Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

53841461 .. 53851899

Gene Structure 10439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3657 bp

ATGCCGTCCCTGATCTCCCAGGGCAAAATCCACCGCCTGGAGCTCGAGAATTTCAAGTCCTACCGGGGCCACCAGGTCATCGGCCCCTTCTCCGACTTCACGGCGATTATCGGCCCCAATGGCTCCGGCAAGTCCAACCTCATGGACGCCATAAGCTTCGTCCTTGGGGTCAAGACCGGCCAGCTCCGTGGGTCCCAGTTGAAGGACCTGATCTACGCCATGGACGACAGTGAGAAGAGCGAGAAAGGCCGCAGGGCGTTTGTGAGCTTGGTTTACCAGCTTGCGAATGAGTCTGAGATCCAGTTCACAAGGGCCATCACTAGCTCCGGCGGCAGTGAGTACCGCATAGACGGCAAGTCAGTATCGTGGGAAGCTTATAATGAGAAGCTTAAGTCCCTTGGAATTCTAGTCAAGGCTCGCAATTTTCTTGTCTTTCAGGGTGATGTTGAGTCCATTGCCTCTAAAAATCCTAAGGAACTCACTGGACTGCTTGAGCAGATCTCAGGGTCTGATGAGCTCAAGAGAGACTATGAAAAGTATGAAGAAGAGAAAGGCATAGCTGAAGAAAAAGCAGCCCTTGTTTATCAGAAAAAAAGAACCATAGTAGCAGAGAGGAAGCAAAAGAAAGAGCAAAAGGAAGAAGCTGAGAAGCACATTCGCCTGCAAATTGAACTGAAATCTTTGAAGAGAGAACACTTTTTGTGGCAGTTGTTTAACATAGAAAAAGATATAACGAAAACAACTGATGAGCTTGAAGCTGAAAAGAGAAGCCGCGAACAGGTTATGCAAGAACTAGATGATTTTCAGCAAGAAGCAAACAAAAAGAAGAAAGAACTTGCCAAATACTTAAAAGAGATTGCTCAATGTGAAAAGAAGATTGCTGAGAGAAGTAGTAGACTTGACAGAAGTAAACCAGAGCTGCTGAAACTGAAAGAGGAAATGTCGCGAATAAATTCAAAAATCAAGAAAAGTAAGACGGAGCTTGGTAGAAAAGAACAAGAACGGGGGAGACATAAGGAAGAAATTAAAAAGCTGCAGAAGGGCATCCAGGATTTGACCACACAACTAGAGGATTTACAGGAAAAAGGCCGAGACAGTGGTGAAAAATTACATTTAGACGATACTAAATTAAGGGAATATTTTAAAGTGAAGGAGGATGCTGGGATGAAAACTGCAAAGCTAAAAGATGAGAAAGAGGTTCTGGATCGGCAACAGCATGCTGATCTTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTGAGAAGTAGGGAGCGTGAACTGGATTCACAGAATGAGCAAATGCTGACAAGGCAGAGAAAAATTAAGGAAAACTCTGCAAAACACAAGCAGGAATCTAAAAATCTGAATAATGAATTGCATGTGATGCAGGAGAAACATCAGAATGCCAGACAAAAGTATGAAAATCTGAAGTCAAAAATTGATGAATTAGAAAAGCAATTACGTGAACTGAAGGCTGACAGATATGAAAATGAGAGAGATTCCAGGTTGTCTCAGGCAGTGGAGACGCTCAAGCGCTTGTTTCAGGGTGTCCATGGTCGCATGACTGAACTCTGTAGGCCAACACAAAAGAAGTATAATCTTGCTGTCACTGTTGCCATGGGGAAATTTATGGATGCAGTCGTAGTTGAAGATGAACAAACAGGAAAGGAGTGTATCAAGTATTTGAAAGAACAAAGGCTTCCTCCCCAGACATTCATACCTCTCCAATCTGTTCGTGTAAAGCAAGTAATGGAGAGATTGCGTAACTTGGGTGGTACTGCAAAGCTGGTTTTTGATGTTGTCCAATTTGATCATGCCTTGGAGAAGGCTATTCTTTTTGCGGTTGGCAATACACTTGTTTGTGACGAACTTGATGAGGCTAAGCGCCTAAGCTGGAGTGGTGAGAGGTTCAAAGTTGTAACTGTTGATGGAATTATGCTGTCAAAATCTGGCACAATGACTGGGGGTACCAGTGGAGGAATGGAAGCTAGATCAAAACAATGGGATGATAAAAAAGTTGAAGGACTGAAGAAGAAGAAAGAACAGTTTGAGTTGGAGCTAGAAGAGCTTGGGTCAATTAGAGAGATGCAGCTAAAAGAGTCTGAAACAGCTGGCAGAATTAGTGGGCTTGACAAGAAAATCCAATATGCAGATATTGAGAAGGAAAGCATAAAGGACAAACTTGCAAATTTGGTCCACGAGAGGCAGAATATAAAAGAAGAGATTGATCGTATCAGTCCTGATCTTCTGAAGCTAAAACAAGCTGTAGATAAGCGGAGCACAGAAATCAATAAGCTTGAGAAGAGGATAAATGATATTGTTGACAGACTCTACAAAAGCTTTAGTAAATCTGTTGGGGTAGATAACATTCGCGAGTATGAAGAAAAACAACTCAAGGCTACCCAATCTATGGCTGAAGAGAGGCTTAGTTTGAGTAGCCAGCTATCAAAACTGAAATACCAGCTAGAGTATGAGCAAAATCGGGACATGGATACACGAATTGAAGAACTCCAATCATTTATTAGTAACCTACTAAAAGATTTAGAACGGGTTCAAAAGAAAGAGGCCGAAGCCAACTCTGCAGCAGAAAAAGCCTCCGATGAGATTCTTCAGTTGAAGGAAGAAGCACAAGAATGGAAGTCCAATTCGGAAGGGTGTGAAAAGGAAATTCAAGAATGGAACAAGCGTGGTTCTACTGCAACATCAAATGTATCCAAACTTAATCGACAGATAAATTCTAAGGAATCGCAGATTGAGCAGCTAACATCTCGAAAGCAGGAGATAGTAGAAAATTGTGAACTACAGCAAATAAGCCTTCCGATCATTTCAGATCCAATGGAGACTGAATCCTCCACGACAGGCCCAGTATTTGATTTTGATGAGTTAGATGAGTCTCTATTGAGGAATAGGAGGCCTTCTGAGCGGGAGAAAGTTGAGTTAGACTTTAAGAAACAAATGGATGCCAAGTTATCAGAAATTGAAAGAACAGCTCCCAATTTGAAGGCCATGGACCAATATGAGGCTCTACAAGAAAAGGAAAGAGATGTAACTGGAGAGTTTGAAGTGGCCAGAAAAGAACAGAAGCAAAAGGCTGATCTGTTTAACTCGGTTAAGCAAAGGAGGTATGAGTTGTTTATGGATGCCTTCAACCATATTTCCAGTAATATTGATAAGATATACAAACAACTGACGAAGAGCAATACACATCCCCTGGGTGGGACGGCATATTTGAATTTAGAAAATGAAGATGATCCCTTTTTACATGGCGTCAAGTACACTACCATGCCCCCAACAAAGCGCTTTCGAGATATGGAACAATTATCTGGCGGAGAGAAAACTGTTGCAGCATTAGCATTACTGTTTTCCATACACAGCTATAGGCCTTCGCCTTTTTTCATACTGGATGAAGTTGATGCTGCACTGGATAACTTAAATGTAGCAAAGGTTGCTCGATTCATCCGTTCAAAGTCATGCCAAGGAGCCAGGGTTAATGTGGATACTGAAGGAGGCAATGGTTTTCAAAGTATTGTAATATCTCTAAAAGATAGCTTCTATGACAAGGCTGAAGCTCTGGTTGGGGTTTTCAGGGACGCTGACATGAGTTGTTCCAAAACACTGTCATTTGACTTGACTAAATTTCGGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000819 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008278 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1218

Amino Acids

140.6

Weight (kDa)

7.04

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_15	PF13175	9 - 357	3.1e-13	AAA ATPase domain
SMC_N	PF02463	10 - 1199	8.9e-43	RecF/RecN/SMC N terminal domain
AAA_29	PF13555	11 - 55	3.9e-08	P-loop containing region of AAA domain
AAA_23	PF13476	12 - 218	5.3e-16	AAA domain
AAA_21	PF13304	33 - 61	1.5e-07	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_hinge	PF06470	517 - 632	1.1e-26	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc65I	GGTACC	1 cut(s)	1973
AccB1I	GGYRCC	1 cut(s)	1973
AccB7I	CCANNNNNTGG	2 cut(s)	37, 2416
AccBSI	CCGCTC	1 cut(s)	2929
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	3 cut(s)	774, 946, 2379
AciI	CCGC	9 cut(s)	34, 250, 330, 343, 772, 1847, 2281, 2929, 3333
AclWI	GGATC	4 cut(s)	292, 1212, 2831, 3251
AcoI	YGGCCR	2 cut(s)	178, 3072
AcuI	CTGAAG	9 cut(s)	582, 1454, 1496, 2054, 2276, 2442, 2600, 3528, 3591
AcyI	GRCGYC	2 cut(s)	147, 3273
AfaI	GTAC	4 cut(s)	341, 1783, 1975, 3281
AfeI	AGCGCT	2 cut(s)	1541, 3305
AfiI	CCNNNNNNNGG	7 cut(s)	37, 202, 778, 2416, 3025, 3221, 3222
AflII	CTTAAG	1 cut(s)	389
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	7 cut(s)	18, 36, 72, 1047, 1508, 3216, 3488
