Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

20238099 .. 20244690

Gene Structure 6592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGCCGTCCCTGATCTCCCAGGGCAAAATCCACCGCCTGGAGCTCGAGAATTTCAAGTCCTACCGGGGCCACCAGGTCATCGGCCCCTTCTCCGACTTCACGGCGATTATCGGCCCCAATGGCTCCGGCAAGTCCAACCTCATGGACGCCATAAGCTTCGTCCTTGGGGTCAAGACCGGCCAGCTCCGTGGGTCCCAGTTGAAGGACCTGATCTACGCCATGGACGACAGTGAGAAGAGCGAGAAAGGCCGCAGGGCGTTTGTGAGCTTGGTTTACCAGCTTGCGAATGAGTCTGAGATCCAGTTCACAAGGGCCATCACTAGCTCCGGCGGCAGTGAGTACCGCATAGACGGCAAGTCAGTATCGTGGGAAGCTTATAATGACAAGCTTAAGTCCCTTGGAATTCTAGTCAAGGCTCGCAACTTTCTTGTCTTTCAGGGTGATGTCGAGTCCATTGCCTCTAAAAATCCTAAGGAACTCACTGGACTGCTTGAGCAGATCTCAGGGTCTGATGAGCTCAAGAGAGACTATGAAAGGTATGAAGAAGAGAAAGGCATAGCTGAAGAAAAAGCAGCCCTTGTTTATCAGAAAAAAAGAACCATAGTTGCGGAGAGGAAGCAAAAGAAAGAGCAAAAGGAAGAAGCTGAGAAGCACATTCGCCTGCAAAATGAACTGAAATCTTTGAAGAGAGAACACTTTTTGTGGCAGTTGCTTAACATAGAAAAAGATATAACGAAAACAACTGATGAGCTTGAAGCTGAAAAGAGAAGCCGCGAACAGGTTATGCAAGAACTAGATGATTTTCAGCAAGAAGCAAACAAAAAGAAGAAAGAACTTGCCAAATACTTAAAAGAGATTGCTCAATGTGAAAAGAAGATTGCTGAGAGAAGTAGTAGACTTGACAGAAGTAAACCAGAGCTGCTGAAACTGAAAGAGGAAATGTCTCGAATAAATTCAAAAATCAAGAAAAGTAAGACGGAGCTTGGTAGAAAAGAACAAGAACGGGGGAGACATAAGGAGGAAATTAAAAAGCTGCAGAAGGGCATCCAGGATTTGACCACACAACTAGAGGATTTACAGGAAAAGGGCCGAGACAGTGGTGAAAAATTACATTTAGACGATACTAAATTAAGGGAATATTTTAAAGTGAAGGAGGATGCTGGGATGAAAACTGCAAAGCTAAAAGATGAGAAAGAGGTTCTGGATCGGCAACAGCATGCTGATCTTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTGAGAAGTAGGGAGCGTGAACTGGATTCACAGAATGAGCAAATGCTGACAAGGCAGAGAAAAATTAAAGAAAACTCTGCAAAACACAAGCAGGAATCAAAAAACCTGAATAATGAATTGCATGTGATGCAGGAGAAACATCAGAATGCCAGACAAAAGTATGAAAATCTGAAGTCAAAAATTGATGAATTAGAAAAGCAATTACGTGAGCTGAAGGCCGACAGATATGAAAATGAGAGAGATTCCAGGTTGTCTCAGGCAGTGGAGACTCTCAAGCGCTTGTTTCAGGGTGTCCATGGTCGCATGACTGAACTCTGTAGGCCAACACAAAAGAAGTATAATCTTGCTGTCACTGTTGCCATGGGAAAATTTATGGATGCAGTCGTAGTTGAAGATGAACAAACAGGAAAGGAGTGTATCAAGGTGATATATGTTTTCGAATCTTTACGCTCTCGTAGAGTGTTTACACTGCTTGTTGAGATAAAGTGTGTGCACTCCCCGCAAAGAGAGAGAGAGAGAGAGCCACGATGGACTCCGACGAGGGAAAATGAGAAAGGTCCAGGCCTCGACGACGGCGCTAAGTCGTCGTTGCTCGCTCTAGGAGAGAAGTCACTTCGGTTCGACGAGGCAAGCTATTTGTTTTGGGATGAATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000819 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008278 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

640

Amino Acids

74.57

Weight (kDa)

8.97

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	9 - 357	2.3e-12	AAA ATPase domain
SMC_N	PF02463	10 - 618	1.3e-20	RecF/RecN/SMC N terminal domain
AAA_29	PF13555	11 - 55	1.8e-08	P-loop containing region of AAA domain
AAA_23	PF13476	12 - 293	3e-11	AAA domain
AAA_21	PF13304	33 - 61	6.6e-08	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	517 - 563	1.9e-08	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	774
