Rh6CG040600

Thymocyte nuclear protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012175
Physical Location & Seq
Forward (+)
3943251 .. 3943727
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG040600.1

Sequence Viewer

Length: 477 bp
ATGGGCAAAGAGAAGCAGTATTGGCTTCTGAAAACAGAGCCAGGAGAGTGGTCATGGGAGGACCAAGCAGCCAATAACGGCATAACCAAGTGGGATGGAGTCAAGAACAAGCAGGCCCAGAAGTACCTCAAGTCCATGAACCTCGATGACCTCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGCATAGTCGGCGTTGTGACAGTCGTGCGTGAATGGTATTCGGAAGGTGAAGGTGGAGATGGTGCGGTTGATGTGAAGGCAATCGGGGAGATGAGGAGGCCGATTGACTTGAAGGAGATGAAGGGGGAGGAGGGTCTCAAGGGTTTTGCTCTGTTTCGGCAGCCGAGGCTGTCGGTTGTGCCGGTTTCGGAGGATGTGTGGTTGAAAGTTTGTGATTTGGGAGGTGGGTTTGAAGGTGACGGTGTTGTTGTGGAAGATGATGAATCTGGTGATGAAGGAGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EVE

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

4.64

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EVE PF01878 6 - 134 5.6e-37 EVE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 184, 187, 251
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 298, 391, 419
AjnI CCWGG 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 326
AoxI GGCC 4 cut(s) 114, 174, 180, 284
ApeKI GCWGC 2 cut(s) 68, 346
AspS9I GGNCC 4 cut(s) 61, 115, 174, 181
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 3 cut(s) 245, 434, 467
AvaII GGWCC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 80, 358
BccI CCATC 2 cut(s) 89, 239
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 326
BisI GCNGC 3 cut(s) 69, 187, 347
BlsI GCNGC 3 cut(s) 70, 188, 348
Bme1390I CCNGG 2 cut(s) 42, 172
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 61, 115, 174, 181
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 42, 172
BpuEI CTTGAG 2 cut(s) 113, 308
BpuMI CCSGG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 171, 177, 350
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 367
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 171, 177, 350
BseGI GGATG 2 cut(s) 100, 385
BseLI CCNNNNNNNGG 1 cut(s) 172
BseRI GAGGAG 2 cut(s) 295, 329
BseXI GCAGC 2 cut(s) 80, 358
BshFI GGCC 4 cut(s) 116, 176, 182, 286
BsiSI CCGG 2 cut(s) 171, 368
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 4 cut(s) 116, 176, 182, 286
Bso31I GGTCTC 1 cut(s) 326
BspACI CCGC 3 cut(s) 184, 187, 251
BspANI GGCC 4 cut(s) 116, 176, 182, 286
BspLI GGNNCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 171, 177, 350
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 208, 428
BstC8I GCNNGC 2 cut(s) 114, 184
BstF5I GGATG 2 cut(s) 100, 385
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 3 cut(s) 22, 195, 352
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 2 cut(s) 40, 170
BstV1I GCAGC 2 cut(s) 80, 358
BstXI CCANNNNNNTGG 1 cut(s) 48
BsuRI GGCC 4 cut(s) 116, 176, 182, 286
BtsCI GGATG 2 cut(s) 100, 385
Cac8I GCNNGC 2 cut(s) 114, 184
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 61, 115, 174, 181
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 54, 136
CviJI RGCY 9 cut(s) 25, 40, 71, 116, 176, 182, 286, 349, 355
CviKI_1 RGCY 9 cut(s) 25, 40, 71, 116, 176, 182, 286, 349, 355
CviQI GTAC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 57, 139
FaiI YATR 4 cut(s) 55, 83, 137, 191
FatI CATG 2 cut(s) 53, 135
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 69, 187, 347
FokI GGATG 2 cut(s) 107, 392
Fsp4HI GCNGC 3 cut(s) 69, 187, 347
GluI GCNGC 3 cut(s) 69, 187, 347
HaeIII GGCC 4 cut(s) 116, 176, 182, 286
HapII CCGG 2 cut(s) 171, 368
Hin1II CATG 2 cut(s) 57, 139
HinfI GANTC 2 cut(s) 99, 449
HpaII CCGG 2 cut(s) 171, 368
HphI GGTGA 3 cut(s) 245, 434, 467
Hpy188I TCNGA 3 cut(s) 30, 229, 376
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 7 cut(s) 224, 230, 256, 292, 301, 413, 455
HpyCH4III ACNGT 2 cut(s) 208, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 195, 352
Hsp92II CATG 2 cut(s) 57, 139
LpnPI CCDG 7 cut(s) 27, 54, 98, 131, 184, 381, 438
Lsp1109I GCAGC 2 cut(s) 80, 358
MaeIII GTNAC 2 cut(s) 202, 422
MboII GAAGA 2 cut(s) 151, 452
MlyI GAGTC 1 cut(s) 108
MspI CCGG 2 cut(s) 171, 368
MspR9I CCNGG 2 cut(s) 42, 172
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 22, 195, 352
NciI CCSGG 1 cut(s) 172
NlaIII CATG 2 cut(s) 57, 139
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 2 cut(s) 202, 422
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 3 cut(s) 70, 188, 348
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 4 cut(s) 61, 115, 174, 181
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 3 cut(s) 69, 187, 347
Sau96I GGNCC 4 cut(s) 61, 115, 174, 181
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 42, 172
SetI ASST 7 cut(s) 129, 144, 153, 235, 241, 412, 424
SinI GGWCC 1 cut(s) 61
SmlI CTYRAG 2 cut(s) 128, 323
SmoI CTYRAG 2 cut(s) 128, 323
SsiI CCGC 3 cut(s) 184, 187, 251
StyD4I CCNGG 2 cut(s) 40, 170
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 208, 428
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 449
TseFI GTSAC 2 cut(s) 202, 422
TseI GCWGC 2 cut(s) 68, 346
Tsp45I GTSAC 2 cut(s) 202, 422
TspDTI ATGAA 4 cut(s) 152, 320, 462, 474
VpaK11BI GGWCC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.