Prupe.8G223100_v2.0.a1

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
20175816 .. 20178606
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G223100.1

Sequence Viewer

Length: 1530 bp
ATGCTTTGTTGCGGATTGACAAATAAGACAACTTTTTTGCAGAAAAGCATTAAGGACAAACTTGCAAACTTGGCTCGGGAGAAGCAGAATATAAAAGAAGAGATAGATCGTAGCAGTCCTGAACTTCTGAAGTTGAAGCAAGCTGTAGATAAGCGGAGCAAAGAAATCAATAAGCTTGAGAAGAGGATAAATGAAATTGTTGACAGAATCTACAAAGATTTTAGTAAATCTGTTGGGGTGGCAAACATCCGTGAGTACGAGGAAAATCAACTCAAGGCTTCCCAATATATGGCTGACGAGAGGCTTAGTTTGAGTAGCCAGCTGTCAAAGTTGAAATACCAGTTAGAGTATGAGCAAAATCGGGACATGGAATCGCGGATTAAAGAACTTCAACATTCTATTAGTAATTTGCAAAAAGATTTAGAACGGGTTCAGAAGAAAGAGGCTGAAGCCAAGTCAGCGGCTGAAAAAGCTTCTGGTGAAATTCTTCGATGGAAGGAAGAAGTACAAGAATGGAAATCCAAGTCAGAAGGGTGTGAGAAGGAAATCCAGGAATGGAACAAGCGGGGTTCTACAGCTACAACAAGCGTATCCAAACTTAATCGACAGATAAATTCTAAGGAGGCACAGATTGAGCAGCTGATGTCACGGAAGCAGGAAATAGTAGAAAAATGTGAACTAGAACAAATAAGCCTACCCATCATCTCAGATCCAATGGAGACTGAATCCTCCACAATGGGCCCAGTTTTTGATTTTAGTCAGTTAAATAGGTCTCAATTGCAGGATAGAAGGCCCTCTGAACGGGAGAAACTTGAGGTGGAATTTAAGCAAAAAATGGATGCCCTAACATCGGAAATCGAAAGAACAGCTCCAAATATGAAGGCCCTGGACCAATACGAGGCTTTAAAAGAAAAGGAAAGGGGTGTGACTGAAGAGTTTGAAGTGGCTAGAAAAGAAGAGAAAGAAAAAGCTGATCTGTTTAACTCAGTTAAGCAGAAGAGGTACGAATTGTTTATGGATGCATTCAACCATATATCTAGTAATATTGATAAGATATACAAACAACTCACAAAGAGCAACACACATCCACTGGGTGGAACGGCATATTTGAATTTAGAAAATGAAGATGATCCATTTTTACATGGCATCAAGTATACCGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAACAATTATCTGGCGGAGAAAAAACTGTTGCAGCATTGGCATTACTCTTTTCGATACACAGTTTTAGGCCTTCACCATTTTTCATACTGGATGAAGTCGATGCTGCACTAGATAACTTAAATGTTGCTAAGGTTGCTGGATTCATCCGTTCGAAGTCCCGTGAAGGAGCCAGGGAGAACCAGGATGATGATGGAGGCAGCGGTTTTCAGAGCATCGTAATATCTCTAAAAGATAGCTTCTATGACAAGGCCGATGCTTTAGTTGGGGTTTACAGGGACTGTGAAAGGAGCTGTTCGGAAACTCTGACATTTGACCTGACGAAATATCGGGAGTCATGA

Protein Analysis

510

Amino Acids

58.68

Weight (kDa)

