Rroxscaffold_7G00216870

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008617
Physical Location & Seq
Reverse (-)
67522043 .. 67527270
5228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216870.1

Sequence Viewer

Length: 960 bp
ATGCGCACCCTCTTCCTCACTCTGAGGCCACCACCACCATCTCCGCCGTGCCTCTCTCCCTTCTCCTTCTCCTCCTCCGCCTCCCACCCTTCTTTCCTCTTCAAACCCAACCACCACCGCTTCCACTTCCTCTCGCCATGCTCCTCTCTCAAGCAGACCAACAACAAGACCAGCCGCCTCCAGAAGACCACCGCTGCTCCGCCGCAGAGCCTCAAGTGGCTCTTCAATAATCCCAAGAGTGACGACGGCGGCGAGATTGAAAAAATCGGCGGCGGCGCCGGCGGCGGTGATGATGACGAGGGCGAGGGTGGGTTGGCGCTTAAAGGTACTGTCTTGGCGGGGCTGCTCTTGGTTGGGCTTGTTGGTGGGTTTGGGGCGGCTGGGTATGTGTACAAGGATCAGGTTAATGCCTTCTTGAATCAGTTTACGACTCTCATTGAAGATTCTTGCGATTCCAGCTGTTCCATTGACCATGTCAGCTGGTCTTCTTTTGGCACAGTTACTGGATCAATTCTAGTCTCTCTAAGCGGAACGGTGGCTGCTAGCGTTGCTTTTCTGATTGCTAGATATTTTGCTCGTGAACGTATTCTTAAAATGGTTGAGGGAAACAAAAAGTTTCTTGCAATTGATAAGGCTATTGGAGAAAATGGCTTCAGAGTTGTTACTCTCCTCCGTTTGAGCCCTTTGCTTCCTTTTTCTCTGGGGAACTATTTATATGGATTGACATCTGTAAAGTTTGTCCCATATGTGTTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTGAGTGCTGGTGCATTTGGGCGAGCCATAATTCAAGAGGAATCTGATGTTGGTTTGCCCGGAGGAAATGGTCAGCTGTTGACACTAGCAGCTGGACTGTTAGTCACAGCATTAGCTGCTGCTTATGTAACACGATTAGCAAAGGATGCTGTAAAAGATATCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

319

Amino Acids

33.8

Weight (kDa)