AciI	CCGC	7 cut(s)	34, 250, 330, 343, 608, 772, 1763
AclWI	GGATC	2 cut(s)	292, 1212
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	5 cut(s)	49, 402, 952, 1240, 1631
AcuI	CTGAAG	3 cut(s)	582, 1454, 1496
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	1541
AfiI	CCNNNNNNNGG	3 cut(s)	37, 202, 778
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	8 cut(s)	55, 202, 685, 755, 957, 1229, 1259, 1655
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	6 cut(s)	18, 36, 72, 1047, 1508, 1822
Alw21I	GWGCWC	3 cut(s)	45, 519, 1758
Alw26I	GTCTC	6 cut(s)	519, 948, 1003, 1086, 1521, 1523
Alw44I	GTGCAC	1 cut(s)	1754
AlwI	GGATC	2 cut(s)	292, 1212
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	1541
ApaLI	GTGCAC	1 cut(s)	1754
ApeKI	GCWGC	3 cut(s)	572, 919, 1033
ApoI	RAATTY	5 cut(s)	49, 402, 952, 1240, 1631
Asp700I	GAANNNNTTC	2 cut(s)	952, 1254
AspLEI	GCGC	2 cut(s)	1542, 1841
AspS9I	GGNCC	8 cut(s)	67, 83, 113, 192, 205, 312, 1087, 1820
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	452, 1112, 1699
AsuII	TTCGAA	1 cut(s)	1701
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	3 cut(s)	192, 205, 1820
AxyI	CCTNAGG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	1758
BanII	GRGCYC	2 cut(s)	45, 519
Bbv12I	GWGCWC	3 cut(s)	45, 519, 1758
BbvI	GCAGC	3 cut(s)	584, 906, 1020
BccI	CCATC	2 cut(s)	323, 1785
BceAI	ACGGC	3 cut(s)	117, 367, 1852
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	6 cut(s)	20, 38, 74, 1049, 1510, 1824
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	6 cut(s)	519, 948, 1003, 1086, 1521, 1523
BfaI	CTAG	5 cut(s)	321, 407, 794, 1067, 1862
BfmI	CTRYAG	2 cut(s)	1034, 1579
BfoI	RGCGCY	2 cut(s)	1543, 1842
BfrI	CTTAAG	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	6 cut(s)	250, 331, 573, 772, 920, 1034
BlsI	GCNGC	6 cut(s)	251, 332, 574, 773, 921, 1035
Bme1390I	CCNGG	7 cut(s)	20, 38, 65, 74, 1049, 1510, 1824
Bme18I	GGWCC	3 cut(s)	192, 205, 1820
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	8 cut(s)	67, 83, 113, 192, 205, 312, 1087, 1820
BmiI	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
BmrFI	CCNGG	7 cut(s)	20, 38, 65, 74, 1049, 1510, 1824
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	4 cut(s)	1053, 1147, 1380, 1630
BmuI	ACTGGG	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	1701
BpuEI	CTTGAG	3 cut(s)	503, 512, 1520
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	1469
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	9 cut(s)	18, 19, 64, 163, 187, 219, 397, 1558, 1623
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 202, 778
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	196, 301, 487, 1290
