Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001637.1

Orthogroup ID

OG0008617

Physical Location & Seq

Genomic Coordinates Forward (+)

16252 .. 21200

Gene Structure 4949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001637.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgcgcaccctcttcctcactctgaggccaccaccaccatctccgccgtgcctctctcccttctcctcctcctcctcccacccttctttcctcttcaaacccaaccaccaccgcttccacttcctctcgccatgctcctctctcaagcagaccaagaacaagaccagccgcctccagaagaccgccactgctccgccgcagagcctcaagtggctcttcaataatcccaagagtgacgacggcggcgagattgaaaaaatcggcggcggcggcggcggtggtggtgatgacgagggcgagggtgggttggcgcttaaaggtactgtcttggcggggctgctcttggttgggcttgttggtgggtttggggcggctgggtatgtgtacaaggatcaggttaatgccttcttgaatcagtttacgactctcattgaagggtatggtccagcgggatatgctttgtttgtagcagtttatgcaggactggaaattcttgcgattccagctgttccattgaccatgtcagctggtcttctttttggcacagttactggatcaattctagtctctctaagcggaacggtggctgctagcgttgcttttctgattgctagatattttgctcgtgaacgcattcttaaaatggttgagggaaacaaaaagtttcttgcaattgataaggctattggagaaaatggcttcagagttgttactctcctccgtttgagccctttgcttcctttttctctggggaactatttatatggattgacatctgtaaagtttgtcccatatgtgttgggaagttggttggggatgcttccaggaacatgggcttatgtgagtgctggtgcatttgggcgagccataattcaagaggaatctgatgttggtttgcccggaggaaatggtcagctgttgacactagcagctggactgttagtcacagcattagctgctgcttatgtaacacgattagcaaaggatgctgtaaaagatatcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

335

Amino Acids

35.19

Weight (kDa)

