Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008339

Physical Location & Seq

Genomic Coordinates Reverse (-)

38127227 .. 38129834

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGAGAGATTCTATCTATCAGTTGTGGGGTGTGGTCGGAGCAGTGAAGCGGCGGAAAGGTGGTAATGGGTGGGGAGCAGCAGTGCATTGGCAGCAAGGTGAGGGTGATGTTGCTCATCTACGGGATGACCACAAGAGGGGGTTCAGAAATGGGGGTCTGTCGATAAAGGGTTGCTCGACGTCGCCGTTTATAGGAAGAGTTGGGTCGCAGCGGAGGGAAGGAAACTCTTCGTTGCTTTCGTTTGGGATAAACCCACCAACGGCTATGTCCAAAGGAGCCGAACAGAGTGGTGAGGGCTCGTCTCAGGTCTTATCCGCAATGCTTCCATTTGTGGTTGCTGCCACTGCTATTGCTGCTTTGGCTCAGCCTGCCACGTTTACTTGGATATCCAAGGATTTATACGCCCCTGCTCTTGGTGGGATCATGCTCTCCATTGGAATCAAACTTTCTGTCGATGATTTTGCTCTTGCTGTCAAAAGACCTTTACCACTCTCTATTGGGTTTATCGCGCAGTGTGTACTGAAACCGGCTCTAGGGGTGTTAATTGCAATGGCATTTGGCGTGCCTAGAATATTCTACGCTGGGTTTGTCCTCACCACTTGTGCTGCAGGGGCACAGCTGTCTAGTTATGCTAGTTTCTTGAGCAAAGGAGATGTGGCCTTGAGCAGGAAGAAGAAGTTAGCAGAACACTTTCATTATGCACTGGAATGCAAAGCTCCACCCTGGCGGGTCTCCTTGCAAGCCAGTTCCTTGGGAGCAGTAGTCAAGCCGTTCCTCCAGCATGTTCGGTTGTTGCCATGGCCATCATGGGCCTTTTTCTTGCCTCTTTCTGGGGCACGGGTGCTCGAATTCGAGACCTTTCTTCCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

291

Amino Acids

31.2

Weight (kDa)

