Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420611.1

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

427 .. 906

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgccgtccctgatctcccagggcaaaatccaccgcctggagctcgagaatttcaagtcctaccggggccaccaggtcatcggccccttctccgacttcacggcgattatcggccccaatggctccggcaagtccaacctcatggacgccataagcttcgtccttggggtcaagaccggccagctccgtgggtcccagttgaaggacctgatctacgccatggacgacagtgagaagagcgagaaaggtcgcagggcgtttgtgagcttggtttaccagcttgcgaatgagtctgagatccagttcacaagggccatcactagctccggcggcagtgagtaccgcatagacggcaagtcggtatcgtgggaagcttataatgagaagcttaagtcccttggaattctagtcaaggctcgcaattttcttgtctttcaggttaatttcgttgaccgaatactcttaattgccatagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000819 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008278 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

9.36

Isoelectric Point (pI)

20.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	37
AciI	CCGC	3 cut(s)	34, 330, 343
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	49, 402
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	37, 202
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	55, 202
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	3 cut(s)	18, 36, 72
AluBI	AGCT	8 cut(s)	43, 156, 184, 267, 280, 324, 374, 388
AluI	AGCT	8 cut(s)	43, 156, 184, 267, 280, 324, 374, 388
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	5 cut(s)	67, 82, 112, 178, 312
ApoI	RAATTY	2 cut(s)	49, 402
AspS9I	GGNCC	6 cut(s)	67, 83, 113, 192, 205, 312
AsuC2I	CCSGG	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	192, 205
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	2 cut(s)	117, 367
BciT130I	CCWGG	3 cut(s)	20, 38, 74
BcnI	CCSGG	1 cut(s)	65
BfaI	CTAG	2 cut(s)	321, 407
BfrI	CTTAAG	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	4 cut(s)	20, 38, 65, 74
Bme18I	GGWCC	2 cut(s)	192, 205
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	6 cut(s)	67, 83, 113, 192, 205, 312
BmiI	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
BmrFI	CCNGG	4 cut(s)	20, 38, 65, 74
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	7 cut(s)	18, 19, 64, 163, 187, 219, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 202
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	196, 301
BseBI	CCWGG	3 cut(s)	20, 38, 74
BseDI	CCNNGG	7 cut(s)	18, 19, 64, 163, 187, 219, 397
BseLI	CCNNNNNNNGG	2 cut(s)	37, 202
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	196, 301
BshFI	GGCC	5 cut(s)	69, 84, 114, 180, 314
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	64, 126, 177, 327
BslFI	GGGAC	2 cut(s)	178, 379
BslI	CCNNNNNNNGG	2 cut(s)	37, 202
BsmFI	GGGAC	2 cut(s)	178, 379
BsnI	GGCC	5 cut(s)	69, 84, 114, 180, 314
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	12, 210, 297
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	34, 330, 343
BspANI	GGCC	5 cut(s)	69, 84, 114, 180, 314
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	196, 301
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	7 cut(s)	18, 19, 64, 163, 187, 219, 397
BssMI	GATC	3 cut(s)	12, 210, 297
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	3 cut(s)	163, 219, 397
Bst2UI	CCWGG	3 cut(s)	20, 38, 74
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	3 cut(s)	182, 282, 418
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	187, 219
BstKTI	GATC	3 cut(s)	15, 213, 300
BstMBI	GATC	3 cut(s)	12, 210, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 330, 351
BstNI	CCWGG	3 cut(s)	20, 38, 74
BstSCI	CCNGG	4 cut(s)	18, 36, 63, 72
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	2 cut(s)	142, 188
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	5 cut(s)	69, 84, 114, 180, 314
BtgI	CCRYGG	2 cut(s)	187, 219
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	235, 340
Cac8I	GCNNGC	3 cut(s)	182, 282, 418
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	6 cut(s)	67, 83, 113, 192, 205, 312
CseI	GACGC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	142, 220
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	14, 212, 299
DpnII	GATC	3 cut(s)	12, 210, 297
DriI	GACNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	230
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	163, 219, 397
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	192, 205
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	2 cut(s)	192, 205
EcoRI	GAATTC	1 cut(s)	402
EcoRII	CCWGG	3 cut(s)	18, 36, 72
EcoT14I	CCWWGG	3 cut(s)	163, 219, 397
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	3 cut(s)	163, 219, 397
FaeI	CATG	2 cut(s)	145, 223
FaiI	YATR	6 cut(s)	143, 152, 221, 347, 378, 473
FaqI	GGGAC	2 cut(s)	178, 379
FatI	CATG	2 cut(s)	141, 219
Fnu4HI	GCNGC	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	2 cut(s)	321, 407
GluI	GCNGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	5 cut(s)	69, 84, 114, 180, 314
HapII	CCGG	4 cut(s)	64, 126, 177, 327
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	145, 223
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	3 cut(s)	154, 372, 386
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	4 cut(s)	64, 126, 177, 327
Hpy166II	GTNNAC	3 cut(s)	274, 306, 451
Hpy188I	TCNGA	2 cut(s)	94, 295
Hpy188III	TCNNGA	2 cut(s)	46, 172
Hpy8I	GTNNAC	3 cut(s)	274, 306, 451
HpyAV	CCTTC	2 cut(s)	97, 196
HpyCH4III	ACNGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 330, 351
HpyF3I	CTNAG	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	145, 223
KflI	GGGWCCC	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	12, 210, 297
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	4 cut(s)	40, 128, 189, 329
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	2 cut(s)	321, 407
MalI	GATC	3 cut(s)	14, 212, 299
MboI	GATC	3 cut(s)	12, 210, 297
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	49, 402, 421, 442, 465
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	117, 159
MnlI	CCTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	390, 441, 464
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	4 cut(s)	64, 126, 177, 327
MspR9I	CCNGG	4 cut(s)	20, 38, 65, 74
MvaI	CCWGG	3 cut(s)	20, 38, 74
MwoI	GCNNNNNNNGC	3 cut(s)	120, 330, 351
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	12, 210, 297
NlaIII	CATG	2 cut(s)	145, 223
NlaIV	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
PaeR7I	CTCGAG	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	2 cut(s)	192, 205
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	2 cut(s)	192, 205
Psp6I	CCWGG	3 cut(s)	18, 36, 72
PspGI	CCWGG	3 cut(s)	18, 36, 72
PspN4I	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
PspPI	GGNCC	6 cut(s)	67, 83, 113, 192, 205, 312
PspPPI	RGGWCCY	2 cut(s)	192, 205
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	390, 441, 464
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	3 cut(s)	12, 210, 297
Sau96I	GGNCC	6 cut(s)	67, 83, 113, 192, 205, 312
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	4 cut(s)	20, 38, 65, 74
SduI	GDGCHC	1 cut(s)	45
SexAI	ACCWGGT	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	192, 205
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 389
SmoI	CTYRAG	2 cut(s)	44, 389
Sse9I	AATT	5 cut(s)	49, 402, 421, 442, 465
SsiI	CCGC	3 cut(s)	34, 330, 343
SspMI	CTAG	2 cut(s)	321, 407
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	18, 36, 63, 72
StyI	CCWWGG	3 cut(s)	163, 219, 397
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	468
TasI	AATT	5 cut(s)	49, 402, 421, 442, 465
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	3 cut(s)	390, 441, 464
Tru9I	TTAA	3 cut(s)	390, 441, 464
TscAI	CASTG	2 cut(s)	235, 340
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	235, 340
Van91I	CCANNNNNTGG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	192, 205
XapI	RAATTY	2 cut(s)	49, 402
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	2 cut(s)	321, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.