5.81

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 289, 1094
AccI GTMKAC 1 cut(s) 1154
AccII CGCG 1 cut(s) 376
AciI CCGC 8 cut(s) 12, 154, 376, 461, 565, 1158, 1206, 1392
AclWI GGATC 2 cut(s) 704, 1124
AcsI RAATTY 4 cut(s) 483, 613, 821, 1111
AcuI CTGAAG 3 cut(s) 149, 468, 951
AdeI CACNNNGTG 1 cut(s) 1094
AfaI GTAC 3 cut(s) 257, 507, 1004
AfeI AGCGCT 1 cut(s) 1178
AfiI CCNNNNNNNGG 5 cut(s) 289, 801, 850, 898, 1094
AgsI TTSAA 6 cut(s) 136, 334, 392, 941, 1027, 1111
AjnI CCWGG 4 cut(s) 549, 885, 1361, 1371
Alw26I GTCTC 2 cut(s) 713, 777
AlwI GGATC 2 cut(s) 704, 1124
AlwNI CAGNNNCTG 2 cut(s) 464, 1470
Ama87I CYCGRG 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 1178
AoxI GGCC 5 cut(s) 739, 791, 882, 1259, 1440
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 4 cut(s) 637, 1223, 1295, 1389
ApoI RAATTY 4 cut(s) 483, 613, 821, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
Asp700I GAANNNNTTC 2 cut(s) 429, 486
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 5 cut(s) 739, 740, 792, 883, 889
AsuHPI GGTGA 2 cut(s) 491, 1257
AsuII TTCGAA 1 cut(s) 1343
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 889
BaeGI GKGCMC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BanII GRGCYC 1 cut(s) 743
BbvI GCAGC 4 cut(s) 649, 1235, 1282, 1401
BccI CCATC 3 cut(s) 486, 707, 1376
BceAI ACGGC 1 cut(s) 1116
BciT130I CCWGG 4 cut(s) 551, 887, 1363, 1373
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 2 cut(s) 713, 777
BfaI CTAG 4 cut(s) 680, 948, 1038, 1301
BfmI CTRYAG 2 cut(s) 144, 573
BfoI RGCGCY 1 cut(s) 1180
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 5 cut(s) 462, 638, 1224, 1296, 1390
BlsI GCNGC 5 cut(s) 463, 639, 1225, 1297, 1391
Bme1390I CCNGG 4 cut(s) 551, 887, 1363, 1373
Bme18I GGWCC 1 cut(s) 889
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 5 cut(s) 739, 740, 792, 883, 889
BmiI GGNNCC 2 cut(s) 741, 1360
BmrFI CCNGG 4 cut(s) 551, 887, 1363, 1373
BmrI ACTGGG 2 cut(s) 737, 1100
BmsI GCATC 6 cut(s) 829, 1009, 1155, 1282, 1413, 1435
BmuI ACTGGG 2 cut(s) 737, 1100
Bpu10I CCTNAGC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 1343
BpuEI CTTGAG 3 cut(s) 197, 257, 833
BsaI GGTCTC 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 885, 1362
Bsc4I CCNNNNNNNGG 5 cut(s) 289, 801, 850, 898, 1094
Bse1I ACTGG 4 cut(s) 340, 743, 1095, 1284
BseBI CCWGG 4 cut(s) 551, 887, 1363, 1373
BseDI CCNNGG 2 cut(s) 885, 1362
BseGI GGATG 7 cut(s) 246, 844, 1024, 1084, 1288, 1335, 1381
BseLI CCNNNNNNNGG 5 cut(s) 289, 801, 850, 898, 1094
BseMII CTCAG 2 cut(s) 720, 999
BseNI ACTGG 4 cut(s) 340, 743, 1095, 1284
