Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008339

Physical Location & Seq

Genomic Coordinates Forward (+)

43752589 .. 43753988

Gene Structure 1400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCATTTGGCGTGCCTAGAATATTCTACGCTGGGTTTGTCCTCACCACTTGTGTTGCAGGGGCACAGCTATCTAGTTATGCTAGTTTCTTGAGCAAAGGAGATGTGGCCTTGAGTATCCTCCTCACTAGCTCCACCACAATTGCCTCGGTGATTGTTACCCCTCTACTGACAGGCCTTTTAATTGGTTCTGTTGTTCCGGTCGATGCTGTTGCCATGGCAAAGTCAATATTGCAGGTTGTTCTTGTTCCAGTCACTATTGGCCTTGCGCTGAATACTTATGCCAAACCAGTTGTCACCATCCTTCAACCAGTGATGCCATTTGTTGCTATGATCTGTACTTCATTGTGCATTGGCAGTCCTCTTGCAATTAATCAAAGACAAATTCTGTCTATGGATGGTCTCCGATTGATATTTCCTGTTTTAGCATTTCATGCAGTGGCCTTTACTGTTGGATACTGGGTATCCAAAATTCCAAGTGTAAGGCAAGAAGAAGAAGTTAGCAGAACACTTTCATTATGCACAGGAATGCAAAGCTCCACCCTGGCGGGTCTCCTTGCAAGCCAGTTCCTTGGGAGCAGTCAAGCCGTTCCTCCAGCATGTTCAGTTGTTGCCATGGCCATCATGGGCCTTTTCCTTGCCTCTTTCTGGGGCACAGGTGCTCGAATTCGAGACCTTTCTTCCCGACTAATGCCTCAAACCAGTTCTACCATGAAGGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

241

Amino Acids

25.24

Weight (kDa)