9.3

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22850 AT1G22850
fragaria_vesca	FvH4_2g00910 FvH4_2g00910 FvH4_2g00910
malus_domestica	MD05G1004400.v1.1 MD10G1004900.v1.1
prunus_persica	Prupe.8G007400_v2.0.a1
pyrus_communis	pycom05g00370 pycom10g00390
rosa_chinensis	RchiOBHm_Chr6g0251261
rosa_laevigata	RLG00000015469
rosa_multiflora	Rmu_sc0001637.1_g000005 Rmu_sc0015396.1_g000006
rosa_roxburghii	Rroxscaffold_7G00216870
rosa_rugosa	Rorug05G0501300
rosa_samantha	Rh6AG010700 Rh6BG001300 Rh6CG007700 Rh6DG008100
rosa_wichuraiana	Rw6G001030 Rw6G001140 Rw6G001210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	2 cut(s)	399, 562
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	685
AfaI	GTAC	2 cut(s)	322, 386
AgsI	TTSAA	6 cut(s)	97, 220, 254, 412, 434, 875
AhdI	GACNNNNNGTC	1 cut(s)	941
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	2 cut(s)	873, 905
AluBI	AGCT	5 cut(s)	506, 527, 916, 932, 956
AluI	AGCT	5 cut(s)	506, 527, 916, 932, 956
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	2 cut(s)	399, 562
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	5 cut(s)	337, 587, 929, 956, 959
ApoI	RAATTY	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	6, 313
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	900
AsuHPI	GGTGA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	731
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	2 cut(s)	185, 524
BbvI	GCAGC	5 cut(s)	324, 574, 941, 943, 946
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	31, 256
BciT130I	CCWGG	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	4 cut(s)	563, 591, 612, 926
BfoI	RGCGCY	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	825, 900
Bme18I	GGWCC	1 cut(s)	443
BmeRI	GACNNNNNGTC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	825, 900
BmsI	GCATC	2 cut(s)	807, 976
BmtI	GCTAGC	1 cut(s)	594
BpiI	GAAGAC	2 cut(s)	185, 524
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	128, 191
BpuMI	CCSGG	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	1002
BsaBI	GATNNNNATC	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	489, 556
Bse8I	GATNNNNATC	1 cut(s)	772
BseBI	CCWGG	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	1002
BseGI	GGATG	2 cut(s)	822, 991
BseJI	GATNNNNATC	1 cut(s)	772
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	489, 556
BseRI	GAGGAG	6 cut(s)	55, 58, 61, 64, 127, 707
BseXI	GCAGC	5 cut(s)	324, 574, 941, 943, 946
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	1002
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	391, 554
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	1002
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	399, 562
BspQI	GCTCTTC	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	489, 556
BssMI	GATC	2 cut(s)	391, 554
BssSI	CACGAG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	4 cut(s)	325, 547, 583, 939
Bst6I	CTCTTC	3 cut(s)	17, 98, 221
BstAPI	GCANNNNNTGC	3 cut(s)	476, 956, 986
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	592, 864
BstDEI	CTNAG	2 cut(s)	23, 572
BstF5I	GGATG	2 cut(s)	822, 991
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	6, 313
BstKTI	GATC	2 cut(s)	394, 557
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	2 cut(s)	391, 554
BstMWI	GCNNNNNNNGC	8 cut(s)	270, 273, 455, 476, 503, 596, 956, 986
BstNI	CCWGG	1 cut(s)	825
BstSCI	CCNGG	2 cut(s)	823, 898
BstV1I	GCAGC	5 cut(s)	324, 574, 941, 943, 946
BstV2I	GAAGAC	2 cut(s)	185, 524
BstXI	CCANNNNNNTGG	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	1002
BsuRI	GGCC	1 cut(s)	28
BsuTUI	ATCGAT	1 cut(s)	1002
BtsCI	GGATG	2 cut(s)	822, 991
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	592, 864
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	2 cut(s)	6, 313
Cfr13I	GGNCC	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	1002
Csp6I	GTAC	2 cut(s)	321, 385
CviAII	CATG	3 cut(s)	132, 520, 831
CviQI	GTAC	2 cut(s)	321, 385
DdeI	CTNAG	2 cut(s)	23, 572
DpnI	GATC	2 cut(s)	393, 556
DpnII	GATC	2 cut(s)	391, 554
DriI	GACNNNNNGTC	1 cut(s)	941
Eam1104I	CTCTTC	3 cut(s)	17, 98, 221
Eam1105I	GACNNNNNGTC	1 cut(s)	941
EarI	CTCTTC	3 cut(s)	17, 98, 221
EciI	GGCGGA	2 cut(s)	33, 183
Eco24I	GRGCYC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	1000
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	731
FaeI	CATG	3 cut(s)	135, 523, 834
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	3 cut(s)	131, 519, 830
FauI	CCCGC	2 cut(s)	325, 442
FauNDI	CATATG	1 cut(s)	793
FokI	GGATG	2 cut(s)	829, 998
FriOI	GRGCYC	1 cut(s)	731
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	4 cut(s)	563, 591, 612, 926
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 312
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	900
HhaI	GCGC	2 cut(s)	6, 313
Hin1II	CATG	3 cut(s)	135, 523, 834
Hin6I	GCGC	2 cut(s)	4, 311
HinP1I	GCGC	2 cut(s)	4, 311
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HinfI	GANTC	4 cut(s)	412, 424, 499, 881
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	4 cut(s)	385, 420, 629, 921
Hpy188I	TCNGA	4 cut(s)	24, 606, 704, 886
Hpy188III	TCNNGA	4 cut(s)	175, 409, 626, 875
Hpy8I	GTNNAC	4 cut(s)	385, 420, 629, 921
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	70, 93, 415, 428
HpyCH4III	ACNGT	4 cut(s)	325, 547, 583, 939
HpyCH4V	TGCA	3 cut(s)	479, 671, 854
HpyF10VI	GCNNNNNNNGC	8 cut(s)	270, 273, 455, 476, 503, 596, 956, 986
HpyF3I	CTNAG	2 cut(s)	23, 572
Hsp92II	CATG	3 cut(s)	135, 523, 834
HspAI	GCGC	2 cut(s)	4, 311
Kzo9I	GATC	2 cut(s)	391, 554
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	140, 196
Lsp1109I	GCAGC	5 cut(s)	324, 574, 941, 943, 946
LweI	GCATC	2 cut(s)	807, 976
MaeI	CTAG	4 cut(s)	563, 591, 612, 926
MaeIII	GTNAC	5 cut(s)	233, 547, 709, 943, 967
MalI	GATC	2 cut(s)	393, 556
MboI	GATC	2 cut(s)	391, 554
MboII	GAAGA	5 cut(s)	4, 85, 190, 208, 524
MfeI	CAATTG	1 cut(s)	672
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	4 cut(s)	489, 558, 672, 870
MlyI	GAGTC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	315, 399, 639
MspA1I	CMGCKG	5 cut(s)	449, 506, 527, 916, 932
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	2 cut(s)	825, 900
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	8 cut(s)	270, 273, 455, 476, 503, 596, 956, 986
NciI	CCSGG	1 cut(s)	900
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	2 cut(s)	391, 554
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	135, 523, 834
NmuCI	GTSAC	2 cut(s)	233, 943
NsbI	TGCGCA	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	412, 499, 881
PflFI	GACNNNGTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	823
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	823
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	520
PvuII	CAGCTG	4 cut(s)	506, 527, 916, 932
RsaI	GTAC	2 cut(s)	322, 386
RsaNI	GTAC	2 cut(s)	321, 385
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	315, 399, 639
Sau3AI	GATC	2 cut(s)	391, 554
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	825, 900
SduI	GDGCHC	1 cut(s)	731
SetI	ASST	7 cut(s)	322, 399, 508, 529, 918, 934, 958
SfaNI	GCATC	2 cut(s)	807, 976
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	143, 206
SmoI	CTYRAG	2 cut(s)	143, 206
Sse9I	AATT	4 cut(s)	489, 558, 672, 870
SspMI	CTAG	4 cut(s)	563, 591, 612, 926
StyD4I	CCNGG	2 cut(s)	823, 898
TaaI	ACNGT	4 cut(s)	325, 547, 583, 939
TaqI	TCGA	1 cut(s)	1002
TasI	AATT	4 cut(s)	489, 558, 672, 870
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	8 cut(s)	171, 199, 246, 267, 270, 273, 276, 374
TfiI	GAWTC	3 cut(s)	412, 499, 881
Tru1I	TTAA	3 cut(s)	315, 399, 639
Tru9I	TTAA	3 cut(s)	315, 399, 639
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	233, 943
TseI	GCWGC	5 cut(s)	337, 587, 929, 956, 959
Tsp45I	GTSAC	2 cut(s)	233, 943
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	4 cut(s)	563, 591, 612, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.