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	6 cut(s)	20, 38, 74, 1049, 1510, 1824
BseDI	CCNNGG	9 cut(s)	18, 19, 64, 163, 187, 219, 397, 1558, 1623
BseGI	GGATG	5 cut(s)	1044, 1162, 1170, 1645, 1915
BseLI	CCNNNNNNNGG	3 cut(s)	37, 202, 778
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	5 cut(s)	285, 516, 636, 873, 1532
BseNI	ACTGG	4 cut(s)	196, 301, 487, 1290
BseSI	GKGCMC	1 cut(s)	1758
BseXI	GCAGC	3 cut(s)	584, 906, 1020
BseYI	CCCAGC	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	774
BsiHKAI	GWGCWC	3 cut(s)	45, 519, 1758
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	64, 126, 177, 327
BslFI	GGGAC	2 cut(s)	178, 379
BslI	CCNNNNNNNGG	3 cut(s)	37, 202, 778
BsmAI	GTCTC	6 cut(s)	519, 948, 1003, 1086, 1521, 1523
BsmFI	GGGAC	2 cut(s)	178, 379
BsmI	GAATGC	1 cut(s)	1414
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	1701
Bsp1286I	GDGCHC	3 cut(s)	45, 519, 1758
Bsp143I	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
Bsp19I	CCATGG	3 cut(s)	219, 1558, 1623
BspACI	CCGC	7 cut(s)	34, 250, 330, 343, 608, 772, 1763
BspCNI	CTCAG	5 cut(s)	286, 515, 637, 874, 1531
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
BspMAI	CTGCAG	1 cut(s)	1038
BspPI	GGATC	2 cut(s)	292, 1212
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	1701
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	196, 301, 487, 1290
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	9 cut(s)	18, 19, 64, 163, 187, 219, 397, 1558, 1623
BssMI	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	5 cut(s)	163, 219, 397, 1558, 1623
Bst2UI	CCWGG	6 cut(s)	20, 38, 74, 1049, 1510, 1824
Bst4CI	ACNGT	4 cut(s)	230, 1097, 1263, 1618
Bst6I	CTCTTC	3 cut(s)	230, 540, 680
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	1390
BstBAI	YACGTR	1 cut(s)	1469
BstBI	TTCGAA	1 cut(s)	1701
BstC8I	GCNNGC	7 cut(s)	182, 282, 418, 662, 1218, 1857, 1894
BstDEI	CTNAG	7 cut(s)	294, 471, 502, 645, 882, 1518, 1842
BstDSI	CCRYGG	4 cut(s)	187, 219, 1558, 1623
BstF5I	GGATG	5 cut(s)	1044, 1162, 1170, 1645, 1915
BstFNI	CGCG	1 cut(s)	774
BstH2I	RGCGCY	2 cut(s)	1543, 1842
BstHHI	GCGC	2 cut(s)	1542, 1841
BstKTI	GATC	6 cut(s)	15, 213, 300, 501, 1207, 1225
BstMAI	GTCTC	6 cut(s)	519, 948, 1003, 1086, 1521, 1523
BstMBI	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
BstMWI	GCNNNNNNNGC	7 cut(s)	120, 246, 330, 351, 1315, 1390, 1762
BstNI	CCWGG	6 cut(s)	20, 38, 74, 1049, 1510, 1824
BstNSI	RCATGY	2 cut(s)	1220, 1388
BstSCI	CCNGG	7 cut(s)	18, 36, 63, 72, 1047, 1508, 1822
BstSFI	CTRYAG	2 cut(s)	1034, 1579
BstSLI	GKGCMC	1 cut(s)	1758
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	3 cut(s)	584, 906, 1020
BstX2I	RGATCY	2 cut(s)	297, 498
BstXI	CCANNNNNNTGG	2 cut(s)	142, 188
BstYI	RGATCY	2 cut(s)	297, 498