AjuI	GAANNNNNNNTTGG	2 cut(s)	3564, 3596
Alw21I	GWGCWC	3 cut(s)	45, 519, 2288
Alw26I	GTCTC	7 cut(s)	519, 1003, 1086, 1521, 1523, 2840, 2904
AlwI	GGATC	4 cut(s)	292, 1212, 2831, 3251
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	44
Aor51HI	AGCGCT	2 cut(s)	1541, 3305
ApeKI	GCWGC	8 cut(s)	572, 919, 1033, 2095, 2588, 2764, 3350, 3422
ArsI	GACNNNNNNTTYG	2 cut(s)	3217, 3249
Asp700I	GAANNNNTTC	3 cut(s)	952, 1254, 2556
Asp718I	GGTACC	1 cut(s)	1973
AspLEI	GCGC	3 cut(s)	1542, 1893, 3306
AspS9I	GGNCC	9 cut(s)	67, 83, 113, 192, 205, 312, 2200, 2867, 3016
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	452, 1112, 1919
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	4 cut(s)	192, 205, 2200, 3016
AxyI	CCTNAGG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	3074
BanI	GGYRCC	1 cut(s)	1973
BanII	GRGCYC	2 cut(s)	45, 519
BauI	CACGAG	1 cut(s)	2204
Bbv12I	GWGCWC	3 cut(s)	45, 519, 2288
BbvI	GCAGC	8 cut(s)	584, 906, 1020, 2107, 2600, 2776, 3362, 3409
BccI	CCATC	2 cut(s)	323, 1928
BceAI	ACGGC	3 cut(s)	117, 367, 3243
BciT130I	CCWGG	7 cut(s)	20, 38, 74, 1049, 1510, 3218, 3490
BciVI	GTATCC	3 cut(s)	2491, 2728, 3496
BclI	TGATCA	1 cut(s)	1816
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	7 cut(s)	519, 1003, 1086, 1521, 1523, 2840, 2904
BfaI	CTAG	7 cut(s)	321, 407, 794, 1067, 1995, 2066, 2471
BfmI	CTRYAG	6 cut(s)	1034, 1579, 2271, 2586, 2807, 3382
BfoI	RGCGCY	3 cut(s)	1543, 1894, 3307
BfrI	CTTAAG	1 cut(s)	389
BfuI	GTATCC	3 cut(s)	2491, 2728, 3496
BglI	GCCNNNNNGGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	498
BlpI	GCTNAGC	1 cut(s)	1887
Bme1390I	CCNGG	8 cut(s)	20, 38, 65, 74, 1049, 1510, 3218, 3490
Bme18I	GGWCC	4 cut(s)	192, 205, 2200, 3016
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	9 cut(s)	67, 83, 113, 192, 205, 312, 2200, 2867, 3016
BmiI	GGNNCC	8 cut(s)	68, 85, 115, 124, 193, 194, 1975, 3487
BmrFI	CCNGG	8 cut(s)	20, 38, 65, 74, 1049, 1510, 3218, 3490
BmrI	ACTGGG	3 cut(s)	190, 1977, 2864
BmsI	GCATC	8 cut(s)	1053, 1147, 1380, 1630, 2082, 2956, 3136, 3409
BmuI	ACTGGG	3 cut(s)	190, 1977, 2864
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	3 cut(s)	59, 1921, 3078
Bpu10I	CCTNAGC	1 cut(s)	1895
Bpu1102I	GCTNAGC	1 cut(s)	1887
BpuEI	CTTGAG	5 cut(s)	503, 512, 1520, 2324, 2384
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	1469
BsaHI	GRCGYC	2 cut(s)	147, 3273
BsaXI	ACNNNNNCTCC	2 cut(s)	3477, 3507
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 202, 778, 2416, 3025, 3221, 3222
Bse118I	RCCGGY	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	2 cut(s)	453, 3523
BseBI	CCWGG	7 cut(s)	20, 38, 74, 1049, 1510, 3218, 3490
