Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008339

Physical Location & Seq

Genomic Coordinates Forward (+)

44625686 .. 44627938

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCCAAAGGAGCCGAACAGAGCGGTGAGGACTCGTCTCAGGTCTTATCCGCAATGCTTCCATTTGTGGTTGCTGCCACTGCTATTGCTGCTTTGGCTCAGCCTGCCACGTTTACTTGGGTATCCAAGGATTTATACGCCCCTGCTCTTGGTGGGATCATGCTCTCCATTGGAATCAAACTTTCGGTCGATGATTTTGCTCTTGCTGTCAAAATGTGCTCCCAATATTCTTTACTTCTCATCTCTTGCAGACCTTTACCACTCTCTGTTGGGTTTATCGCACAGTATGTGCTGAAACCGGCTCTAGGGGTGTTAATTGCAATGGCATTTGGCGTGCCTAGAATATTCTACGCTGGGTTTGTCCTCACCACTTGTGTTGCAGGGGCACAGCTATCTAGTTATGCTAGTTTCTTGAGCAAAGGAGATGTGGCCTTGAGTATCCTCCTCACTAGCTCCACCACAATTGCCTCGGTGATCGTTACCCCTCTACTGACAGGCCTTTTAATTGGTTCTGTTGTTCCGGTCGATGCTGTTGCCATGGCAAAGTCAATATTGCAGGTTGTTCTTGTTCCGGTCACTATTGGCCTTGCTCTGAATACTTATGCCAAACCAGTTGTCACCATCCTTCAACCAGTGATGCCATTTGTTGCTATGATCTGTACTTCATTGTGCATTGGCAGTCCTCTTGCAATTAATCAAAGACAAATTCTGTCTATGGATGGTCTCCGATTGATATTTCCTGTTTTAGCATTTCATGCAGTGGCCTTTACTGTTGGATACTGGGTATCCAAAATTCCAAGTGTAAGGCAAGAAGAAGAAGTTAGCAGAACACTTTCATTATGCACAGGAATGCAAAGCTCCACCCTGGCAGGTCTCCTTGCAAGCCAGTTCCTTGGGAGCAGTCAAGCCGTTCCTCCAGCATGTTCGGTTGTTGCCATGGCCATCATGGGCCTTTTTCTTGCCTCTTTCTGGGGCACGGGTGCTCGAATTCGAGACCTTTCTACCCTACTAATGCCTCAAACCAGTTCTACCATGAACGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

348

Amino Acids

36.31

Weight (kDa)