Bsu36I	CCTNAGG	1 cut(s)	471
BtgI	CCRYGG	4 cut(s)	187, 219, 1558, 1623
BtsCI	GGATG	5 cut(s)	1044, 1162, 1170, 1645, 1915
BtsI	GCAGTG	3 cut(s)	340, 1530, 1730
BtsIMutI	CAGTG	7 cut(s)	235, 340, 480, 1102, 1530, 1614, 1730
Cac8I	GCNNGC	7 cut(s)	182, 282, 418, 662, 1218, 1857, 1894
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	2 cut(s)	1542, 1841
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	8 cut(s)	67, 83, 113, 192, 205, 312, 1087, 1820
CseI	GACGC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	7 cut(s)	142, 220, 1217, 1385, 1559, 1567, 1624
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	7 cut(s)	294, 471, 502, 645, 882, 1518, 1842
DpnI	GATC	6 cut(s)	14, 212, 299, 500, 1206, 1224
DpnII	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
DraI	TTTAAA	1 cut(s)	1144
DriI	GACNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	3 cut(s)	230, 540, 680
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	3 cut(s)	230, 540, 680
Ecl136II	GAGCTC	2 cut(s)	43, 517
Eco130I	CCWWGG	5 cut(s)	163, 219, 397, 1558, 1623
Eco147I	AGGCCT	1 cut(s)	1827
Eco24I	GRGCYC	2 cut(s)	45, 519
Eco47I	GGWCC	3 cut(s)	192, 205, 1820
Eco47III	AGCGCT	1 cut(s)	1541
Eco53kI	GAGCTC	2 cut(s)	43, 517
Eco57I	CTGAAG	3 cut(s)	582, 1454, 1496
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	43, 517
EcoO109I	RGGNCCY	2 cut(s)	192, 205
EcoRI	GAATTC	1 cut(s)	402
EcoRII	CCWGG	6 cut(s)	18, 36, 72, 1047, 1508, 1822
EcoT14I	CCWWGG	5 cut(s)	163, 219, 397, 1558, 1623
EcoT38I	GRGCYC	2 cut(s)	45, 519
ErhI	CCWWGG	5 cut(s)	163, 219, 397, 1558, 1623
FaeI	CATG	7 cut(s)	145, 223, 1220, 1388, 1562, 1570, 1627
FalI	AAGNNNNNCTT	4 cut(s)	561, 593, 1239, 1271
FaqI	GGGAC	2 cut(s)	178, 379
FatI	CATG	7 cut(s)	141, 219, 1216, 1384, 1558, 1566, 1623
FauI	CCCGC	1 cut(s)	1770
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	6 cut(s)	250, 331, 573, 772, 920, 1034
FokI	GGATG	4 cut(s)	1031, 1169, 1177, 1652
FriOI	GRGCYC	2 cut(s)	45, 519
Fsp4HI	GCNGC	6 cut(s)	250, 331, 573, 772, 920, 1034
FspBI	CTAG	5 cut(s)	321, 407, 794, 1067, 1862
GlaI	GCGC	2 cut(s)	1541, 1840
GluI	GCNGC	6 cut(s)	250, 331, 573, 772, 920, 1034
GsaI	CCCAGC	1 cut(s)	1164
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	2 cut(s)	1543, 1842
HapII	CCGG	4 cut(s)	64, 126, 177, 327
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	1542, 1841
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	145, 223, 1220, 1388, 1562, 1570, 1627
Hin6I	GCGC	2 cut(s)	1540, 1839
HinP1I	GCGC	2 cut(s)	1540, 1839
HindIII	AAGCTT	3 cut(s)	154, 372, 386
HinfI	GANTC	9 cut(s)	290, 449, 1289, 1358, 1505, 1531, 1703, 1795, 1913
HpaII	CCGG	4 cut(s)	64, 126, 177, 327
HphI	GGTGA	3 cut(s)	452, 1112, 1699
Hpy166II	GTNNAC	7 cut(s)	274, 306, 896, 911, 1283, 1728, 1756