8.59

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 164 - 269 6.4e-20 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 275
AclWI GGATC 2 cut(s) 405, 514
AcuI CTGAAG 1 cut(s) 637
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 328, 392
AgsI TTSAA 6 cut(s) 103, 226, 260, 418, 440, 827
AhdI GACNNNNNGTC 1 cut(s) 893
AjnI CCWGG 1 cut(s) 775
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 5 cut(s) 459, 480, 868, 884, 908
AluI AGCT 5 cut(s) 459, 480, 868, 884, 908
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 2 cut(s) 405, 514
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 6 cut(s) 194, 343, 539, 881, 908, 911
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 3 cut(s) 6, 278, 319
AsuC2I CCSGG 1 cut(s) 852
AsuHPI GGTGA 1 cut(s) 299
AsuNHI GCTAGC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 683
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 2 cut(s) 191, 477
BbvI GCAGC 6 cut(s) 181, 330, 526, 893, 895, 898
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 31, 262
BciT130I CCWGG 1 cut(s) 777
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 4 cut(s) 515, 543, 564, 878
BfoI RGCGCY 2 cut(s) 279, 320
Bme1390I CCNGG 2 cut(s) 777, 852
BmeRI GACNNNNNGTC 1 cut(s) 893
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 777, 852
BmsI GCATC 2 cut(s) 759, 928
BmtI GCTAGC 1 cut(s) 546
BpiI GAAGAC 2 cut(s) 191, 477
BpmI CTGGAG 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 134, 197
BpuMI CCSGG 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 954
BsaBI GATNNNNATC 1 cut(s) 724
BsaHI GRCGYC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 724
BseBI CCWGG 1 cut(s) 777
BseCI ATCGAT 1 cut(s) 954
BseGI GGATG 2 cut(s) 774, 943
BseJI GATNNNNATC 1 cut(s) 724
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 4 cut(s) 61, 64, 133, 659
BseXI GCAGC 6 cut(s) 181, 330, 526, 893, 895, 898
BseYI CCCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 954
BsiSI CCGG 2 cut(s) 279, 852
BslFI GGGAC 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 683
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 2 cut(s) 397, 506
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 954
BspLI GGNNCC 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 2 cut(s) 405, 514
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 2 cut(s) 397, 506
BssNI GRCGYC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 4 cut(s) 331, 499, 535, 891
Bst6I CTCTTC 3 cut(s) 17, 104, 227
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 2 cut(s) 908, 938
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 280, 544, 816
BstDEI CTNAG 2 cut(s) 23, 524
BstF5I GGATG 2 cut(s) 774, 943
BstH2I RGCGCY 2 cut(s) 279, 320
BstHHI GCGC 3 cut(s) 6, 278, 319
BstKTI GATC 2 cut(s) 400, 509
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 2 cut(s) 397, 506
BstMWI GCNNNNNNNGC 6 cut(s) 279, 282, 456, 548, 908, 938
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 2 cut(s) 775, 850
BstV1I GCAGC 6 cut(s) 181, 330, 526, 893, 895, 898
BstV2I GAAGAC 2 cut(s) 191, 477
BstXI CCANNNNNNTGG 1 cut(s) 783
Bsu15I ATCGAT 1 cut(s) 954
BsuRI GGCC 1 cut(s) 28
BsuTUI ATCGAT 1 cut(s) 954
BtsCI GGATG 2 cut(s) 774, 943
Cac8I GCNNGC 3 cut(s) 280, 544, 816
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 3 cut(s) 6, 278, 319
Cfr10I RCCGGY 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 954
Csp6I GTAC 2 cut(s) 327, 391
CviAII CATG 3 cut(s) 138, 473, 783
CviQI GTAC 2 cut(s) 327, 391
DdeI CTNAG 2 cut(s) 23, 524
DinI GGCGCC 1 cut(s) 277
DpnI GATC 2 cut(s) 399, 508
DpnII GATC 2 cut(s) 397, 506
DriI GACNNNNNGTC 1 cut(s) 893
Eam1104I CTCTTC 3 cut(s) 17, 104, 227
Eam1105I GACNNNNNGTC 1 cut(s) 893
EarI CTCTTC 3 cut(s) 17, 104, 227
EciI GGCGGA 3 cut(s) 33, 67, 189
Eco24I GRGCYC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 952
Eco57I CTGAAG 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 683
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
FaeI CATG 3 cut(s) 141, 476, 786
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 725
