Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

21324105 .. 21327093

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGAAGCAAGGTCAAAACAGTGGGATGATAAAAAAGTTGAAGGACTAAAGAAGAAGAAAGAACAATTTGAGTCAGAGTTGGAAGAGCTGGGGTCAATTAGAGAGATGCAGATAAAAGAGTCTGAGACAACTGGTAGAATTAGTGGACTCCAAAAAAAAATCCAGTATGCAGAGATTGAGAAGAAAAGCATTAAGGACAAACTCGTAACCTTGGCACGGGAAAAGCAGAATATAAAAGAAGAGATCGATCGCAGCAGTCCTGAACTTCTTAAGTTAAAGCAAGCTGTAGATAAGCGGAGCAAGGAAATCAATAAGCTTGAGAAGAGGATAAATGAAATTGTTGACAGAATCTACAAAGATTTTAGTAAATCTGTTGGGGTGGCAAACATCCGTGAGTATGAGGAAAATCAACTCAAGGCTTCCCAATATATGGCAGAAGAGAGGCTTAGTTTGAGTAGCCAGCTGTCAAAGTTGAAATACCAGTTAGAGTATGAGCAAAACCGGGACATGGAATCACGAATTAATGAACTCCAAGATTCTATTAGTAAATTTAAAAAAGCTTTAGAACGGGTTCAGAAGGAAGAGGCTGCAGCCAAGTCAGCAGCAGAAAAAGCTTCTGGTGAGATCGATCGGTGGAAGGAAGAAATACAAGAATGGAAATCCAAGTCAGAAGGGTGTGAGAAGGAAATCCAAGAATGGAACAAGCGGGGTTCTACAGTTACAACAAGTTTATCCAAACTTAATCGACAGATACACACTAAGGAGTCACAGATTGAGCAGCTGATGTCACAGAAGCAGGAAATAGTAGAGAAATGTGAATTAGAACATATAAACCTTCCCATCATCTCAGACCCAATGGAGATTGATTCCTCTTCAATGGGCCCAGTTTTCGATTTTAGTCAGTTAAACAAGTCTCACATGCGGGACAGAAGGCCTTCTGAACGGGAGAAGCTTGAGGTGGAATTTAAGCAAAAAATGGATGCCGTAATTTCAGAAATTGAAAAAACAGCTCCAAATTTGAAGGCCCTGGACCAATATGAGGCAATAAAAGAAAAGGAAAGAGCTGTAACTGAAGAGTTTGAAGTGGCTAGAATAGAAGAGAAGGAAAAAGCTGATATGTTTAACTCAGTTAAGCAGAAGAGGTACGAGTTGTTTATGGATGCCTTCCAACATATTTCCAGTAACATTGATAAGATATACAAACAACTGACGAAGAGCAACACACATCCACTGGGTGGGACGGCATATTTAAATTTGGAAAATGAAGATCGATCCGTTTTTACATGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000819 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008278 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

431

Amino Acids

50.47

Weight (kDa)