Hpy188I	TCNGA	7 cut(s)	94, 295, 511, 588, 1407, 1434, 1800
Hpy188III	TCNNGA	7 cut(s)	46, 172, 520, 945, 964, 1202, 1226
Hpy8I	GTNNAC	7 cut(s)	274, 306, 896, 911, 1283, 1728, 1756
Hpy99I	CGWCG	5 cut(s)	1804, 1835, 1838, 1852, 1889
HpyAV	CCTTC	5 cut(s)	97, 196, 1033, 1144, 1471
HpyCH4III	ACNGT	4 cut(s)	230, 1097, 1263, 1618
HpyCH4IV	ACGT	1 cut(s)	1468
HpyCH4V	TGCA	9 cut(s)	664, 787, 1036, 1175, 1343, 1384, 1393, 1643, 1756
HpyF10VI	GCNNNNNNNGC	7 cut(s)	120, 246, 330, 351, 1315, 1390, 1762
HpyF3I	CTNAG	7 cut(s)	294, 471, 502, 645, 882, 1518, 1842
HpySE526I	ACGT	1 cut(s)	1468
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	7 cut(s)	145, 223, 1220, 1388, 1562, 1570, 1627
HspAI	GCGC	2 cut(s)	1540, 1839
KflI	GGGWCCC	1 cut(s)	192
Kzo9I	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	6 cut(s)	40, 128, 189, 329, 979, 1276
Lsp1109I	GCAGC	3 cut(s)	584, 906, 1020
LweI	GCATC	4 cut(s)	1053, 1147, 1380, 1630
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	5 cut(s)	321, 407, 794, 1067, 1862
MaeII	ACGT	1 cut(s)	1468
MaeIII	GTNAC	2 cut(s)	1612, 1872
MalI	GATC	6 cut(s)	14, 212, 299, 500, 1206, 1224
MboI	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
MflI	RGATCY	2 cut(s)	297, 498
MhlI	GDGCHC	3 cut(s)	45, 519, 1758
MlyI	GAGTC	4 cut(s)	299, 458, 1525, 1789
MmeI	TCCRAC	3 cut(s)	117, 159, 1823
MroXI	GAANNNNTTC	2 cut(s)	952, 1254
MseI	TTAA	8 cut(s)	390, 714, 848, 1026, 1130, 1143, 1329, 1921
MslI	CAYNNNNRTG	1 cut(s)	1407
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	4 cut(s)	64, 126, 177, 327
MspR9I	CCNGG	7 cut(s)	20, 38, 65, 74, 1049, 1510, 1824
Mva1269I	GAATGC	1 cut(s)	1414
MvaI	CCWGG	6 cut(s)	20, 38, 74, 1049, 1510, 1824
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	7 cut(s)	120, 246, 330, 351, 1315, 1390, 1762
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	3 cut(s)	219, 1558, 1623
NdeII	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
NlaIII	CATG	7 cut(s)	145, 223, 1220, 1388, 1562, 1570, 1627
NlaIV	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
NmeAIII	GCCGAG	1 cut(s)	1115
NmuCI	GTSAC	2 cut(s)	1612, 1872
NspI	RCATGY	2 cut(s)	1220, 1388
NspV	TTCGAA	1 cut(s)	1701
PaeI	GCATGC	1 cut(s)	1220
PaeR7I	CTCGAG	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	1827
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	1414
PdmI	GAANNNNTTC	2 cut(s)	952, 1254
PfeI	GAWTC	5 cut(s)	1289, 1358, 1505, 1703, 1913
PflMI	CCANNNNNTGG	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	1047
PkrI	GCNGC	6 cut(s)	251, 332, 574, 773, 921, 1035
PleI	GAGTC	4 cut(s)	298, 457, 1525, 1789
PpsI	GAGTC	4 cut(s)	298, 457, 1525, 1789
Ppu21I	YACGTR	1 cut(s)	1469
PpuMI	RGGWCCY	2 cut(s)	192, 205
