Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008339

Physical Location & Seq

Genomic Coordinates Forward (+)

16529061 .. 16531215

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTTCCTTTCGTCGTTGCTTCTACCGCCATTGCTGCTCTGGCTCAGCCGTCAACGTTCACTTGGGTATCCAAGGATTTATATGCCCCTGCTCTTGGTGGGATCATGCTGTCAATTGGAGTCAAACTGTCGATTGATGATTTTGCTCTTGCATTCAAAAGACCTTTACCCCTCTCTGTTGGGTTTATCGCGCAGTATGTACTGAAACCGGTACTTGGGGTACTAATTGCTAACGCATTTGGCGTGCCAAGGATGTTCTACGCTGGCTTTGTCCTCACTGCTTGTGTTGCAGGGGCTCAGCTGTCTAGCTACGCTAGTTTCTTGAGCAAAGGAGACGTGGCCTTGAGCATTCTCCTCACCAGCACCAGCACCATTGCTTCCGTGATCGTAACCCCTTTACTAACTGGCCTTTTAATCGGTTCTGTTGTTCCGGTTGATGCTGTTGCCATGTCAAAGTCGATATTGCAGGTGGTTCTTGTTCCGGTCACAATTGGTCTTGTGCTCAATACTTATGCAAAACCAGTTGTCAATTTCCTTCGACCAGTGATGCCAGTCGTTGCTATGATATGCACTTCATTGTGCATTGGCAGTCCTCTTGCAATTAACCGGAGTCAAATTCTATCTGTAGAGGGTTTCCGGTTGATATTTCCAGTCATAGCATTTCATGCGGTGGCCTTTACACTTGGATACTGGGTATCCAAAACTCCAGGTTTGAGGCAAGAAGAAGAAGTTAGCAGGACACTTTCCTTATGTACGGGAATGCAGAGTTCCACTTTGGCAGGGTTACTTGCAAGCCAATTCCTTGGGAGCAGCCAGGCCGTTCCTCCAGCATGTTCGGTTGTTGCCATGGCCATCTTGGGCCTTTTTCTTGCATCTTTCTGGGGCACCGGCTCTCAAATCAGAGACCTTCCGTCCCTACTAACACCTCGAACAGGTTCTCCAGTGAAGCACAGAACATTACAAGGACGATACAACAAAAAGGAAGATCGCTGTCATGTTGAACCACCTCAACTGGTTTGGAAAGCAACTACTGCTTACAGAGAGGATCGGGAACCGAAAACAGACAGACGGGGGGAAAACATAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

363

Amino Acids

38.6

Weight (kDa)