9.33

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	3 - 131	4.1e-20	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25410
fragaria_vesca	FvH4_2g17730 FvH4_2g17730 FvH4_2g17730 FvH4_2g17730
malus_domestica	MD05G1158500.v1.1 MD10G1151500.v1.1
prunus_persica	Prupe.8G189900_v2.0.a1
pyrus_communis	pycom05g15050 pycom10g13060
rosa_chinensis	RchiOBHm_Chr1g0359741 RchiOBHm_Chr6g0282771
rosa_laevigata	RLG00000012871
rosa_multiflora	Rmu_sc0009684.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186080
rosa_rugosa	Rorug06G0149100
rosa_samantha	Rh1AG286400 Rh1BG252400 Rh6AG262400 Rh6BG265400 Rh6CG264700 Rh6DG257200
rosa_wichuraiana	Rw6G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	1 cut(s)	548
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	3 cut(s)	384, 471, 666
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	648
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	3 cut(s)	70, 132, 537
AluI	AGCT	3 cut(s)	70, 132, 537
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	3 cut(s)	407, 557, 666
AoxI	GGCC	6 cut(s)	108, 175, 262, 441, 618, 628
ApoI	RAATTY	3 cut(s)	384, 471, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	37, 163, 289
BaeGI	GKGCMC	2 cut(s)	67, 656
BalI	TGGCCA	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	664
BccI	CCATC	3 cut(s)	308, 392, 629
BceAI	ACGGC	1 cut(s)	572
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	545
BciVI	GTATCC	3 cut(s)	128, 449, 475
BcoDI	GTCTC	3 cut(s)	407, 557, 666
BfaI	CTAG	4 cut(s)	18, 75, 84, 129
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	3 cut(s)	128, 449, 475
Bme1390I	CCNGG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	196, 306
BmuI	ACTGGG	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	112, 133
BsaI	GGTCTC	3 cut(s)	407, 557, 666
BsaJI	CCNNGG	5 cut(s)	147, 216, 543, 571, 615
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse1I	ACTGG	6 cut(s)	251, 290, 311, 464, 565, 702
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	5 cut(s)	147, 216, 543, 571, 615
BseGI	GGATG	2 cut(s)	300, 403
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseNI	ACTGG	6 cut(s)	251, 290, 311, 464, 565, 702
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	2 cut(s)	67, 656
BseYI	CCCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	6 cut(s)	110, 177, 264, 443, 620, 630
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	3 cut(s)	407, 557, 666
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	6 cut(s)	110, 177, 264, 443, 620, 630
Bso31I	GGTCTC	3 cut(s)	407, 557, 666
Bsp1286I	GDGCHC	3 cut(s)	67, 656, 664
Bsp143I	GATC	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	216, 615
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	6 cut(s)	110, 177, 264, 443, 620, 630
BspMI	ACCTGC	1 cut(s)	226
BspTNI	GGTCTC	3 cut(s)	407, 557, 666
BsrI	ACTGG	6 cut(s)	251, 290, 311, 464, 565, 702
BssECI	CCNNGG	5 cut(s)	147, 216, 543, 571, 615
BssMI	GATC	1 cut(s)	333
BssT1I	CCWWGG	3 cut(s)	216, 571, 615
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	14, 562
BstDSI	CCRYGG	2 cut(s)	216, 615
BstF5I	GGATG	2 cut(s)	300, 403
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	3 cut(s)	407, 557, 666
BstMBI	GATC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	543
BstSLI	GKGCMC	2 cut(s)	67, 656
BstXI	CCANNNNNNTGG	1 cut(s)	572
BsuI	GTATCC	3 cut(s)	128, 449, 475
BsuRI	GGCC	6 cut(s)	110, 177, 264, 443, 620, 630
BtgI	CCRYGG	2 cut(s)	216, 615
BtsCI	GGATG	2 cut(s)	300, 403
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	318, 444
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	14, 562
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	339
CspCI	CAANNNNNGTGG	4 cut(s)	37, 72, 124, 159
CviAII	CATG	6 cut(s)	217, 434, 600, 616, 625, 712
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	618
Eco130I	CCWWGG	3 cut(s)	216, 571, 615
Eco147I	AGGCCT	1 cut(s)	177
Eco31I	GGTCTC	3 cut(s)	407, 557, 666
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	3 cut(s)	216, 571, 615
ErhI	CCWWGG	3 cut(s)	216, 571, 615
FaeI	CATG	6 cut(s)	220, 437, 603, 619, 628, 715
FatI	CATG	6 cut(s)	216, 433, 599, 615, 624, 711
FauI	CCCGC	1 cut(s)	541
FokI	GGATG	2 cut(s)	287, 410
FspBI	CTAG	4 cut(s)	18, 75, 84, 129
GlaI	GCGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	6 cut(s)	110, 177, 264, 443, 620, 630
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	6 cut(s)	220, 437, 603, 619, 628, 715
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	37, 163, 289
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	3 cut(s)	91, 671, 684
HpyAV	CCTTC	2 cut(s)	314, 709
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	8 cut(s)	59, 235, 351, 368, 437, 522, 532, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92II	CATG	6 cut(s)	220, 437, 603, 619, 628, 715
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	137, 542, 576
LweI	GCATC	2 cut(s)	196, 306
MaeI	CTAG	4 cut(s)	18, 75, 84, 129
MaeIII	GTNAC	3 cut(s)	157, 253, 295
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	3 cut(s)	503, 506, 672
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	3 cut(s)	67, 656, 664
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	6 cut(s)	141, 183, 369, 384, 471, 666
MluNI	TGGCCA	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	53, 131, 134, 157, 174, 372, 603, 652, 705
Mox20I	TGGCCA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	2 cut(s)	182, 372
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	620
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	1 cut(s)	434
NcoI	CCATGG	2 cut(s)	216, 615
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	6 cut(s)	220, 437, 603, 619, 628, 715
NmuCI	GTSAC	2 cut(s)	253, 295
NspI	RCATGY	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	628
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	182, 372
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	3 cut(s)	67, 656, 664
SetI	ASST	6 cut(s)	72, 134, 240, 539, 661, 678
SfaNI	GCATC	2 cut(s)	196, 306
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	91, 112
SmoI	CTYRAG	2 cut(s)	91, 112
Sse9I	AATT	6 cut(s)	141, 183, 369, 384, 471, 666
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	548
SspI	AATATT	2 cut(s)	24, 231
SspMI	CTAG	4 cut(s)	18, 75, 84, 129
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	3 cut(s)	216, 571, 615
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	204, 664, 670
TasI	AATT	6 cut(s)	141, 183, 369, 384, 471, 666
TatI	WGTACW	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	182, 372
Tru9I	TTAA	2 cut(s)	182, 372
TscAI	CASTG	2 cut(s)	318, 444
TseFI	GTSAC	2 cut(s)	253, 295
Tsp45I	GTSAC	2 cut(s)	253, 295
TspDTI	ATGAA	4 cut(s)	333, 422, 504, 711
TspRI	CASTG	2 cut(s)	318, 444
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	3 cut(s)	384, 471, 666
XceI	RCATGY	1 cut(s)	603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	4 cut(s)	18, 75, 84, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.