FatI CATG 3 cut(s) 137, 472, 782
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 745
FokI GGATG 2 cut(s) 781, 950
FriOI GRGCYC 1 cut(s) 683
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 4 cut(s) 515, 543, 564, 878
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 277, 318
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 2 cut(s) 279, 320
HaeIII GGCC 1 cut(s) 28
HapII CCGG 2 cut(s) 279, 852
HhaI GCGC 3 cut(s) 6, 278, 319
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 141, 476, 786
Hin6I GCGC 3 cut(s) 4, 276, 317
HinP1I GCGC 3 cut(s) 4, 276, 317
HincII GTYRAC 1 cut(s) 873
HindII GTYRAC 1 cut(s) 873
HinfI GANTC 5 cut(s) 418, 430, 443, 452, 833
HpaII CCGG 2 cut(s) 279, 852
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 4 cut(s) 391, 426, 581, 873
Hpy188I TCNGA 4 cut(s) 24, 558, 656, 838
Hpy188III TCNNGA 4 cut(s) 181, 415, 578, 827
Hpy8I GTNNAC 4 cut(s) 391, 426, 581, 873
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 4 cut(s) 70, 76, 99, 421
HpyCH4III ACNGT 4 cut(s) 331, 499, 535, 891
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 2 cut(s) 623, 806
HpyF10VI GCNNNNNNNGC 6 cut(s) 279, 282, 456, 548, 908, 938
HpyF3I CTNAG 2 cut(s) 23, 524
HpySE526I ACGT 1 cut(s) 583
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 141, 476, 786
HspAI GCGC 3 cut(s) 4, 276, 317
KasI GGCGCC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 397, 506
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 146, 202
Lsp1109I GCAGC 6 cut(s) 181, 330, 526, 893, 895, 898
LweI GCATC 2 cut(s) 759, 928
MaeI CTAG 4 cut(s) 515, 543, 564, 878
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 5 cut(s) 239, 499, 661, 895, 919
MalI GATC 2 cut(s) 399, 508
MboI GATC 2 cut(s) 397, 506
MboII GAAGA 6 cut(s) 4, 91, 196, 214, 452, 477
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 3 cut(s) 510, 624, 822
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 424
MreI CGCCGGCG 1 cut(s) 278
MroNI GCCGGC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 321, 405, 591
MspA1I CMGCKG 5 cut(s) 194, 459, 480, 868, 884
MspI CCGG 2 cut(s) 279, 852
MspR9I CCNGG 2 cut(s) 777, 852
MunI CAATTG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 6 cut(s) 279, 282, 456, 548, 908, 938
NaeI GCCGGC 1 cut(s) 280
NarI GGCGCC 1 cut(s) 276
NciI CCSGG 1 cut(s) 852
NdeI CATATG 1 cut(s) 745
NdeII GATC 2 cut(s) 397, 506
NgoMIV GCCGGC 1 cut(s) 278
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 3 cut(s) 141, 476, 786
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 239, 895
NsbI TGCGCA 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 4 cut(s) 418, 443, 452, 833
PflFI GACNNNGTC 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 775
PleI GAGTC 1 cut(s) 424
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 473
PvuII CAGCTG 4 cut(s) 459, 480, 868, 884
RsaI GTAC 2 cut(s) 328, 392
RsaNI GTAC 2 cut(s) 327, 391
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 3 cut(s) 321, 405, 591
Sau3AI GATC 2 cut(s) 397, 506
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 777, 852
SduI GDGCHC 1 cut(s) 683
SetI ASST 8 cut(s) 328, 405, 461, 482, 586, 870, 886, 910
SfaNI GCATC 2 cut(s) 759, 928
SfoI GGCGCC 1 cut(s) 277
SgrAI CRCCGGYG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 149, 212
SmoI CTYRAG 2 cut(s) 149, 212
Sse9I AATT 3 cut(s) 510, 624, 822
SspDI GGCGCC 1 cut(s) 275
SspMI CTAG 4 cut(s) 515, 543, 564, 878
StyD4I CCNGG 2 cut(s) 775, 850
TaaI ACNGT 4 cut(s) 331, 499, 535, 891
TaiI ACGT 1 cut(s) 586
TaqI TCGA 1 cut(s) 954
TasI AATT 3 cut(s) 510, 624, 822
TatI WGTACW 1 cut(s) 390
TauI GCSGC 7 cut(s) 177, 205, 252, 273, 276, 285, 380
TfiI GAWTC 4 cut(s) 418, 443, 452, 833
Tru1I TTAA 3 cut(s) 321, 405, 591
Tru9I TTAA 3 cut(s) 321, 405, 591
TseFI GTSAC 2 cut(s) 239, 895
TseI GCWGC 6 cut(s) 194, 343, 539, 881, 908, 911
Tsp45I GTSAC 2 cut(s) 239, 895
TspGWI ACGGA 1 cut(s) 662
Tth111I GACNNNGTC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 4 cut(s) 515, 543, 564, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.