6.11

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	430, 1235
AciI	CCGC	3 cut(s)	295, 706, 922
AclWI	GGATC	1 cut(s)	1266
AcsI	RAATTY	4 cut(s)	548, 962, 1015, 1252
AcuI	CTGAAG	1 cut(s)	1092
AdeI	CACNNNGTG	1 cut(s)	1235
AfaI	GTAC	1 cut(s)	1145
AfiI	CCNNNNNNNGG	5 cut(s)	216, 430, 508, 1039, 1235
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	6 cut(s)	41, 475, 876, 1001, 1021, 1082
AjnI	CCWGG	1 cut(s)	1026
Alw26I	GTCTC	2 cut(s)	119, 918
AlwI	GGATC	1 cut(s)	1266
AoxI	GGCC	3 cut(s)	880, 932, 1023
ApaI	GGGCCC	1 cut(s)	884
ApeKI	GCWGC	5 cut(s)	252, 587, 590, 602, 778
ApoI	RAATTY	4 cut(s)	548, 962, 1015, 1252
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	2 cut(s)	570, 934
AspS9I	GGNCC	4 cut(s)	880, 881, 1024, 1030
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	884
BbvI	GCAGC	5 cut(s)	264, 574, 602, 614, 790
BccI	CCATC	1 cut(s)	848
BceAI	ACGGC	2 cut(s)	968, 1257
BciT130I	CCWGG	1 cut(s)	1028
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	2 cut(s)	119, 918
BfaI	CTAG	1 cut(s)	1089
BfmI	CTRYAG	3 cut(s)	285, 588, 714
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	5 cut(s)	253, 588, 591, 603, 779
BlsI	GCNGC	5 cut(s)	254, 589, 592, 604, 780
Bme1390I	CCNGG	2 cut(s)	503, 1028
Bme18I	GGWCC	1 cut(s)	1030
BmgT120I	GGNCC	4 cut(s)	880, 881, 1024, 1030
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	2 cut(s)	503, 1028
BmrI	ACTGGG	2 cut(s)	878, 1241
BmsI	GCATC	3 cut(s)	96, 970, 1150
BmuI	ACTGGG	2 cut(s)	878, 1241
BpuEI	CTTGAG	3 cut(s)	338, 398, 974
BpuMI	CCSGG	1 cut(s)	503
Bsa29I	ATCGAT	3 cut(s)	246, 627, 1270
BsaJI	CCNNGG	2 cut(s)	210, 1026
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 430, 508, 1039, 1235
Bse1I	ACTGG	6 cut(s)	136, 163, 481, 884, 1179, 1236
BseBI	CCWGG	1 cut(s)	1028
BseCI	ATCGAT	3 cut(s)	246, 627, 1270
BseDI	CCNNGG	2 cut(s)	210, 1026
BseGI	GGATG	5 cut(s)	31, 387, 985, 1165, 1225
BseLI	CCNNNNNNNGG	5 cut(s)	216, 430, 508, 1039, 1235
BseMII	CTCAG	3 cut(s)	114, 861, 1140
BseNI	ACTGG	6 cut(s)	136, 163, 481, 884, 1179, 1236
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	5 cut(s)	264, 574, 602, 614, 790
BseYI	CCCAGC	1 cut(s)	88
Bsh1285I	CGRYCG	2 cut(s)	250, 631
BshFI	GGCC	3 cut(s)	882, 934, 1025
BshVI	ATCGAT	3 cut(s)	246, 627, 1270
BsiEI	CGRYCG	2 cut(s)	250, 631
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	3 cut(s)	518, 938, 1252
BslI	CCNNNNNNNGG	5 cut(s)	216, 430, 508, 1039, 1235
BsmAI	GTCTC	2 cut(s)	119, 918
BsmFI	GGGAC	3 cut(s)	518, 938, 1252
BsnI	GGCC	3 cut(s)	882, 934, 1025
Bsp120I	GGGCCC	1 cut(s)	880
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
BspACI	CCGC	3 cut(s)	295, 706, 922
BspANI	GGCC	3 cut(s)	882, 934, 1025
BspCNI	CTCAG	3 cut(s)	115, 860, 1139
BspDI	ATCGAT	3 cut(s)	246, 627, 1270
BspLI	GGNNCC	1 cut(s)	882
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	1266
