Prupe.8G189900_v2.0.a1

sodium metabolite cotransporter BASS3

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
18523412 .. 18526358
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G189900.1

Sequence Viewer

Length: 1293 bp
ATGTCCACCACTTCCATCTGCTACTCAATGACCTCAATACCCTTCCTTTCTCTCACACCTCACACCACAACCTCAAAGCTCTTCACAAAACGAAATTCTTACACACCGAGGTCTTCCTTTTCTTCTTCATCTTCTTCCCGTTCGTTTCCCAAAAGGGTATTGAAAAATGGGGTTTGTCTGTCGATAAAAGCTTGCTCTACGTCGCCTTTTATAGGGAGAGTCGGGTCACAGCGGAGAGAAGGCAACTCTTCGTTGCTGTCTTTTGGAACAAACCCATCAGCTGCAATTTCCAAAGAGGGTGCGCAGAGTAGCGGTGACTCGTCTCAGCTCTTGTCAGCAATGCTTCCTTTTGTTGTTGCTGCTACTGCTGTTGCTGCTCTGGCTCAGCCTTCAACGTTCACTTGGGTATCTAAGGATTTATATGCCCCTGCTCTTGGTGGGATCATGCTCTCTATTGGAATCAAACTTTCCATTGATGATTTTGCTCTTGCATTCAAAAGACCTTTACCGCTCTCTATTGGGTTTATGGCACAGTATATGTTGAAACCGGTTCTCGGGGTACTGATTGCAAAGGCATTTGGCGTGTCTAGGATTTTCTACGCTGGCTTTGTCCTCACCACTTGTGTTGCAGGGGCTCAGCTATCTAGCTATGCTAGTTTTTTGAGCAAAGGAGATGTGGCCTTGAGCATTCTCCTCACCAGCACCACCACCATTGCCTCAGTGATTGTTACGCCTCTACTAAGTGGCCTTTTAATTGGTTCTGTTGTTCCAGTCGATGCTGTTGCCATGTCAAAGTCAATATTGCAGGTGGTTCTTGTTCCAGTAACCATTGGCCTTGTGCTCAATACTTATGCAAAACCAGTTGTCAATTTCCTTGGACCAGTGATGCCAGTCGTTGCTATGATTTGCACTTCATTGTGCATTGGCAGTCCTCTTGCAATTAATCGGAGCCAAATTCTGTCTGCAGAGGGGTTCCGATTGATTTTTCCAGTTATAGCATTTCACGCAGTGGCCTTCACGGTTGGATACTGGGTATCCAAAATTCCAAGTTTGAGGCAAGAAGAAGAAGTTAGCAGGACACTTTCCTTGTGCACAGGAATGCAAAGCTCCACCCTGGCAGGTCTCCTGGCAAGCCAGTTCCTTGGGAGCAGCCAGGCGGTTCCTCCAGCATGTTCGGTTGTTGCCATGGCGATCGTGGGCCTTTTTCTTGCCTCTTTCTGGGGCACCGGCTCTCAAATCAGAGACCTGCCTTCCCTATTGATGCCTCAAACTGGTTCTACAATGAAGGCTTAG

Protein Analysis

431

Amino Acids

45.04

Weight (kDa)

