Rh1AG286400

sodium metabolite cotransporter BASS3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008339
Physical Location & Seq
Reverse (-)
51526292 .. 51527370
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG286400.1

Sequence Viewer

Length: 504 bp
ATGTCGCCGTTTATAGGAAGAGTTGGGTCGCAGCGGAGGGATGGAAACTCTTCGTTGCTTTCGTTTGGGATAAACCCACCAACGGCTATGTCCAAAGGAGCCGAACAGAGTGGTGAGGACTCGTCTCAGGTCTTATCCGCAATGCTTCCATTTGTGGTTGCTGCCACTGCTATTGCTGCTTTGGCTCAGCCTGCCACGTTTACTTGGATATCCAAGGATTTATACGCCCCTGCTCTTGGTGGGATCATGCTCTCCATTGGAATCAAACTTTCCGTCGATGATTTTGCTCTTGCTGTCAAAAGACCTTTACCACTCTCTATTGGGTTTATCGCGCAGTATGTGCTGAAACCGGCTTTACGGGTGTTAATTGCAATGGCATTTGGCGTGCCTAGAATATTCTACGCTGGGTTTGTCCTCACCACTTGTGTTGCAGGGGCACAGCTGTCTAGTTATGCTAGTTTCTTGAGCAAAGGAGATGTGGCCTTGAGTATTCCTCCTCACTAG

Protein Analysis

167

Amino Acids

17.43

Weight (kDa)

9.46

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF PF01758 77 - 164 5.4e-17 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 332
AciI CCGC 2 cut(s) 34, 138
AclWI GGATC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 14, 82, 236
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 3 cut(s) 31, 161, 176
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 125, 409
BaeGI GKGCMC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 43, 148, 163
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 4 cut(s) 390, 447, 456, 502
BisI GCNGC 3 cut(s) 32, 162, 177
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 33, 163, 178
BmiI GGNNCC 1 cut(s) 100
BplI GAGNNNNNCTC 1 cut(s) 478
Bpu1102I GCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 82, 236
Bse118I RCCGGY 1 cut(s) 349
Bse3DI GCAATG 2 cut(s) 147, 378
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 3 cut(s) 14, 82, 236
BseMI GCAATG 2 cut(s) 147, 378
BseMII CTCAG 2 cut(s) 140, 200
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 3 cut(s) 43, 148, 163
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 482
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 14, 82, 236
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 2 cut(s) 34, 138
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 2 cut(s) 139, 199
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 147, 378
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 13, 55
BstAPI GCANNNNNTGC 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 192, 386
BstDEI CTNAG 2 cut(s) 126, 186
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 5 cut(s) 167, 176, 182, 191, 340
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 43, 148, 163
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 192, 386
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 349
CspCI CAANNNNNGTGG 4 cut(s) 154, 189, 409, 444
CviAII CATG 1 cut(s) 247
CviJI RGCY 7 cut(s) 86, 101, 185, 190, 353, 442, 482
CviKI_1 RGCY 7 cut(s) 86, 101, 185, 190, 353, 442, 482
DdeI CTNAG 2 cut(s) 126, 186
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 13, 55
EarI CTCTTC 2 cut(s) 13, 55
Eco130I CCWWGG 1 cut(s) 213
Eco32I GATATC 1 cut(s) 210
EcoRV GATATC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 14, 89, 223, 248, 339, 453
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 32, 162, 177
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 32, 162, 177
FspBI CTAG 4 cut(s) 390, 447, 456, 502
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 32, 162, 177
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 334
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 2 cut(s) 119, 261
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 125, 409
Hpy166II GTNNAC 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 371, 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 176, 182, 191, 340
HpyF3I CTNAG 2 cut(s) 126, 186
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 6 cut(s) 113, 204, 243, 363, 390, 417
Lsp1109I GCAGC 3 cut(s) 43, 148, 163
MaeI CTAG 4 cut(s) 390, 447, 456, 502
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 30, 42
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 1 cut(s) 366
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 4 cut(s) 30, 109, 425, 504
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 34, 442
MspI CCGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 167, 176, 182, 191, 340
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 3 cut(s) 33, 163, 178
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 442
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 3 cut(s) 32, 162, 177
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 439
SetI ASST 4 cut(s) 132, 200, 307, 444
SmlI CTYRAG 2 cut(s) 463, 484
SmoI CTYRAG 2 cut(s) 463, 484
Sse9I AATT 1 cut(s) 366
SsiI CCGC 2 cut(s) 34, 138
SspI AATATT 1 cut(s) 396
SspMI CTAG 4 cut(s) 390, 447, 456, 502
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 366
TfiI GAWTC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 172
TseI GCWGC 3 cut(s) 31, 161, 176
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 4 cut(s) 390, 447, 456, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.