BseLI	CCNNNNNNNGG	7 cut(s)	37, 202, 778, 2416, 3025, 3221, 3222
BseMI	GCAATG	2 cut(s)	453, 3523
BseMII	CTCAG	6 cut(s)	285, 516, 636, 873, 1532, 2916
BseXI	GCAGC	8 cut(s)	584, 906, 1020, 2107, 2600, 2776, 3362, 3409
BseYI	CCCAGC	1 cut(s)	1160
BsgI	GTGCAG	1 cut(s)	3408
Bsh1236I	CGCG	3 cut(s)	774, 946, 2379
BshNI	GGYRCC	1 cut(s)	1973
BsiHKAI	GWGCWC	3 cut(s)	45, 519, 2288
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	64, 126, 177, 327
BslFI	GGGAC	5 cut(s)	178, 379, 2504, 3238, 3608
BslI	CCNNNNNNNGG	7 cut(s)	37, 202, 778, 2416, 3025, 3221, 3222
BsmAI	GTCTC	7 cut(s)	519, 1003, 1086, 1521, 1523, 2840, 2904
BsmBI	CGTCTC	1 cut(s)	1523
BsmFI	GGGAC	5 cut(s)	178, 379, 2504, 3238, 3608
BsmI	GAATGC	1 cut(s)	1414
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	3 cut(s)	45, 519, 2288
Bsp1720I	GCTNAGC	1 cut(s)	1887
Bsp19I	CCATGG	4 cut(s)	219, 1558, 1623, 3012
Bsp68I	TCGCGA	2 cut(s)	946, 2379
BspACI	CCGC	9 cut(s)	34, 250, 330, 343, 772, 1847, 2281, 2929, 3333
BspCNI	CTCAG	6 cut(s)	286, 515, 637, 874, 1531, 2917
BspFNI	CGCG	3 cut(s)	774, 946, 2379
BspLI	GGNNCC	8 cut(s)	68, 85, 115, 124, 193, 194, 1975, 3487
BspMAI	CTGCAG	2 cut(s)	1038, 2590
BspPI	GGATC	4 cut(s)	292, 1212, 2831, 3251
BspQI	GCTCTTC	3 cut(s)	230, 2064, 3194
BspT107I	GGYRCC	1 cut(s)	1973
BspTI	CTTAAG	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	2929
BsrDI	GCAATG	2 cut(s)	453, 3523
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssNI	GRCGYC	2 cut(s)	147, 3273
BssSI	CACGAG	1 cut(s)	2204
BssT1I	CCWWGG	8 cut(s)	163, 219, 397, 1558, 1623, 1824, 3012, 3481
Bst2BI	CACGAG	1 cut(s)	2204
Bst2UI	CCWGG	7 cut(s)	20, 38, 74, 1049, 1510, 3218, 3490
Bst4CI	ACNGT	9 cut(s)	230, 1097, 1263, 1618, 1930, 2052, 3346, 3366, 3624
Bst6I	CTCTTC	8 cut(s)	230, 540, 680, 2064, 2220, 2303, 2418, 3194
BstACI	GRCGYC	2 cut(s)	147, 3273
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	2 cut(s)	1390, 3452
BstBAI	YACGTR	1 cut(s)	1469
BstC8I	GCNNGC	7 cut(s)	182, 282, 418, 662, 1218, 2119, 2447
BstDSI	CCRYGG	5 cut(s)	187, 219, 1558, 1623, 3012
BstFNI	CGCG	3 cut(s)	774, 946, 2379
BstH2I	RGCGCY	3 cut(s)	1543, 1894, 3307
BstHHI	GCGC	3 cut(s)	1542, 1893, 3306
BstMAI	GTCTC	7 cut(s)	519, 1003, 1086, 1521, 1523, 2840, 2904
BstNI	CCWGG	7 cut(s)	20, 38, 74, 1049, 1510, 3218, 3490
BstNSI	RCATGY	2 cut(s)	1220, 1388
BstSCI	CCNGG	8 cut(s)	18, 36, 63, 72, 1047, 1508, 3216, 3488
BstSFI	CTRYAG	6 cut(s)	1034, 1579, 2271, 2586, 2807, 3382
BstUI	CGCG	3 cut(s)	774, 946, 2379
BstV1I	GCAGC	8 cut(s)	584, 906, 1020, 2107, 2600, 2776, 3362, 3409
BstX2I	RGATCY	3 cut(s)	297, 498, 2836
BstXI	CCANNNNNNTGG	2 cut(s)	142, 188
BstYI	RGATCY	3 cut(s)	297, 498, 2836