9.94

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF	PF01758	137 - 223	2.1e-15	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25410
fragaria_vesca	FvH4_2g17730 FvH4_2g17730 FvH4_2g17730 FvH4_2g17730
malus_domestica	MD05G1158500.v1.1 MD10G1151500.v1.1
prunus_persica	Prupe.8G189900_v2.0.a1
pyrus_communis	pycom05g15050 pycom10g13060
rosa_chinensis	RchiOBHm_Chr1g0359741 RchiOBHm_Chr6g0282771
rosa_laevigata	RLG00000012871
rosa_multiflora	Rmu_sc0009684.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186080
rosa_rugosa	Rorug06G0149100
rosa_samantha	Rh1AG286400 Rh1BG252400 Rh6AG262400 Rh6BG265400 Rh6CG264700 Rh6DG257200
rosa_wichuraiana	Rw6G022670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
AccII	CGCG	1 cut(s)	512
AciI	CCGC	5 cut(s)	52, 55, 214, 318, 730
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	1 cut(s)	851
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	7 cut(s)	139, 194, 262, 416, 536, 669, 833
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	2 cut(s)	622, 719
AluI	AGCT	2 cut(s)	622, 719
Alw21I	GWGCWC	1 cut(s)	849
Alw26I	GTCTC	3 cut(s)	309, 739, 851
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	3 cut(s)	660, 803, 813
ApeKI	GCWGC	6 cut(s)	80, 94, 211, 341, 356, 608
ApoI	RAATTY	1 cut(s)	851
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
Asp700I	GAANNNNTTC	2 cut(s)	229, 693
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	813
AsuHPI	GGTGA	4 cut(s)	113, 119, 305, 589
BaeGI	GKGCMC	2 cut(s)	619, 841
BalI	TGGCCA	1 cut(s)	805
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	849
BbvI	GCAGC	6 cut(s)	92, 106, 223, 328, 343, 595
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	3 cut(s)	172, 279, 757
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	727
BcoDI	GTCTC	3 cut(s)	309, 739, 851
BfaI	CTAG	4 cut(s)	536, 570, 627, 636
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	7 cut(s)	53, 81, 95, 212, 342, 357, 609
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	7 cut(s)	54, 82, 96, 213, 343, 358, 610
Bme1390I	CCNGG	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	813
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	727
BpmI	CTGGAG	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	664, 685
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	739, 851
BsaJI	CCNNGG	4 cut(s)	393, 725, 753, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 750, 780
Bsc4I	CCNNNNNNNGG	7 cut(s)	139, 194, 262, 416, 536, 669, 833
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	711, 747
Bse3DI	GCAATG	2 cut(s)	327, 558
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	4 cut(s)	393, 725, 753, 800
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	7 cut(s)	139, 194, 262, 416, 536, 669, 833
BseMI	GCAATG	2 cut(s)	327, 558
BseMII	CTCAG	2 cut(s)	320, 380
BseNI	ACTGG	2 cut(s)	711, 747
BseSI	GKGCMC	2 cut(s)	619, 841
BseXI	GCAGC	6 cut(s)	92, 106, 223, 328, 343, 595
BseYI	CCCAGC	1 cut(s)	584
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	3 cut(s)	662, 805, 815
BsiHKAI	GWGCWC	1 cut(s)	849
BsiSI	CCGG	1 cut(s)	530
BslI	CCNNNNNNNGG	7 cut(s)	139, 194, 262, 416, 536, 669, 833
BsmAI	GTCTC	3 cut(s)	309, 739, 851
BsmBI	CGTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	3 cut(s)	662, 805, 815
Bso31I	GGTCTC	2 cut(s)	739, 851
Bsp1286I	GDGCHC	4 cut(s)	302, 619, 841, 849
Bsp143I	GATC	1 cut(s)	423
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp19I	CCATGG	1 cut(s)	800
BspACI	CCGC	5 cut(s)	52, 55, 214, 318, 730
BspANI	GGCC	3 cut(s)	662, 805, 815
BspCNI	CTCAG	2 cut(s)	319, 379
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	739, 851
BsrDI	GCAATG	2 cut(s)	327, 558
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	711, 747
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	393, 725, 753, 800
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	3 cut(s)	393, 753, 800
Bst2UI	CCWGG	1 cut(s)	727
Bst6I	CTCTTC	2 cut(s)	193, 235
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	372, 566, 744
BstDEI	CTNAG	2 cut(s)	306, 366
BstDSI	CCRYGG	1 cut(s)	800
BstENI	CCTNNNNNAGG	1 cut(s)	667
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	3 cut(s)	309, 739, 851
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 347, 356, 362, 371, 614
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	2 cut(s)	619, 841
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	6 cut(s)	92, 106, 223, 328, 343, 595
BstXI	CCANNNNNNTGG	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	662, 805, 815
BtgI	CCRYGG	1 cut(s)	800
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	4 cut(s)	51, 90, 345, 521
BtsIMutI	CAGTG	5 cut(s)	51, 90, 345, 521, 704