8.68

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	48 - 238	1.3e-28	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25410
fragaria_vesca	FvH4_2g17730 FvH4_2g17730 FvH4_2g17730 FvH4_2g17730
malus_domestica	MD05G1158500.v1.1 MD10G1151500.v1.1
prunus_persica	Prupe.8G189900_v2.0.a1
pyrus_communis	pycom05g15050 pycom10g13060
rosa_chinensis	RchiOBHm_Chr1g0359741 RchiOBHm_Chr6g0282771
rosa_laevigata	RLG00000012871
rosa_multiflora	Rmu_sc0009684.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186080
rosa_rugosa	Rorug06G0149100
rosa_samantha	Rh1AG286400 Rh1BG252400 Rh6AG262400 Rh6BG265400 Rh6CG264700 Rh6DG257200
rosa_wichuraiana	Rw6G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	547, 860
AccBSI	CCGCTC	1 cut(s)	24
AciI	CCGC	2 cut(s)	24, 51
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	3 cut(s)	705, 792, 987
AfaI	GTAC	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	149, 305, 969
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	864
AluBI	AGCT	3 cut(s)	391, 453, 858
AluI	AGCT	3 cut(s)	391, 453, 858
Alw21I	GWGCWC	2 cut(s)	221, 985
Alw26I	GTCTC	4 cut(s)	42, 728, 878, 987
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	6 cut(s)	429, 496, 583, 762, 939, 949
ApeKI	GCWGC	2 cut(s)	74, 89
ApoI	RAATTY	3 cut(s)	705, 792, 987
ArsI	GACNNNNNNTTYG	4 cut(s)	171, 203, 600, 632
AseI	ATTAAT	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	38, 358, 484, 610
BaeGI	GKGCMC	2 cut(s)	388, 977
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BalI	TGGCCA	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	221, 985
BbvI	GCAGC	2 cut(s)	61, 76
BccI	CCATC	3 cut(s)	629, 713, 950
BceAI	ACGGC	1 cut(s)	893
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 515, 549
BciT130I	CCWGG	1 cut(s)	866
BciVI	GTATCC	4 cut(s)	133, 449, 770, 796
BcoDI	GTCTC	4 cut(s)	42, 728, 878, 987
BfaI	CTAG	5 cut(s)	305, 339, 396, 405, 450
BfuAI	ACCTGC	2 cut(s)	547, 860
BfuI	GTATCC	4 cut(s)	133, 449, 770, 796
BisI	GCNGC	2 cut(s)	75, 90
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	2 cut(s)	76, 91
Bme1390I	CCNGG	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	866
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	2 cut(s)	517, 627
BmuI	ACTGGG	1 cut(s)	790
BpmI	CTGGAG	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	433, 454
BsaI	GGTCTC	3 cut(s)	728, 878, 987
BsaJI	CCNNGG	6 cut(s)	126, 468, 537, 864, 892, 936
BsaWI	WCCGGW	2 cut(s)	520, 571
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 305, 969
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	5 cut(s)	611, 632, 785, 886, 1023
Bse3DI	GCAATG	2 cut(s)	60, 327
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	6 cut(s)	126, 468, 537, 864, 892, 936
BseGI	GGATG	2 cut(s)	621, 724
BseLI	CCNNNNNNNGG	3 cut(s)	149, 305, 969
BseMI	GCAATG	2 cut(s)	60, 327
BseMII	CTCAG	2 cut(s)	53, 113
BseNI	ACTGG	5 cut(s)	611, 632, 785, 886, 1023
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	2 cut(s)	388, 977
BseXI	GCAGC	2 cut(s)	61, 76
BseYI	CCCAGC	1 cut(s)	353
Bsh1285I	CGRYCG	2 cut(s)	189, 525
BshFI	GGCC	6 cut(s)	431, 498, 585, 764, 941, 951
BsiEI	CGRYCG	2 cut(s)	189, 525
BsiHKAI	GWGCWC	2 cut(s)	221, 985
BsiSI	CCGG	3 cut(s)	299, 521, 572
BslI	CCNNNNNNNGG	3 cut(s)	149, 305, 969
BsmAI	GTCTC	4 cut(s)	42, 728, 878, 987
BsmBI	CGTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	6 cut(s)	431, 498, 585, 764, 941, 951
Bso31I	GGTCTC	3 cut(s)	728, 878, 987
Bsp1286I	GDGCHC	4 cut(s)	221, 388, 977, 985
Bsp143I	GATC	3 cut(s)	156, 474, 654
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	2 cut(s)	537, 936
BspACI	CCGC	2 cut(s)	24, 51
BspANI	GGCC	6 cut(s)	431, 498, 585, 764, 941, 951
BspCNI	CTCAG	2 cut(s)	52, 112
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	2 cut(s)	547, 860
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	3 cut(s)	728, 878, 987
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	2 cut(s)	60, 327
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	5 cut(s)	611, 632, 785, 886, 1023
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	6 cut(s)	126, 468, 537, 864, 892, 936
BssMI	GATC	3 cut(s)	156, 474, 654
BssT1I	CCWWGG	4 cut(s)	126, 537, 892, 936
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	2 cut(s)	285, 772
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	105, 335, 883
BstDEI	CTNAG	2 cut(s)	39, 99
BstDSI	CCRYGG	2 cut(s)	537, 936
BstF5I	GGATG	2 cut(s)	621, 724
BstKTI	GATC	3 cut(s)	159, 477, 657
BstMAI	GTCTC	4 cut(s)	42, 728, 878, 987
BstMBI	GATC	3 cut(s)	156, 474, 654
BstMCI	CGRYCG	2 cut(s)	189, 525
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 95, 104, 755
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	864
BstSLI	GKGCMC	2 cut(s)	388, 977
BstV1I	GCAGC	2 cut(s)	61, 76
BstXI	CCANNNNNNTGG	1 cut(s)	893