BspQI	GCTCTTC	2 cut(s)	78, 1208
BspTI	CTTAAG	1 cut(s)	269
BsrI	ACTGG	6 cut(s)	136, 163, 481, 884, 1179, 1236
BssECI	CCNNGG	2 cut(s)	210, 1026
BssMI	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	2 cut(s)	21, 718
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	282, 461
BstDEI	CTNAG	5 cut(s)	123, 446, 759, 847, 1126
BstF5I	GGATG	5 cut(s)	31, 387, 985, 1165, 1225
BstKTI	GATC	6 cut(s)	246, 250, 627, 631, 1270, 1274
BstMAI	GTCTC	2 cut(s)	119, 918
BstMBI	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
BstMCI	CGRYCG	2 cut(s)	250, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 611
BstNI	CCWGG	1 cut(s)	1028
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	2 cut(s)	501, 1026
BstSFI	CTRYAG	3 cut(s)	285, 588, 714
BstSLI	GKGCMC	1 cut(s)	884
BstV1I	GCAGC	5 cut(s)	264, 574, 602, 614, 790
Bsu15I	ATCGAT	3 cut(s)	246, 627, 1270
BsuRI	GGCC	3 cut(s)	882, 934, 1025
BsuTUI	ATCGAT	3 cut(s)	246, 627, 1270
BtsCI	GGATG	5 cut(s)	31, 387, 985, 1165, 1225
BtsIMutI	CAGTG	2 cut(s)	26, 1229
Cac8I	GCNNGC	2 cut(s)	282, 461
Cfr13I	GGNCC	4 cut(s)	880, 881, 1024, 1030
ClaI	ATCGAT	3 cut(s)	246, 627, 1270
Csp6I	GTAC	1 cut(s)	1144
CviAII	CATG	3 cut(s)	508, 919, 1284
CviQI	GTAC	1 cut(s)	1144
DdeI	CTNAG	5 cut(s)	123, 446, 759, 847, 1126
DpnI	GATC	6 cut(s)	245, 249, 626, 630, 1269, 1273
DpnII	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
DraI	TTTAAA	2 cut(s)	553, 1251
DraIII	CACNNNGTG	1 cut(s)	1235
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	1092
EcoO109I	RGGNCCY	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	511, 922, 1287
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	3 cut(s)	518, 938, 1252
FatI	CATG	3 cut(s)	507, 918, 1283
FauI	CCCGC	2 cut(s)	699, 915
Fnu4HI	GCNGC	5 cut(s)	253, 588, 591, 603, 779
FokI	GGATG	5 cut(s)	38, 374, 992, 1172, 1212
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	5 cut(s)	253, 588, 591, 603, 779
FspBI	CTAG	1 cut(s)	1089
GluI	GCNGC	5 cut(s)	253, 588, 591, 603, 779
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	882, 934, 1025
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	3 cut(s)	511, 922, 1287
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	4 cut(s)	314, 558, 612, 950
HinfI	GANTC	8 cut(s)	71, 119, 147, 348, 512, 536, 764, 866
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	146, 343
Hpy188I	TCNGA	7 cut(s)	76, 124, 576, 670, 850, 940, 994
Hpy188III	TCNNGA	2 cut(s)	260, 516
Hpy8I	GTNNAC	2 cut(s)	146, 343
HpyCH4III	ACNGT	2 cut(s)	21, 718
HpyCH4V	TGCA	3 cut(s)	109, 170, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 611
HpyF3I	CTNAG	5 cut(s)	123, 446, 759, 847, 1126
Hsp92II	CATG	3 cut(s)	511, 922, 1287
Kzo9I	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
LguI	GCTCTTC	2 cut(s)	78, 1208
LmnI	GCTCC	2 cut(s)	297, 1015