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 4 cut(s) 649, 1235, 1282, 1401
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 5 cut(s) 741, 793, 884, 1261, 1442
BsiHKCI CYCGRG 1 cut(s) 75
BslFI GGGAC 3 cut(s) 377, 1333, 1481
BslI CCNNNNNNNGG 5 cut(s) 289, 801, 850, 898, 1094
BsmAI GTCTC 2 cut(s) 713, 777
BsmFI GGGAC 3 cut(s) 377, 1333, 1481
BsmI GAATGC 1 cut(s) 1022
BsnI GGCC 5 cut(s) 741, 793, 884, 1261, 1442
Bso31I GGTCTC 1 cut(s) 777
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 1343
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 4 cut(s) 106, 709, 973, 1129
BspACI CCGC 8 cut(s) 12, 154, 376, 461, 565, 1158, 1206, 1392
BspANI GGCC 5 cut(s) 741, 793, 884, 1261, 1442
BspCNI CTCAG 2 cut(s) 719, 998
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 1 cut(s) 1526
BspLI GGNNCC 2 cut(s) 741, 1360
BspPI GGATC 2 cut(s) 704, 1124
BspT104I TTCGAA 1 cut(s) 1343
BspTNI GGTCTC 1 cut(s) 777
BsrI ACTGG 4 cut(s) 340, 743, 1095, 1284
BssECI CCNNGG 2 cut(s) 885, 1362
BssMI GATC 4 cut(s) 106, 709, 973, 1129
BssNAI GTATAC 1 cut(s) 1155
Bst1107I GTATAC 1 cut(s) 1155
Bst2UI CCWGG 4 cut(s) 551, 887, 1363, 1373
Bst4CI ACNGT 3 cut(s) 1219, 1253, 1472
Bst6I CTCTTC 5 cut(s) 93, 176, 927, 951, 992
BstBI TTCGAA 1 cut(s) 1343
BstC8I GCNNGC 2 cut(s) 141, 320
BstDEI CTNAG 5 cut(s) 305, 618, 706, 985, 1320
BstF5I GGATG 7 cut(s) 246, 844, 1024, 1084, 1288, 1335, 1381
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 1180
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 4 cut(s) 109, 712, 976, 1132
BstMAI GTCTC 2 cut(s) 713, 777
BstMBI GATC 4 cut(s) 106, 709, 973, 1129
BstMWI GCNNNNNNNGC 5 cut(s) 71, 458, 470, 1229, 1325
BstNI CCWGG 4 cut(s) 551, 887, 1363, 1373
BstSCI CCNGG 4 cut(s) 549, 885, 1361, 1371
BstSFI CTRYAG 2 cut(s) 144, 573
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 649, 1235, 1282, 1401
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 5 cut(s) 741, 793, 884, 1261, 1442
BtsCI GGATG 7 cut(s) 246, 844, 1024, 1084, 1288, 1335, 1381
BtsIMutI CAGTG 1 cut(s) 1088
Cac8I GCNNGC 2 cut(s) 141, 320
CaiI CAGNNNCTG 2 cut(s) 464, 1470
CciI TCATGA 1 cut(s) 1526
CfoI GCGC 1 cut(s) 1179
Cfr13I GGNCC 5 cut(s) 739, 740, 792, 883, 889
Csp6I GTAC 3 cut(s) 256, 506, 1003
CviAII CATG 3 cut(s) 367, 1142, 1527
CviQI GTAC 3 cut(s) 256, 506, 1003
DdeI CTNAG 5 cut(s) 305, 618, 706, 985, 1320
DpnI GATC 4 cut(s) 108, 711, 975, 1131
DpnII GATC 4 cut(s) 106, 709, 973, 1129
DraI TTTAAA 1 cut(s) 906
DraIII CACNNNGTG 1 cut(s) 1094
Eam1104I CTCTTC 5 cut(s) 93, 176, 927, 951, 992
EarI CTCTTC 5 cut(s) 93, 176, 927, 951, 992
EciI GGCGGA 1 cut(s) 1221