BsuI	GTATCC	4 cut(s)	133, 449, 770, 796
BsuRI	GGCC	6 cut(s)	431, 498, 585, 764, 941, 951
BtgI	CCRYGG	2 cut(s)	537, 936
BtsCI	GGATG	2 cut(s)	621, 724
BtsI	GCAGTG	2 cut(s)	78, 765
BtsIMutI	CAGTG	3 cut(s)	78, 639, 765
BveI	ACCTGC	2 cut(s)	547, 860
Cac8I	GCNNGC	3 cut(s)	105, 335, 883
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	949
Csp6I	GTAC	1 cut(s)	660
CspCI	CAANNNNNGTGG	6 cut(s)	67, 102, 358, 393, 445, 480
CviAII	CATG	7 cut(s)	160, 538, 755, 921, 937, 946, 1033
CviQI	GTAC	1 cut(s)	660
DdeI	CTNAG	2 cut(s)	39, 99
DpnI	GATC	3 cut(s)	158, 476, 656
DpnII	GATC	3 cut(s)	156, 474, 654
EaeI	YGGCCR	1 cut(s)	939
Eco130I	CCWWGG	4 cut(s)	126, 537, 892, 936
Eco147I	AGGCCT	1 cut(s)	498
Eco31I	GGTCTC	3 cut(s)	728, 878, 987
EcoRI	GAATTC	1 cut(s)	987
EcoRII	CCWGG	1 cut(s)	864
EcoT14I	CCWWGG	4 cut(s)	126, 537, 892, 936
ErhI	CCWWGG	4 cut(s)	126, 537, 892, 936
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	7 cut(s)	163, 541, 758, 924, 940, 949, 1036
FatI	CATG	7 cut(s)	159, 537, 754, 920, 936, 945, 1032
Fnu4HI	GCNGC	2 cut(s)	75, 90
FokI	GGATG	2 cut(s)	608, 731
Fsp4HI	GCNGC	2 cut(s)	75, 90
FspBI	CTAG	5 cut(s)	305, 339, 396, 405, 450
GluI	GCNGC	2 cut(s)	75, 90
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	6 cut(s)	431, 498, 585, 764, 941, 951
HapII	CCGG	3 cut(s)	299, 521, 572
Hin1II	CATG	7 cut(s)	163, 541, 758, 924, 940, 949, 1036
HinfI	GANTC	2 cut(s)	32, 174
HpaII	CCGG	3 cut(s)	299, 521, 572
HphI	GGTGA	4 cut(s)	38, 358, 484, 610
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	594, 728
Hpy188III	TCNNGA	2 cut(s)	412, 992
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	2 cut(s)	285, 772
HpyCH4IV	ACGT	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 95, 104, 755
HpyF3I	CTNAG	2 cut(s)	39, 99
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	7 cut(s)	163, 541, 758, 924, 940, 949, 1036
Kzo9I	GATC	3 cut(s)	156, 474, 654
LmnI	GCTCC	5 cut(s)	11, 224, 458, 863, 897
Lsp1109I	GCAGC	2 cut(s)	61, 76
LweI	GCATC	2 cut(s)	517, 627
MaeI	CTAG	5 cut(s)	305, 339, 396, 405, 450
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	478, 574, 616
MalI	GATC	3 cut(s)	158, 476, 656
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	3 cut(s)	156, 474, 654
MboII	GAAGA	2 cut(s)	824, 827
MfeI	CAATTG	1 cut(s)	462
MhlI	GDGCHC	4 cut(s)	221, 388, 977, 985
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	7 cut(s)	315, 462, 504, 690, 705, 792, 987
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	754
Mox20I	TGGCCA	1 cut(s)	941
MroXI	GAANNNNTTC	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	3 cut(s)	314, 503, 693
MslI	CAYNNNNRTG	1 cut(s)	848
Msp20I	TGGCCA	1 cut(s)	941
MspI	CCGG	3 cut(s)	299, 521, 572
MspR9I	CCNGG	1 cut(s)	866
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 95, 104, 755
NcoI	CCATGG	2 cut(s)	537, 936
NdeII	GATC	3 cut(s)	156, 474, 654
NlaIII	CATG	7 cut(s)	163, 541, 758, 924, 940, 949, 1036
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	574, 616
NspI	RCATGY	1 cut(s)	924
PceI	AGGCCT	1 cut(s)	498
PctI	GAATGC	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	76, 91
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	864
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	949
RsaI	GTAC	1 cut(s)	661
RsaNI	GTAC	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	848
SaqAI	TTAA	3 cut(s)	314, 503, 693
SatI	GCNGC	2 cut(s)	75, 90
Sau3AI	GATC	3 cut(s)	156, 474, 654
Sau96I	GGNCC	1 cut(s)	949
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	4 cut(s)	221, 388, 977, 985
SetI	ASST	9 cut(s)	45, 113, 256, 393, 455, 561, 860, 874, 999
SfaNI	GCATC	2 cut(s)	517, 627
SmiMI	CAYNNNNRTG	1 cut(s)	848
SmlI	CTYRAG	2 cut(s)	412, 433
SmoI	CTYRAG	2 cut(s)	412, 433
Sse9I	AATT	7 cut(s)	315, 462, 504, 690, 705, 792, 987
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	2 cut(s)	24, 51
SspI	AATATT	3 cut(s)	227, 345, 552
SspMI	CTAG	5 cut(s)	305, 339, 396, 405, 450
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	864
StyI	CCWWGG	4 cut(s)	126, 537, 892, 936
TaaI	ACNGT	2 cut(s)	285, 772
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	189, 525, 985, 991
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	7 cut(s)	315, 462, 504, 690, 705, 792, 987
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	3 cut(s)	314, 503, 693
Tru9I	TTAA	3 cut(s)	314, 503, 693
TscAI	CASTG	3 cut(s)	85, 639, 765
TseFI	GTSAC	2 cut(s)	574, 616
TseI	GCWGC	2 cut(s)	74, 89
Tsp45I	GTSAC	2 cut(s)	574, 616
TspDTI	ATGAA	4 cut(s)	654, 743, 825, 1032
TspRI	CASTG	3 cut(s)	85, 639, 765
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	3 cut(s)	705, 792, 987
XceI	RCATGY	1 cut(s)	924
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	5 cut(s)	305, 339, 396, 405, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.