Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0012175

Physical Location & Seq

Genomic Coordinates Forward (+)

102130 .. 102606

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggcaaagagaagcagtattggcttctgaaaacagagccaggagagtggtcgtgggaggaccaagcagccaatgagggcatcaccaagtgggatggagtcaagaacaagcaggcccagaagtacctcaagtccatgaacctcgacgacctctgcttcttctaccactccggcgccaaggcccgccgcgtagtcggcgtcgtgacggtcgtgcgtgaatggtattcggaaggtgaaggtggtgacggtgcggttgatgtgaaggcagttggggagatgaggaggccggttgacttgaaggagatgaagggggaggagggtctcaagggttttgctctgtttcggcagccgaggctgtcggttgtgccggtttcggaggatgtgtggttgaaagtttgtgatttgggaggtgggtttgaaggtgatggtgttgatgtggaagatgatgaatctgctgatgaaggagacgatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EVE

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

4.55

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14660
fragaria_vesca	FvH4_2g03350 FvH4_2g03390
malus_domestica	MD05G1105400.v1.1 MD10G1109900.v1.1
prunus_persica	Prupe.8G150000_v2.0.a1
pyrus_communis	pycom05g10240
rosa_chinensis	RchiOBHm_Chr6g0248511
rosa_laevigata	RLG00000015146 RLG00000015150
rosa_multiflora	Rmu_co8072848.1_g000001 Rmu_sc0002553.1_g000018
rosa_roxburghii	Rroxscaffold_7G00213250
rosa_rugosa	Rorug05G0531700
rosa_samantha	Rh6AG047600 Rh6AG048700 Rh6BG043900 Rh6BG044700 Rh6CG040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	184, 187, 251
AcyI	GRCGYC	2 cut(s)	174, 198
AdeI	CACNNNGTG	1 cut(s)	90
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	298, 391, 419
AjnI	CCWGG	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	326, 459
AoxI	GGCC	3 cut(s)	114, 180, 284
ApeKI	GCWGC	2 cut(s)	68, 346
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	61, 115, 181
AsuHPI	GGTGA	4 cut(s)	76, 245, 254, 434
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	80, 358
BccI	CCATC	2 cut(s)	89, 419
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	2 cut(s)	326, 459
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	3 cut(s)	69, 187, 347
BlsI	GCNGC	3 cut(s)	70, 188, 348
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	61, 115, 181
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	113, 308
BsaHI	GRCGYC	2 cut(s)	174, 198
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	177, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bse118I	RCCGGY	2 cut(s)	286, 367
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	177, 350
BseGI	GGATG	2 cut(s)	100, 385
BseRI	GAGGAG	2 cut(s)	295, 329
BseXI	GCAGC	2 cut(s)	80, 358
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	116, 182, 286
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	171, 287, 368
BsmAI	GTCTC	2 cut(s)	326, 459
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	116, 182, 286
Bso31I	GGTCTC	1 cut(s)	326
BspACI	CCGC	3 cut(s)	184, 187, 251
BspANI	GGCC	3 cut(s)	116, 182, 286
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	286, 367
BssAI	RCCGGY	2 cut(s)	286, 367
BssECI	CCNNGG	2 cut(s)	177, 350
BssNI	GRCGYC	2 cut(s)	174, 198
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	208, 248
BstACI	GRCGYC	2 cut(s)	174, 198
BstC8I	GCNNGC	2 cut(s)	114, 184
BstF5I	GGATG	2 cut(s)	100, 385
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstMAI	GTCTC	2 cut(s)	326, 459
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 195, 352
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	80, 358
BstXI	CCANNNNNNTGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	116, 182, 286
BtsCI	GGATG	2 cut(s)	100, 385
Cac8I	GCNNGC	2 cut(s)	114, 184
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	286, 367
Cfr13I	GGNCC	3 cut(s)	61, 115, 181
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	8 cut(s)	25, 40, 71, 116, 182, 286, 349, 355
CviKI_1	RGCY	8 cut(s)	25, 40, 71, 116, 182, 286, 349, 355
CviQI	GTAC	1 cut(s)	124
DinI	GGCGCC	1 cut(s)	175
DraIII	CACNNNGTG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	1 cut(s)	139
FaiI	YATR	1 cut(s)	137
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	69, 187, 347
FokI	GGATG	2 cut(s)	107, 392
Fsp4HI	GCNGC	3 cut(s)	69, 187, 347
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	69, 187, 347
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	116, 182, 286
HapII	CCGG	3 cut(s)	171, 287, 368
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	2 cut(s)	174, 198
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	99, 449
HpaII	CCGG	3 cut(s)	171, 287, 368
HphI	GGTGA	4 cut(s)	76, 245, 254, 434
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	30, 229, 376
Hpy188III	TCNNGA	2 cut(s)	103, 202
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	2 cut(s)	149, 203
HpyAV	CCTTC	7 cut(s)	224, 230, 256, 292, 301, 413, 455
HpyCH4III	ACNGT	2 cut(s)	208, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 195, 352
Hsp92I	GRCGYC	2 cut(s)	174, 198
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	174
KasI	GGCGCC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	27, 54, 98, 131, 184, 300, 381
Lsp1109I	GCAGC	2 cut(s)	80, 358
LweI	GCATC	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	202, 242
MboII	GAAGA	2 cut(s)	151, 452
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	108
MspI	CCGG	3 cut(s)	171, 287, 368
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	22, 195, 352
NarI	GGCGCC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	175
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	2 cut(s)	202, 242
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	70, 188, 348
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	3 cut(s)	61, 115, 181
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SatI	GCNGC	3 cut(s)	69, 187, 347
Sau96I	GGNCC	3 cut(s)	61, 115, 181
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	7 cut(s)	129, 144, 153, 235, 241, 412, 424
SfaNI	GCATC	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	128, 323
SmoI	CTYRAG	2 cut(s)	128, 323
SsiI	CCGC	3 cut(s)	184, 187, 251
SspDI	GGCGCC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	208, 248
TaqI	TCGA	1 cut(s)	144
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	202, 242
TseI	GCWGC	2 cut(s)	68, 346
Tsp45I	GTSAC	2 cut(s)	202, 242
TspDTI	ATGAA	4 cut(s)	152, 320, 462, 474
VpaK11BI	GGWCC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.