Eco147I AGGCCT 1 cut(s) 1261
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 889
Eco47III AGCGCT 1 cut(s) 1178
Eco57I CTGAAG 3 cut(s) 149, 468, 951
Eco88I CYCGRG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 792, 883
EcoRII CCWGG 4 cut(s) 549, 885, 1361, 1371
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 1 cut(s) 743
FaeI CATG 3 cut(s) 370, 1145, 1530
FaqI GGGAC 3 cut(s) 377, 1333, 1481
FatI CATG 3 cut(s) 366, 1141, 1526
FauI CCCGC 1 cut(s) 558
FblI GTMKAC 1 cut(s) 1154
Fnu4HI GCNGC 5 cut(s) 462, 638, 1224, 1296, 1390
FokI GGATG 7 cut(s) 233, 851, 1031, 1071, 1295, 1322, 1388
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 5 cut(s) 462, 638, 1224, 1296, 1390
FspBI CTAG 4 cut(s) 680, 948, 1038, 1301
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 5 cut(s) 462, 638, 1224, 1296, 1390
HaeII RGCGCY 1 cut(s) 1180
HaeIII GGCC 5 cut(s) 741, 793, 884, 1261, 1442
HhaI GCGC 1 cut(s) 1179
Hin1II CATG 3 cut(s) 370, 1145, 1530
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 173, 471
HinfI GANTC 5 cut(s) 207, 371, 725, 1332, 1523
HphI GGTGA 2 cut(s) 491, 1257
Hpy166II GTNNAC 4 cut(s) 202, 677, 1155, 1462
Hpy188I TCNGA 9 cut(s) 129, 435, 529, 709, 799, 853, 1401, 1489, 1497
Hpy188III TCNNGA 6 cut(s) 77, 119, 362, 1184, 1520, 1527
Hpy8I GTNNAC 4 cut(s) 202, 677, 1155, 1462
HpyAV CCTTC 7 cut(s) 490, 524, 535, 783, 874, 1272, 1349
HpyCH4III ACNGT 3 cut(s) 1219, 1253, 1472
HpyCH4V TGCA 7 cut(s) 40, 65, 412, 781, 1022, 1223, 1298
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 458, 470, 1229, 1325
HpyF3I CTNAG 5 cut(s) 305, 618, 706, 985, 1320
Hsp92II CATG 3 cut(s) 370, 1145, 1530
HspAI GCGC 1 cut(s) 1177
Kzo9I GATC 4 cut(s) 106, 709, 973, 1129
LmnI GCTCC 4 cut(s) 156, 874, 1358, 1479
Lsp1109I GCAGC 4 cut(s) 649, 1235, 1282, 1401
LweI GCATC 6 cut(s) 829, 1009, 1155, 1282, 1413, 1435
MaeI CTAG 4 cut(s) 680, 948, 1038, 1301
MaeIII GTNAC 2 cut(s) 645, 925
MalI GATC 4 cut(s) 108, 711, 975, 1131
MboI GATC 4 cut(s) 106, 709, 973, 1129
MboII GAAGA 9 cut(s) 110, 193, 448, 479, 512, 944, 968, 1009, 1136
MfeI CAATTG 1 cut(s) 776
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 9 cut(s) 195, 406, 483, 613, 776, 821, 1007, 1111, 1196
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 2 cut(s) 429, 486
MseI TTAA 9 cut(s) 51, 381, 600, 764, 825, 905, 981, 990, 1310
MspA1I CMGCKG 4 cut(s) 322, 461, 640, 1392
MspR9I CCNGG 4 cut(s) 551, 887, 1363, 1373
MunI CAATTG 1 cut(s) 776
Mva1269I GAATGC 1 cut(s) 1022
MvaI CCWGG 4 cut(s) 551, 887, 1363, 1373
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 5 cut(s) 71, 458, 470, 1229, 1325