9.78

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 796
Acc16I TGCGCA 1 cut(s) 303
Acc36I ACCTGC 3 cut(s) 796, 1109, 1254
AccB1I GGYRCC 1 cut(s) 1223
AccBSI CCGCTC 1 cut(s) 511
AciI CCGC 4 cut(s) 232, 312, 509, 1157
AclI AACGTT 1 cut(s) 395
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 3 cut(s) 94, 954, 1041
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 5 cut(s) 212, 434, 554, 1218, 1271
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 4 cut(s) 163, 393, 496, 544
AjnI CCWGG 3 cut(s) 1113, 1125, 1152
AluBI AGCT 7 cut(s) 79, 191, 281, 328, 640, 648, 1107
AluI AGCT 7 cut(s) 79, 191, 281, 328, 640, 648, 1107
Alw21I GWGCWC 2 cut(s) 843, 1094
Alw26I GTCTC 3 cut(s) 327, 1127, 1236
Alw44I GTGCAC 1 cut(s) 1090
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 5 cut(s) 678, 745, 832, 1011, 1198
ApaLI GTGCAC 1 cut(s) 1090
ApeKI GCWGC 4 cut(s) 281, 359, 374, 1149
ApoI RAATTY 3 cut(s) 94, 954, 1041
AseI ATTAAT 1 cut(s) 942
AsiGI ACCGGT 1 cut(s) 547
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 878, 1198
AsuHPI GGTGA 3 cut(s) 326, 607, 688
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 1 cut(s) 878
BaeGI GKGCMC 2 cut(s) 1094, 1226
BaeI ACNNNNGTAYC 2 cut(s) 390, 423
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 843, 1094
BbvI GCAGC 4 cut(s) 268, 346, 361, 1161
BccI CCATC 2 cut(s) 23, 283
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 3 cut(s) 1115, 1127, 1154
BciVI GTATCC 2 cut(s) 1019, 1045
BcoDI GTCTC 3 cut(s) 327, 1127, 1236
BfaI CTAG 3 cut(s) 588, 645, 654
BfmI CTRYAG 1 cut(s) 963
BfuAI ACCTGC 3 cut(s) 796, 1109, 1254
BfuI GTATCC 2 cut(s) 1019, 1045
BisI GCNGC 4 cut(s) 282, 360, 375, 1150
BlpI GCTNAGC 2 cut(s) 384, 636
BlsI GCNGC 4 cut(s) 283, 361, 376, 1151
Bme1390I CCNGG 3 cut(s) 1115, 1127, 1154
Bme18I GGWCC 1 cut(s) 878
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 878, 1198
BmiI GGNNCC 4 cut(s) 950, 974, 1161, 1225
BmrFI CCNGG 3 cut(s) 1115, 1127, 1154
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 3 cut(s) 766, 876, 1251
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 1149
Bpu1102I GCTNAGC 2 cut(s) 384, 636
BpuEI CTTGAG 1 cut(s) 703
BsaI GGTCTC 2 cut(s) 1127, 1236
BsaJI CCNNGG 5 cut(s) 107, 874, 1113, 1141, 1185
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 434, 554, 1218, 1271
Bse118I RCCGGY 2 cut(s) 547, 1226
Bse1I ACTGG 9 cut(s) 770, 821, 860, 881, 890, 989, 1034, 1135, 1276
Bse3DI GCAATG 2 cut(s) 345, 711
BseBI CCWGG 3 cut(s) 1115, 1127, 1154
BseDI CCNNGG 5 cut(s) 107, 874, 1113, 1141, 1185
BseLI CCNNNNNNNGG 5 cut(s) 212, 434, 554, 1218, 1271
BseMI GCAATG 2 cut(s) 345, 711
BseMII CTCAG 4 cut(s) 338, 398, 650, 732
BseNI ACTGG 9 cut(s) 770, 821, 860, 881, 890, 989, 1034, 1135, 1276
BseRI GAGGAG 1 cut(s) 683
BseSI GKGCMC 2 cut(s) 1094, 1226
BseXI GCAGC 4 cut(s) 268, 346, 361, 1161
Bsh1285I CGRYCG 1 cut(s) 1194
BshFI GGCC 5 cut(s) 680, 747, 834, 1013, 1200
BshNI GGYRCC 1 cut(s) 1223
BshTI ACCGGT 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 1194
BsiHKAI GWGCWC 2 cut(s) 843, 1094
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 2 cut(s) 548, 1227
BslI CCNNNNNNNGG 5 cut(s) 212, 434, 554, 1218, 1271
BsmAI GTCTC 3 cut(s) 327, 1127, 1236
BsmBI CGTCTC 1 cut(s) 327
BsmI GAATGC 3 cut(s) 491, 687, 1104
BsnI GGCC 5 cut(s) 680, 747, 834, 1013, 1200
Bso31I GGTCTC 2 cut(s) 1127, 1236
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 4 cut(s) 637, 843, 1094, 1226