Cac8I	GCNNGC	3 cut(s)	372, 566, 744
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	813
Csp6I	GTAC	1 cut(s)	521
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	4 cut(s)	427, 785, 801, 810
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	2 cut(s)	306, 366
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	2 cut(s)	193, 235
EarI	CTCTTC	2 cut(s)	193, 235
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	393, 753, 800
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	739, 851
Eco32I	GATATC	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	725
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	3 cut(s)	393, 753, 800
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	3 cut(s)	393, 753, 800
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	4 cut(s)	430, 788, 804, 813
FaiI	YATR	9 cut(s)	194, 269, 403, 428, 633, 702, 786, 802, 811
FatI	CATG	4 cut(s)	426, 784, 800, 809
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	7 cut(s)	53, 81, 95, 212, 342, 357, 609
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	7 cut(s)	53, 81, 95, 212, 342, 357, 609
FspBI	CTAG	4 cut(s)	536, 570, 627, 636
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	7 cut(s)	53, 81, 95, 212, 342, 357, 609
GsaI	CCCAGC	1 cut(s)	588
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	662, 805, 815
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	430, 788, 804, 813
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	2 cut(s)	11, 441
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	4 cut(s)	113, 119, 305, 589
Hpy166II	GTNNAC	2 cut(s)	381, 521
Hpy188I	TCNGA	2 cut(s)	41, 149
Hpy188III	TCNNGA	2 cut(s)	643, 856
Hpy8I	GTNNAC	2 cut(s)	381, 521
Hpy99I	CGWCG	2 cut(s)	184, 187
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	182, 377
HpyCH4V	TGCA	6 cut(s)	88, 551, 611, 704, 714, 742
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 347, 356, 362, 371, 614
HpyF3I	CTNAG	2 cut(s)	306, 366
HpySE526I	ACGT	2 cut(s)	182, 377
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	4 cut(s)	430, 788, 804, 813
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	5 cut(s)	41, 77, 278, 724, 758
Lsp1109I	GCAGC	6 cut(s)	92, 106, 223, 328, 343, 595
MaeI	CTAG	4 cut(s)	536, 570, 627, 636
MaeII	ACGT	2 cut(s)	182, 377
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	6 cut(s)	16, 210, 222, 685, 688, 857
MhlI	GDGCHC	4 cut(s)	302, 619, 841, 849
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	2 cut(s)	546, 851
MluNI	TGGCCA	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	97, 132, 210, 289, 605, 788, 837
Mox20I	TGGCCA	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	229, 693
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	709
Msp20I	TGGCCA	1 cut(s)	805
MspA1I	CMGCKG	2 cut(s)	214, 622
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	727
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	6 cut(s)	94, 347, 356, 362, 371, 614
NcoI	CCATGG	1 cut(s)	800
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	4 cut(s)	430, 788, 804, 813
NlaIV	GGNNCC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 239
PctI	GAATGC	1 cut(s)	716
PdmI	GAANNNNTTC	2 cut(s)	229, 693
PfeI	GAWTC	2 cut(s)	11, 441
PkrI	GCNGC	7 cut(s)	54, 82, 96, 213, 343, 358, 610
Psp6I	CCWGG	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	813
PstI	CTGCAG	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	7 cut(s)	53, 81, 95, 212, 342, 357, 609
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	813
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	4 cut(s)	302, 619, 841, 849
SetI	ASST	9 cut(s)	64, 103, 185, 312, 380, 487, 624, 721, 863
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	2 cut(s)	643, 664
SmoI	CTYRAG	2 cut(s)	643, 664
Sse9I	AATT	2 cut(s)	546, 851
SsiI	CCGC	5 cut(s)	52, 55, 214, 318, 730
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	4 cut(s)	536, 570, 627, 636
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	3 cut(s)	393, 753, 800
TaiI	ACGT	2 cut(s)	185, 380
TaqI	TCGA	5 cut(s)	164, 179, 456, 849, 855
TasI	AATT	2 cut(s)	546, 851
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	11, 441
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	5 cut(s)	51, 90, 352, 521, 711
TseI	GCWGC	6 cut(s)	80, 94, 211, 341, 356, 608
TspDTI	ATGAA	2 cut(s)	17, 686
TspRI	CASTG	5 cut(s)	51, 90, 352, 521, 711
XagI	CCTNNNNNAGG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	851
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	807
XmnI	GAANNNNTTC	2 cut(s)	229, 693
XspI	CTAG	4 cut(s)	536, 570, 627, 636
ZraI	GACGTC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.