NdeII GATC 4 cut(s) 106, 709, 973, 1129
NlaIII CATG 3 cut(s) 370, 1145, 1530
NlaIV GGNNCC 2 cut(s) 741, 1360
NmuCI GTSAC 2 cut(s) 645, 925
NsiI ATGCAT 1 cut(s) 1024
NspV TTCGAA 1 cut(s) 1343
PagI TCATGA 1 cut(s) 1526
PceI AGGCCT 1 cut(s) 1261
PctI GAATGC 1 cut(s) 1022
PdmI GAANNNNTTC 2 cut(s) 429, 486
PfeI GAWTC 4 cut(s) 207, 371, 725, 1332
PflMI CCANNNNNTGG 2 cut(s) 289, 1094
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 5 cut(s) 463, 639, 1225, 1297, 1391
Psp6I CCWGG 4 cut(s) 549, 885, 1361, 1371
PspGI CCWGG 4 cut(s) 549, 885, 1361, 1371
PspN4I GGNNCC 2 cut(s) 741, 1360
PspOMI GGGCCC 1 cut(s) 739
PspPI GGNCC 5 cut(s) 739, 740, 792, 883, 889
PstNI CAGNNNCTG 2 cut(s) 464, 1470
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 2 cut(s) 322, 640
RsaI GTAC 3 cut(s) 257, 507, 1004
RsaNI GTAC 3 cut(s) 256, 506, 1003
SaqAI TTAA 9 cut(s) 51, 381, 600, 764, 825, 905, 981, 990, 1310
SatI GCNGC 5 cut(s) 462, 638, 1224, 1296, 1390
Sau3AI GATC 4 cut(s) 106, 709, 973, 1129
Sau96I GGNCC 5 cut(s) 739, 740, 792, 883, 889
ScrFI CCNGG 4 cut(s) 551, 887, 1363, 1373
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 6 cut(s) 829, 1009, 1155, 1282, 1413, 1435
SfcI CTRYAG 2 cut(s) 144, 573
SfuI TTCGAA 1 cut(s) 1343
SinI GGWCC 1 cut(s) 889
SmlI CTYRAG 3 cut(s) 176, 272, 812
SmoI CTYRAG 3 cut(s) 176, 272, 812
Sse9I AATT 9 cut(s) 195, 406, 483, 613, 776, 821, 1007, 1111, 1196
SseBI AGGCCT 1 cut(s) 1261
SsiI CCGC 8 cut(s) 12, 154, 376, 461, 565, 1158, 1206, 1392
SspI AATATT 1 cut(s) 1045
SspMI CTAG 4 cut(s) 680, 948, 1038, 1301
StuI AGGCCT 1 cut(s) 1261
StyD4I CCNGG 4 cut(s) 549, 885, 1361, 1371
TaaI ACNGT 3 cut(s) 1219, 1253, 1472
TaqI TCGA 6 cut(s) 490, 604, 858, 1244, 1290, 1343
TasI AATT 9 cut(s) 195, 406, 483, 613, 776, 821, 1007, 1111, 1196
TatI WGTACW 1 cut(s) 505
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 4 cut(s) 207, 371, 725, 1332
Tru1I TTAA 9 cut(s) 51, 381, 600, 764, 825, 905, 981, 990, 1310
Tru9I TTAA 9 cut(s) 51, 381, 600, 764, 825, 905, 981, 990, 1310
TscAI CASTG 1 cut(s) 1095
TseFI GTSAC 2 cut(s) 645, 925
TseI GCWGC 4 cut(s) 637, 1223, 1295, 1389
Tsp45I GTSAC 2 cut(s) 645, 925
TspDTI ATGAA 6 cut(s) 207, 893, 1137, 1264, 1299, 1324
TspGWI ACGGA 3 cut(s) 239, 664, 1328
TspRI CASTG 1 cut(s) 1095
Van91I CCANNNNNTGG 2 cut(s) 289, 1094
VpaK11BI GGWCC 1 cut(s) 889
XapI RAATTY 4 cut(s) 483, 613, 821, 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1379
XmiI GTMKAC 1 cut(s) 1154
XmnI GAANNNNTTC 2 cut(s) 429, 486
XspI CTAG 4 cut(s) 680, 948, 1038, 1301
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.