9.53

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25410
fragaria_vesca	FvH4_2g17730 FvH4_2g17730 FvH4_2g17730 FvH4_2g17730
malus_domestica	MD05G1158500.v1.1 MD10G1151500.v1.1
prunus_persica	Prupe.8G189900_v2.0.a1
pyrus_communis	pycom05g15050 pycom10g13060
rosa_chinensis	RchiOBHm_Chr1g0359741 RchiOBHm_Chr6g0282771
rosa_laevigata	RLG00000012871
rosa_multiflora	Rmu_sc0009684.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186080
rosa_rugosa	Rorug06G0149100
rosa_samantha	Rh1AG286400 Rh1BG252400 Rh6AG262400 Rh6BG265400 Rh6CG264700 Rh6DG257200
rosa_wichuraiana	Rw6G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	884
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	27, 668
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	2 cut(s)	110, 1053
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	615
AfaI	GTAC	4 cut(s)	201, 213, 222, 754
AfiI	CCNNNNNNNGG	3 cut(s)	95, 215, 932
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	157, 1001
AhdI	GACNNNNNGTC	1 cut(s)	910
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	706, 813
AloI	GAACNNNNNNTCC	2 cut(s)	922, 954
AluBI	AGCT	2 cut(s)	301, 309
AluI	AGCT	2 cut(s)	301, 309
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	327, 897
AlwI	GGATC	2 cut(s)	110, 1053
AoxI	GGCC	6 cut(s)	339, 406, 672, 816, 849, 859
ApeKI	GCWGC	2 cut(s)	35, 810
ApoI	RAATTY	1 cut(s)	615
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	934
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	859
AsuHPI	GGTGA	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	887
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BalI	TGGCCA	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	22, 822
BccI	CCATC	1 cut(s)	860
BceAI	ACGGC	2 cut(s)	34, 803
BciT130I	CCWGG	2 cut(s)	708, 815
BciVI	GTATCC	3 cut(s)	79, 680, 706
BcoDI	GTCTC	2 cut(s)	327, 897
BfaI	CTAG	2 cut(s)	306, 315
BfmI	CTRYAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	457
BfuI	GTATCC	3 cut(s)	79, 680, 706
BisI	GCNGC	2 cut(s)	36, 811
BlpI	GCTNAGC	2 cut(s)	45, 297
BlsI	GCNGC	2 cut(s)	37, 812
Bme1390I	CCNGG	2 cut(s)	708, 815
BmeRI	GACNNNNNGTC	1 cut(s)	910
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	2 cut(s)	886, 1053
BmrFI	CCNGG	2 cut(s)	708, 815
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	3 cut(s)	427, 537, 881
BmuI	ACTGGG	1 cut(s)	700
BpmI	CTGGAG	3 cut(s)	690, 810, 924
Bpu1102I	GCTNAGC	2 cut(s)	45, 297
BpuEI	CTTGAG	2 cut(s)	343, 364
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	4 cut(s)	72, 248, 802, 846
BsaWI	WCCGGW	5 cut(s)	208, 430, 481, 606, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 215, 932
Bse118I	RCCGGY	2 cut(s)	208, 887
Bse1I	ACTGG	8 cut(s)	409, 521, 542, 551, 650, 695, 941, 1017
Bse3DI	GCAATG	2 cut(s)	30, 372
BseBI	CCWGG	2 cut(s)	708, 815
BseDI	CCNNGG	4 cut(s)	72, 248, 802, 846
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	95, 215, 932
BseMI	GCAATG	2 cut(s)	30, 372
BseMII	CTCAG	2 cut(s)	59, 311
BseNI	ACTGG	8 cut(s)	409, 521, 542, 551, 650, 695, 941, 1017
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	2 cut(s)	22, 822
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	6 cut(s)	341, 408, 674, 818, 851, 861
BshNI	GGYRCC	1 cut(s)	884
BshTI	ACCGGT	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	6 cut(s)	209, 431, 482, 607, 637, 888
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	3 cut(s)	95, 215, 932
BsmAI	GTCTC	2 cut(s)	327, 897
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	898
BsmI	GAATGC	3 cut(s)	152, 348, 765
BsnI	GGCC	6 cut(s)	341, 408, 674, 818, 851, 861
Bso31I	GGTCTC	1 cut(s)	897
Bsp1286I	GDGCHC	3 cut(s)	298, 504, 887
Bsp143I	GATC	4 cut(s)	102, 384, 985, 1045
Bsp1720I	GCTNAGC	2 cut(s)	45, 297
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	2 cut(s)	27, 668
BspANI	GGCC	6 cut(s)	341, 408, 674, 818, 851, 861
BspCNI	CTCAG	2 cut(s)	58, 310
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	886, 1053
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	110, 1053
BspT107I	GGYRCC	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	897
BsrDI	GCAATG	2 cut(s)	30, 372
BsrFI	RCCGGY	2 cut(s)	208, 887
BsrI	ACTGG	8 cut(s)	409, 521, 542, 551, 650, 695, 941, 1017
BssAI	RCCGGY	2 cut(s)	208, 887
BssECI	CCNNGG	4 cut(s)	72, 248, 802, 846
BssMI	GATC	4 cut(s)	102, 384, 985, 1045
BssT1I	CCWWGG	4 cut(s)	72, 248, 802, 846
Bst2UI	CCWGG	2 cut(s)	708, 815
Bst4CI	ACNGT	1 cut(s)	129
BstAPI	GCANNNNNTGC	2 cut(s)	665, 1031
BstC8I	GCNNGC	3 cut(s)	245, 265, 793
BstDEI	CTNAG	2 cut(s)	45, 297
BstDSI	CCRYGG	1 cut(s)	846
BstENI	CCTNNNNNAGG	1 cut(s)	930
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	105, 387, 988, 1048
BstMAI	GTCTC	2 cut(s)	327, 897
BstMBI	GATC	4 cut(s)	102, 384, 985, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 35, 41, 287, 665, 1031
BstNI	CCWGG	2 cut(s)	708, 815
BstNSI	RCATGY	1 cut(s)	834
BstSCI	CCNGG	2 cut(s)	706, 813
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	22, 822
BstXI	CCANNNNNNTGG	1 cut(s)	803
BsuI	GTATCC	3 cut(s)	79, 680, 706
BsuRI	GGCC	6 cut(s)	341, 408, 674, 818, 851, 861
BtgI	CCRYGG	1 cut(s)	846