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	2 cut(s)	45, 519
Psp5II	RGGWCCY	2 cut(s)	192, 205
Psp6I	CCWGG	6 cut(s)	18, 36, 72, 1047, 1508, 1822
PspFI	CCCAGC	1 cut(s)	1160
PspGI	CCWGG	6 cut(s)	18, 36, 72, 1047, 1508, 1822
PspN4I	GGNNCC	6 cut(s)	68, 85, 115, 124, 193, 194
PspPI	GGNCC	8 cut(s)	67, 83, 113, 192, 205, 312, 1087, 1820
PspPPI	RGGWCCY	2 cut(s)	192, 205
PstI	CTGCAG	1 cut(s)	1038
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	2 cut(s)	297, 498
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	1407
SacI	GAGCTC	2 cut(s)	45, 519
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	8 cut(s)	390, 714, 848, 1026, 1130, 1143, 1329, 1921
SatI	GCNGC	6 cut(s)	250, 331, 573, 772, 920, 1034
Sau3AI	GATC	6 cut(s)	12, 210, 297, 498, 1204, 1222
Sau96I	GGNCC	8 cut(s)	67, 83, 113, 192, 205, 312, 1087, 1820
SchI	GAGTC	4 cut(s)	299, 458, 1525, 1789
ScrFI	CCNGG	7 cut(s)	20, 38, 65, 74, 1049, 1510, 1824
SduI	GDGCHC	3 cut(s)	45, 519, 1758
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	1053, 1147, 1380, 1630
SfcI	CTRYAG	2 cut(s)	1034, 1579
Sfr274I	CTCGAG	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	1701
SinI	GGWCC	3 cut(s)	192, 205, 1820
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	1407
SmlI	CTYRAG	5 cut(s)	44, 389, 491, 518, 1535
SmoI	CTYRAG	5 cut(s)	44, 389, 491, 518, 1535
SphI	GCATGC	1 cut(s)	1220
SseBI	AGGCCT	1 cut(s)	1827
SsiI	CCGC	7 cut(s)	34, 250, 330, 343, 608, 772, 1763
SspI	AATATT	1 cut(s)	1139
SspMI	CTAG	5 cut(s)	321, 407, 794, 1067, 1862
SstI	GAGCTC	2 cut(s)	45, 519
StuI	AGGCCT	1 cut(s)	1827
StyD4I	CCNGG	7 cut(s)	18, 36, 63, 72, 1047, 1508, 1822
StyI	CCWWGG	5 cut(s)	163, 219, 397, 1558, 1623
TaaI	ACNGT	4 cut(s)	230, 1097, 1263, 1618
TaiI	ACGT	1 cut(s)	1471
TaqI	TCGA	6 cut(s)	45, 447, 946, 1701, 1830, 1884
TauI	GCSGC	3 cut(s)	252, 333, 774
TfiI	GAWTC	5 cut(s)	1289, 1358, 1505, 1703, 1913
Tru1I	TTAA	8 cut(s)	390, 714, 848, 1026, 1130, 1143, 1329, 1921
Tru9I	TTAA	8 cut(s)	390, 714, 848, 1026, 1130, 1143, 1329, 1921
TscAI	CASTG	7 cut(s)	235, 340, 487, 1102, 1530, 1621, 1737
TseFI	GTSAC	2 cut(s)	1612, 1872
TseI	GCWGC	3 cut(s)	572, 919, 1033
Tsp45I	GTSAC	2 cut(s)	1612, 1872
TspDTI	ATGAA	9 cut(s)	546, 555, 684, 1181, 1392, 1440, 1464, 1506, 1674
TspGWI	ACGGA	2 cut(s)	176, 992
TspRI	CASTG	7 cut(s)	235, 340, 487, 1102, 1530, 1621, 1737
Van91I	CCANNNNNTGG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	389
VneI	GTGCAC	1 cut(s)	1754
VpaK11BI	GGWCC	3 cut(s)	192, 205, 1820
XapI	RAATTY	5 cut(s)	49, 402, 952, 1240, 1631
XceI	RCATGY	2 cut(s)	1220, 1388
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	2 cut(s)	952, 1254
XspI	CTAG	5 cut(s)	321, 407, 794, 1067, 1862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.