Bsp143I GATC 2 cut(s) 441, 1191
Bsp1720I GCTNAGC 2 cut(s) 384, 636
Bsp19I CCATGG 1 cut(s) 1185
BspACI CCGC 4 cut(s) 232, 312, 509, 1157
BspANI GGCC 5 cut(s) 680, 747, 834, 1013, 1200
BspCNI CTCAG 4 cut(s) 337, 397, 649, 731
BspLI GGNNCC 4 cut(s) 950, 974, 1161, 1225
BspMAI CTGCAG 1 cut(s) 967
BspMI ACCTGC 3 cut(s) 796, 1109, 1254
BspPI GGATC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 1223
BspTNI GGTCTC 2 cut(s) 1127, 1236
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 345, 711
BsrFI RCCGGY 2 cut(s) 547, 1226
BsrI ACTGG 9 cut(s) 770, 821, 860, 881, 890, 989, 1034, 1135, 1276
BssAI RCCGGY 2 cut(s) 547, 1226
BssECI CCNNGG 5 cut(s) 107, 874, 1113, 1141, 1185
BssMI GATC 2 cut(s) 441, 1191
BssT1I CCWWGG 3 cut(s) 874, 1141, 1185
Bst2UI CCWGG 3 cut(s) 1115, 1127, 1154
Bst4CI ACNGT 2 cut(s) 534, 1021
Bst6I CTCTTC 2 cut(s) 86, 253
BstC8I GCNNGC 3 cut(s) 193, 604, 1132
BstDEI CTNAG 7 cut(s) 324, 384, 411, 636, 718, 740, 1290
BstDSI CCRYGG 1 cut(s) 1185
BstENI CCTNNNNNAGG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 444, 1194
BstMAI GTCTC 3 cut(s) 327, 1127, 1236
BstMBI GATC 2 cut(s) 441, 1191
BstMCI CGRYCG 1 cut(s) 1194
BstMWI GCNNNNNNNGC 4 cut(s) 365, 374, 380, 1004
BstNI CCWGG 3 cut(s) 1115, 1127, 1154
BstNSI RCATGY 1 cut(s) 1173
BstSCI CCNGG 3 cut(s) 1113, 1125, 1152
BstSFI CTRYAG 1 cut(s) 963
BstSLI GKGCMC 2 cut(s) 1094, 1226
BstV1I GCAGC 4 cut(s) 268, 346, 361, 1161
BstV2I GAAGAC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 1142
BsuI GTATCC 2 cut(s) 1019, 1045
BsuRI GGCC 5 cut(s) 680, 747, 834, 1013, 1200
BtgI CCRYGG 1 cut(s) 1185
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 3 cut(s) 726, 888, 1014
BveI ACCTGC 3 cut(s) 796, 1109, 1254
Cac8I GCNNGC 3 cut(s) 193, 604, 1132
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 2 cut(s) 547, 1226
Cfr13I GGNCC 2 cut(s) 878, 1198
Csp6I GTAC 1 cut(s) 560
CspAI ACCGGT 1 cut(s) 547
CspCI CAANNNNNGTGG 4 cut(s) 607, 642, 694, 729
CviAII CATG 4 cut(s) 445, 787, 1170, 1186
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 7 cut(s) 324, 384, 411, 636, 718, 740, 1290
DpnI GATC 2 cut(s) 443, 1193
DpnII GATC 2 cut(s) 441, 1191
DraIII CACNNNGTG 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 86, 253
EarI CTCTTC 2 cut(s) 86, 253
Eco130I CCWWGG 3 cut(s) 874, 1141, 1185
Eco24I GRGCYC 1 cut(s) 637
Eco31I GGTCTC 2 cut(s) 1127, 1236
Eco47I GGWCC 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 1113, 1125, 1152
EcoT14I CCWWGG 3 cut(s) 874, 1141, 1185
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 3 cut(s) 874, 1141, 1185
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 4 cut(s) 448, 790, 1173, 1189
FatI CATG 4 cut(s) 444, 786, 1169, 1185
Fnu4HI GCNGC 4 cut(s) 282, 360, 375, 1150
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 4 cut(s) 282, 360, 375, 1150
FspBI CTAG 3 cut(s) 588, 645, 654
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
GluI GCNGC 4 cut(s) 282, 360, 375, 1150
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 5 cut(s) 680, 747, 834, 1013, 1200
HapII CCGG 2 cut(s) 548, 1227
HhaI GCGC 1 cut(s) 304
Hin1II CATG 4 cut(s) 448, 790, 1173, 1189
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 219, 317, 459
HpaII CCGG 2 cut(s) 548, 1227
HphI GGTGA 3 cut(s) 326, 607, 688
Hpy166II GTNNAC 3 cut(s) 6, 399, 1092
Hpy188I TCNGA 3 cut(s) 948, 977, 1241
Hpy8I GTNNAC 3 cut(s) 6, 399, 1092