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	276, 549, 948
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	245, 265, 793
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	2 cut(s)	208, 887
Cfr13I	GGNCC	1 cut(s)	859
Csp6I	GTAC	4 cut(s)	200, 212, 221, 753
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	6 cut(s)	106, 448, 665, 831, 847, 995
CviQI	GTAC	4 cut(s)	200, 212, 221, 753
DdeI	CTNAG	2 cut(s)	45, 297
DpnI	GATC	4 cut(s)	104, 386, 987, 1047
DpnII	GATC	4 cut(s)	102, 384, 985, 1045
DriI	GACNNNNNGTC	1 cut(s)	910
EaeI	YGGCCR	1 cut(s)	849
Eam1105I	GACNNNNNGTC	1 cut(s)	910
Eco130I	CCWWGG	4 cut(s)	72, 248, 802, 846
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	897
EcoNI	CCTNNNNNAGG	1 cut(s)	930
EcoRII	CCWGG	2 cut(s)	706, 813
EcoT14I	CCWWGG	4 cut(s)	72, 248, 802, 846
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	4 cut(s)	72, 248, 802, 846
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	6 cut(s)	109, 451, 668, 834, 850, 998
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	6 cut(s)	105, 447, 664, 830, 846, 994
Fnu4HI	GCNGC	2 cut(s)	36, 811
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	36, 811
FspBI	CTAG	2 cut(s)	306, 315
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	36, 811
GsuI	CTGGAG	3 cut(s)	690, 810, 924
HaeIII	GGCC	6 cut(s)	341, 408, 674, 818, 851, 861
HapII	CCGG	6 cut(s)	209, 431, 482, 607, 637, 888
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	109, 451, 668, 834, 850, 998
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	120, 610
HpaII	CCGG	6 cut(s)	209, 431, 482, 607, 637, 888
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	54, 60
Hpy188I	TCNGA	1 cut(s)	902
Hpy188III	TCNNGA	2 cut(s)	322, 1049
Hpy8I	GTNNAC	2 cut(s)	54, 60
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	545, 917
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	2 cut(s)	56, 336
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 35, 41, 287, 665, 1031
HpyF3I	CTNAG	2 cut(s)	45, 297
HpySE526I	ACGT	2 cut(s)	56, 336
Hsp92II	CATG	6 cut(s)	109, 451, 668, 834, 850, 998
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	102, 384, 985, 1045
LmnI	GCTCC	1 cut(s)	807
Lsp1109I	GCAGC	2 cut(s)	22, 822
LweI	GCATC	3 cut(s)	427, 537, 881
MaeI	CTAG	2 cut(s)	306, 315
MaeII	ACGT	2 cut(s)	56, 336
MaeIII	GTNAC	3 cut(s)	388, 484, 783
MalI	GATC	4 cut(s)	104, 386, 987, 1047
MboI	GATC	4 cut(s)	102, 384, 985, 1045
MboII	GAAGA	3 cut(s)	734, 737, 995
MfeI	CAATTG	2 cut(s)	114, 489
MhlI	GDGCHC	3 cut(s)	298, 504, 887
MlsI	TGGCCA	1 cut(s)	851
MluCI	AATT	7 cut(s)	114, 225, 489, 529, 600, 615, 797
MluNI	TGGCCA	1 cut(s)	851
MlyI	GAGTC	2 cut(s)	129, 619
Mox20I	TGGCCA	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	851
MseI	TTAA	2 cut(s)	413, 603
Msp20I	TGGCCA	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	6 cut(s)	209, 431, 482, 607, 637, 888
MspR9I	CCNGG	2 cut(s)	708, 815
MunI	CAATTG	2 cut(s)	114, 489
Mva1269I	GAATGC	3 cut(s)	152, 348, 765
MvaI	CCWGG	2 cut(s)	708, 815
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	6 cut(s)	26, 35, 41, 287, 665, 1031
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	4 cut(s)	102, 384, 985, 1045
NlaIII	CATG	6 cut(s)	109, 451, 668, 834, 850, 998
NlaIV	GGNNCC	2 cut(s)	886, 1053
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	834
PaqCI	CACCTGC	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	3 cut(s)	152, 348, 765
PdmI	GAANNNNTTC	1 cut(s)	934
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	37, 812
PleI	GAGTC	2 cut(s)	128, 618
PpsI	GAGTC	2 cut(s)	128, 618
Psp1406I	AACGTT	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	706, 813
PspGI	CCWGG	2 cut(s)	706, 813
PspN4I	GGNNCC	2 cut(s)	886, 1053
PspPI	GGNCC	1 cut(s)	859
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	4 cut(s)	201, 213, 222, 754
RsaNI	GTAC	4 cut(s)	200, 212, 221, 753
SaqAI	TTAA	2 cut(s)	413, 603
SatI	GCNGC	2 cut(s)	36, 811
Sau3AI	GATC	4 cut(s)	102, 384, 985, 1045
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	2 cut(s)	129, 619
ScrFI	CCNGG	2 cut(s)	708, 815
SduI	GDGCHC	3 cut(s)	298, 504, 887
SfaNI	GCATC	3 cut(s)	427, 537, 881
SfcI	CTRYAG	1 cut(s)	624
SmlI	CTYRAG	2 cut(s)	322, 343
SmoI	CTYRAG	2 cut(s)	322, 343
Sse9I	AATT	7 cut(s)	114, 225, 489, 529, 600, 615, 797
SsiI	CCGC	2 cut(s)	27, 668
SspMI	CTAG	2 cut(s)	306, 315
StyD4I	CCNGG	2 cut(s)	706, 813
StyI	CCWWGG	4 cut(s)	72, 248, 802, 846
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	2 cut(s)	59, 339
TaqI	TCGA	4 cut(s)	131, 458, 538, 928
TasI	AATT	7 cut(s)	114, 225, 489, 529, 600, 615, 797
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	413, 603
Tru9I	TTAA	2 cut(s)	413, 603
TscAI	CASTG	3 cut(s)	283, 549, 948
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	35, 810
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	564, 653
TspGWI	ACGGA	2 cut(s)	370, 900
TspRI	CASTG	3 cut(s)	283, 549, 948
XagI	CCTNNNNNAGG	1 cut(s)	930
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 853
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	2 cut(s)	306, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.