s) 17, 175, 251, 258, 305, 343, 663, 1272
TatI WGTACW 1 cut(s) 786
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 3 cut(s) 814, 901, 1283
Tru1I TTAA 5 cut(s) 150, 174, 411, 717, 1041
Tru9I TTAA 5 cut(s) 150, 174, 411, 717, 1041
TscAI CASTG 3 cut(s) 374, 715, 730
TseFI GTSAC 1 cut(s) 1111
TseI GCWGC 4 cut(s) 978, 989, 1358, 1361
Tsp45I GTSAC 1 cut(s) 1111
TspDTI ATGAA 2 cut(s) 820, 1137
TspGWI ACGGA 2 cut(s) 100, 490
TspRI CASTG 3 cut(s) 374, 715, 730
Tth111I GACNNNGTC 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 845
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 185
XspI CTAG 4 cut(s) 993, 1014, 1328, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.