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 6 cut(s) 52, 233, 399, 1024, 1260, 1279
HpyCH4III ACNGT 2 cut(s) 534, 1021
HpyCH4IV ACGT 2 cut(s) 200, 395
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 374, 380, 1004
HpyF3I CTNAG 7 cut(s) 324, 384, 411, 636, 718, 740, 1290
HpySE526I ACGT 2 cut(s) 200, 395
Hsp92II CATG 4 cut(s) 448, 790, 1173, 1189
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 441, 1191
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 3 cut(s) 948, 1112, 1146
Lsp1109I GCAGC 4 cut(s) 268, 346, 361, 1161
LweI GCATC 3 cut(s) 766, 876, 1251
MaeI CTAG 3 cut(s) 588, 645, 654
MaeII ACGT 2 cut(s) 200, 395
MaeIII GTNAC 4 cut(s) 225, 314, 727, 823
MalI GATC 2 cut(s) 443, 1193
MbiI CCGCTC 1 cut(s) 511
MboI GATC 2 cut(s) 441, 1191
MboII GAAGA 9 cut(s) 73, 105, 114, 117, 123, 126, 240, 1073, 1076
MhlI GDGCHC 4 cut(s) 637, 843, 1094, 1226
MluCI AATT 7 cut(s) 94, 285, 753, 868, 939, 954, 1041
MlyI GAGTC 2 cut(s) 228, 311
MmeI TCCRAC 1 cut(s) 1003
MseI TTAA 2 cut(s) 752, 942
MslI CAYNNNNRTG 1 cut(s) 1097
MspA1I CMGCKG 2 cut(s) 232, 281
MspI CCGG 2 cut(s) 548, 1227
MspR9I CCNGG 3 cut(s) 1115, 1127, 1154
Mva1269I GAATGC 3 cut(s) 491, 687, 1104
MvaI CCWGG 3 cut(s) 1115, 1127, 1154
MwoI GCNNNNNNNGC 4 cut(s) 365, 374, 380, 1004
NcoI CCATGG 1 cut(s) 1185
NdeII GATC 2 cut(s) 441, 1191
NlaIII CATG 4 cut(s) 448, 790, 1173, 1189
NlaIV GGNNCC 4 cut(s) 950, 974, 1161, 1225
NmuCI GTSAC 2 cut(s) 225, 314
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 1 cut(s) 1173
PaqCI CACCTGC 1 cut(s) 796
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 3 cut(s) 491, 687, 1104
PfeI GAWTC 1 cut(s) 459
PinAI ACCGGT 1 cut(s) 547
PkrI GCNGC 4 cut(s) 283, 361, 376, 1151
Ple19I CGATCG 1 cut(s) 1194
PleI GAGTC 2 cut(s) 227, 311
PpsI GAGTC 2 cut(s) 227, 311
PshBI ATTAAT 1 cut(s) 942
Psp1406I AACGTT 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 1113, 1125, 1152
PspGI CCWGG 3 cut(s) 1113, 1125, 1152
PspN4I GGNNCC 4 cut(s) 950, 974, 1161, 1225
PspPI GGNCC 2 cut(s) 878, 1198
PstI CTGCAG 1 cut(s) 967
PvuI CGATCG 1 cut(s) 1194
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 1097
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 752, 942
SatI GCNGC 4 cut(s) 282, 360, 375, 1150
Sau3AI GATC 2 cut(s) 441, 1191
Sau96I GGNCC 2 cut(s) 878, 1198
SchI GAGTC 2 cut(s) 228, 311
ScrFI CCNGG 3 cut(s) 1115, 1127, 1154
SduI GDGCHC 4 cut(s) 637, 843, 1094, 1226
SfaNI GCATC 3 cut(s) 766, 876, 1251
SfcI CTRYAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 7 cut(s) 94, 285, 753, 868, 939, 954, 1041
SsiI CCGC 4 cut(s) 232, 312, 509, 1157
SspI AATATT 1 cut(s) 801
SspMI CTAG 3 cut(s) 588, 645, 654
StyD4I CCNGG 3 cut(s) 1113, 1125, 1152
StyI CCWWGG 3 cut(s) 874, 1141, 1185
TaaI ACNGT 2 cut(s) 534, 1021
TaiI ACGT 2 cut(s) 203, 398
TaqI TCGA 2 cut(s) 182, 774
TasI AATT 7 cut(s) 94, 285, 753, 868, 939, 954, 1041
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 752, 942
Tru9I TTAA 2 cut(s) 752, 942
TscAI CASTG 3 cut(s) 726, 888, 1014
TseFI GTSAC 2 cut(s) 225, 314
TseI GCWGC 4 cut(s) 281, 359, 374, 1149
Tsp45I GTSAC 2 cut(s) 225, 314
TspDTI ATGAA 2 cut(s) 117, 903
TspRI CASTG 3 cut(s) 726, 888, 1014
VneI GTGCAC 1 cut(s) 1090
VpaK11BI GGWCC 1 cut(s) 878
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 3 cut(s) 94, 954, 1041
XceI RCATGY 1 cut(s) 1173
XcmI CCANNNNNNNNNTGG 1 cut(s) 1192
XspI CTAG 3 cut(s) 588, 645, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.