Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012175

Physical Location & Seq

Genomic Coordinates Reverse (-)

16355929 .. 16356410

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G150000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCGAAGAGAAACAGTATTGGCTTCTGAAGACAGAGCCAGGAGAGTGGTCGTGGGAGAACCAAGCAGCCAATGGAGGCGTAACCAAGTGGGATGGCGTCAAAAACAAGCAAGCCCAGAAGCACCTCAAGTCCATGAAACTCGGTGACCTCTGCTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGTGTAGTCGGCGTTGTGACTGTTGTTCGGGAATGGTATTCGGACAGCGGCGATGATGGGACGGTGGCTGTGAAGGCAGTTGGGGAGATGAGGAGGCCAGTGGACTTAAAGGAGATGAAGGGGGAGAAGGGGCTCAAGGGTTTTGCTCTGTTTAAGCAGCCGAGGCTGTCGGTTGTGCCGGTTCCTGAGGATGTGTGGATTAGGGTTTGTGATTTGGGAGACCATGATAGTGATGGTGAATCTGGTGAGGAAGAAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EVE

Protein Analysis

150

Amino Acids

16.74

Weight (kDa)

5.31

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14660
fragaria_vesca	FvH4_2g03350 FvH4_2g03390
malus_domestica	MD05G1105400.v1.1 MD10G1109900.v1.1
prunus_persica	Prupe.8G150000_v2.0.a1
pyrus_communis	pycom05g10240
rosa_chinensis	RchiOBHm_Chr6g0248511
rosa_laevigata	RLG00000015146 RLG00000015150
rosa_multiflora	Rmu_co8072848.1_g000001 Rmu_sc0002553.1_g000018
rosa_roxburghii	Rroxscaffold_7G00213250
rosa_rugosa	Rorug05G0531700
rosa_samantha	Rh6AG047600 Rh6AG048700 Rh6BG043900 Rh6BG044700 Rh6CG040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	2 cut(s)	184, 234
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	2 cut(s)	99, 174
AjnI	CCWGG	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	2 cut(s)	180, 281
ApeKI	GCWGC	2 cut(s)	68, 343
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	158, 434, 443
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	80, 355
BccI	CCATC	3 cut(s)	89, 236, 413
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	3 cut(s)	69, 235, 344
BlsI	GCNGC	3 cut(s)	70, 236, 345
Bme1390I	CCNGG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	175, 369
BmrFI	CCNGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	113, 305
BsaHI	GRCGYC	2 cut(s)	99, 174
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	177, 347
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	177, 347
BseGI	GGATG	2 cut(s)	100, 382
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	80, 355
BshFI	GGCC	2 cut(s)	182, 283
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	171, 365
BslFI	GGGAC	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	182, 283
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	184, 234
BspANI	GGCC	2 cut(s)	182, 283
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	175, 369
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	177, 347
BssNI	GRCGYC	2 cut(s)	99, 174
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	18, 208, 250
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	2 cut(s)	99, 174
BstC8I	GCNNGC	2 cut(s)	114, 184
BstDEI	CTNAG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	100, 382
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 349
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	80, 355
BstV2I	GAAGAC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	182, 283
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	100, 382
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	114, 184
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	88
CviAII	CATG	2 cut(s)	136, 410
DdeI	CTNAG	1 cut(s)	372
DinI	GGCGCC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	139, 413
FaiI	YATR	2 cut(s)	137, 411
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	135, 409
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	69, 235, 344
FokI	GGATG	2 cut(s)	107, 389
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	69, 235, 344
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	69, 235, 344
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	182, 283
HapII	CCGG	2 cut(s)	171, 365
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	99, 174
Hin1II	CATG	2 cut(s)	139, 413
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	2 cut(s)	171, 365
HphI	GGTGA	3 cut(s)	158, 434, 443
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	30, 229
Hpy188III	TCNNGA	2 cut(s)	215, 371
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	253, 298, 307
HpyCH4III	ACNGT	3 cut(s)	18, 208, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 349
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	2 cut(s)	99, 174
Hsp92II	CATG	2 cut(s)	139, 413
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
LpnPI	CCDG	8 cut(s)	27, 54, 131, 184, 297, 378, 384, 414
Lsp1109I	GCAGC	2 cut(s)	80, 355
MaeIII	GTNAC	3 cut(s)	82, 146, 202
MboII	GAAGA	4 cut(s)	20, 43, 151, 449
MhlI	GDGCHC	1 cut(s)	321
Mly113I	GGCGCC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	71, 137, 161, 270, 273, 342, 367, 427
MseI	TTAA	2 cut(s)	293, 339
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	171, 365
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	260, 349
NarI	GGCGCC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	139, 413
NlaIV	GGNNCC	2 cut(s)	175, 369
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	146, 202
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	70, 236, 345
PluTI	GGCGCC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	175, 369
PspPI	GGNCC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	293, 339
SatI	GCNGC	3 cut(s)	69, 235, 344
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	2 cut(s)	129, 153
SfoI	GGCGCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	128, 320
SmoI	CTYRAG	2 cut(s)	128, 320
SsiI	CCGC	2 cut(s)	184, 234
SspDI	GGCGCC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	18, 208, 250
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	293, 339
Tru9I	TTAA	2 cut(s)	293, 339
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	146, 202
TseI	GCWGC	2 cut(s)	68, 343
Tsp45I	GTSAC	2 cut(s)	146, 202
TspDTI	ATGAA	2 cut(s)	152, 317
TspRI	CASTG	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	2 cut(s)	71, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.