Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056790.1

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

acttacctcttgcagacattgagctcattggctctcgtgtttgcactgcatcattacaagcctacgcctctttatgtcatggatgaaattgatgctgccttagactttaagaatgtctccatcgttggtcattacgtgaaggaccagacaaaggatgcacagttcataatcgtaagccttagaaataatatgtttgagctagcggatcgacttgtggggatatacaaaactcataattgcacaaagagcattaccattaacccagggagttttgtgatctgcaatcaagctgctcaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0030261 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071103 GO:0071840 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

6.36

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	24, 199, 290
AluI	AGCT	3 cut(s)	24, 199, 290
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	95, 290
AspS9I	GGNCC	1 cut(s)	142
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	82, 277
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	96, 291
BlsI	GCNGC	2 cut(s)	97, 292
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	58, 82, 145
BmtI	GCTAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	262, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	262, 263
BseGI	GGATG	2 cut(s)	88, 160
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	82, 277
BsiHKAI	GWGCWC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	205, 276
BspACI	CCGC	1 cut(s)	203
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	262, 263
BssMI	GATC	2 cut(s)	205, 276
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	100, 179
BstF5I	GGATG	2 cut(s)	88, 160
BstKTI	GATC	2 cut(s)	208, 279
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	205, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	82, 277
BtsCI	GGATG	2 cut(s)	88, 160
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	6 cut(s)	24, 32, 61, 177, 199, 290
CviKI_1	RGCY	6 cut(s)	24, 32, 61, 177, 199, 290
DdeI	CTNAG	2 cut(s)	100, 179
DpnI	GATC	2 cut(s)	207, 278
DpnII	GATC	2 cut(s)	205, 276
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	1 cut(s)	82
FaiI	YATR	6 cut(s)	75, 80, 167, 191, 223, 234
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	96, 291
FokI	GGATG	2 cut(s)	95, 167
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	96, 291
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	96, 291
Hin1II	CATG	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	13, 44, 49, 158, 240, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	100, 179
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	205, 276
LpnPI	CCDG	3 cut(s)	158, 249, 276
Lsp1109I	GCAGC	2 cut(s)	82, 277
LweI	GCATC	3 cut(s)	58, 82, 145
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	135
MalI	GATC	2 cut(s)	207, 278
MboI	GATC	2 cut(s)	205, 276
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	2 cut(s)	87, 235
MnlI	CCTC	2 cut(s)	17, 78
MseI	TTAA	2 cut(s)	108, 258
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	2 cut(s)	205, 276
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	97, 292
Ppu21I	YACGTR	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	108, 258
SatI	GCNGC	2 cut(s)	96, 291
Sau3AI	GATC	2 cut(s)	205, 276
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	5 cut(s)	9, 26, 138, 201, 292
SfaNI	GCATC	3 cut(s)	58, 82, 145
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	87, 235
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	87, 235
Tru1I	TTAA	2 cut(s)	108, 258
Tru9I	TTAA	2 cut(s)	108, 258
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	95, 290
TspDTI	ATGAA	2 cut(s)	99, 154
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.