Lsp1109I	GCAGC	5 cut(s)	264, 574, 602, 614, 790
LweI	GCATC	3 cut(s)	96, 970, 1150
MaeI	CTAG	1 cut(s)	1089
MaeIII	GTNAC	6 cut(s)	205, 718, 765, 786, 1066, 1181
MalI	GATC	6 cut(s)	245, 249, 626, 630, 1269, 1273
MboI	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
MhlI	GDGCHC	1 cut(s)	884
MlyI	GAGTC	4 cut(s)	80, 128, 141, 773
MmeI	TCCRAC	2 cut(s)	60, 1192
MnlI	CCTC	8 cut(s)	318, 394, 435, 577, 880, 949, 1033, 1134
MroXI	GAANNNNTTC	2 cut(s)	570, 934
MspA1I	CMGCKG	2 cut(s)	463, 781
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	503, 1028
MvaI	CCWGG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	2 cut(s)	599, 611
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
NlaIII	CATG	3 cut(s)	511, 922, 1287
NlaIV	GGNNCC	1 cut(s)	882
NmuCI	GTSAC	2 cut(s)	765, 786
NspI	RCATGY	1 cut(s)	922
PceI	AGGCCT	1 cut(s)	934
PciSI	GCTCTTC	2 cut(s)	78, 1208
PdmI	GAANNNNTTC	2 cut(s)	570, 934
PfeI	GAWTC	4 cut(s)	348, 512, 536, 866
PflMI	CCANNNNNTGG	2 cut(s)	430, 1235
PkrI	GCNGC	5 cut(s)	254, 589, 592, 604, 780
Ple19I	CGATCG	2 cut(s)	250, 631
PleI	GAGTC	4 cut(s)	79, 127, 141, 772
PpsI	GAGTC	4 cut(s)	79, 127, 141, 772
PshBI	ATTAAT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	1 cut(s)	882
PspOMI	GGGCCC	1 cut(s)	880
PspPI	GGNCC	4 cut(s)	880, 881, 1024, 1030
PstI	CTGCAG	1 cut(s)	592
PvuI	CGATCG	2 cut(s)	250, 631
PvuII	CAGCTG	2 cut(s)	463, 781
RsaI	GTAC	1 cut(s)	1145
RsaNI	GTAC	1 cut(s)	1144
SapI	GCTCTTC	2 cut(s)	78, 1208
SatI	GCNGC	5 cut(s)	253, 588, 591, 603, 779
Sau3AI	GATC	6 cut(s)	243, 247, 624, 628, 1267, 1271
Sau96I	GGNCC	4 cut(s)	880, 881, 1024, 1030
SchI	GAGTC	4 cut(s)	80, 128, 141, 773
ScrFI	CCNGG	2 cut(s)	503, 1028
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	3 cut(s)	96, 970, 1150
SfcI	CTRYAG	3 cut(s)	285, 588, 714
SinI	GGWCC	1 cut(s)	1030
SmiI	ATTTAAAT	1 cut(s)	1251
SmlI	CTYRAG	4 cut(s)	269, 317, 413, 953
SmoI	CTYRAG	4 cut(s)	269, 317, 413, 953
SseBI	AGGCCT	1 cut(s)	934
SsiI	CCGC	3 cut(s)	295, 706, 922
SspMI	CTAG	1 cut(s)	1089
StuI	AGGCCT	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	501, 1026
StyI	CCWWGG	1 cut(s)	210
SwaI	ATTTAAAT	1 cut(s)	1251
TaaI	ACNGT	2 cut(s)	21, 718
TaqI	TCGA	5 cut(s)	246, 627, 745, 891, 1270
TfiI	GAWTC	4 cut(s)	348, 512, 536, 866
TscAI	CASTG	2 cut(s)	26, 1236
TseFI	GTSAC	2 cut(s)	765, 786
TseI	GCWGC	5 cut(s)	252, 587, 590, 602, 778
Tsp45I	GTSAC	2 cut(s)	765, 786
TspDTI	ATGAA	3 cut(s)	348, 540, 1278
TspGWI	ACGGA	2 cut(s)	380, 1264
TspRI	CASTG	2 cut(s)	26, 1236
Van91I	CCANNNNNTGG	2 cut(s)	430, 1235
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	1030
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	4 cut(s)	548, 962, 1015, 1252
XceI	RCATGY	1 cut(s)	922
XmnI	GAANNNNTTC	2 cut(s)	570, 934
XspI	CTAG	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.