Bsu36I	CCTNAGG	1 cut(s)	471
BsuI	GTATCC	3 cut(s)	2491, 2728, 3496
BtgI	CCRYGG	5 cut(s)	187, 219, 1558, 1623, 3012
BtsI	GCAGTG	2 cut(s)	340, 1530
BtsIMutI	CAGTG	9 cut(s)	235, 340, 480, 1102, 1530, 1614, 1984, 3425, 3620
BtuMI	TCGCGA	2 cut(s)	946, 2379
Cac8I	GCNNGC	7 cut(s)	182, 282, 418, 662, 1218, 2119, 2447
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	3 cut(s)	1542, 1893, 3306
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	9 cut(s)	67, 83, 113, 192, 205, 312, 2200, 2867, 3016
CseI	GACGC	4 cut(s)	155, 1540, 3262, 3605
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	4 cut(s)	340, 1782, 1974, 3280
CviQI	GTAC	4 cut(s)	340, 1782, 1974, 3280
DraI	TTTAAA	1 cut(s)	1144
DriI	GACNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	178, 3072
Eam1104I	CTCTTC	8 cut(s)	230, 540, 680, 2064, 2220, 2303, 2418, 3194
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	8 cut(s)	230, 540, 680, 2064, 2220, 2303, 2418, 3194
EciI	GGCGGA	1 cut(s)	3348
Ecl136II	GAGCTC	2 cut(s)	43, 517
Eco130I	CCWWGG	8 cut(s)	163, 219, 397, 1558, 1623, 1824, 3012, 3481
Eco147I	AGGCCT	2 cut(s)	2920, 3388
Eco24I	GRGCYC	2 cut(s)	45, 519
Eco47I	GGWCC	4 cut(s)	192, 205, 2200, 3016
Eco47III	AGCGCT	2 cut(s)	1541, 3305
Eco53kI	GAGCTC	2 cut(s)	43, 517
Eco57I	CTGAAG	9 cut(s)	582, 1454, 1496, 2054, 2276, 2442, 2600, 3528, 3591
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	43, 517
EcoO109I	RGGNCCY	2 cut(s)	192, 205
EcoRI	GAATTC	1 cut(s)	402
EcoRII	CCWGG	7 cut(s)	18, 36, 72, 1047, 1508, 3216, 3488
EcoT14I	CCWWGG	8 cut(s)	163, 219, 397, 1558, 1623, 1824, 3012, 3481
EcoT38I	GRGCYC	2 cut(s)	45, 519
ErhI	CCWWGG	8 cut(s)	163, 219, 397, 1558, 1623, 1824, 3012, 3481
Esp3I	CGTCTC	1 cut(s)	1523
FalI	AAGNNNNNCTT	6 cut(s)	561, 593, 1239, 1271, 2415, 2447
FaqI	GGGAC	5 cut(s)	178, 379, 2504, 3238, 3608
FauI	CCCGC	1 cut(s)	2922
FbaI	TGATCA	1 cut(s)	1816
FblI	GTMKAC	1 cut(s)	895
FriOI	GRGCYC	2 cut(s)	45, 519
FspBI	CTAG	7 cut(s)	321, 407, 794, 1067, 1995, 2066, 2471
GlaI	GCGC	3 cut(s)	1541, 1892, 3305
GsaI	CCCAGC	1 cut(s)	1164
GsuI	CTGGAG	3 cut(s)	59, 1921, 3078
HaeII	RGCGCY	3 cut(s)	1543, 1894, 3307
HapII	CCGG	4 cut(s)	64, 126, 177, 327
HgaI	GACGC	4 cut(s)	155, 1540, 3262, 3605
HhaI	GCGC	3 cut(s)	1542, 1893, 3306
Hin1I	GRCGYC	2 cut(s)	147, 3273
Hin6I	GCGC	3 cut(s)	1540, 1891, 3304
HinP1I	GCGC	3 cut(s)	1540, 1891, 3304
HincII	GTYRAC	1 cut(s)	2329
HindII	GTYRAC	1 cut(s)	2329
HindIII	AAGCTT	5 cut(s)	154, 372, 386, 2300, 2344
HpaII	CCGG	4 cut(s)	64, 126, 177, 327
HphI	GGTGA	3 cut(s)	452, 1112, 1919
HpyCH4III	ACNGT	9 cut(s)	230, 1097, 1263, 1618, 1930, 2052, 3346, 3366, 3624
HpyCH4IV	ACGT	1 cut(s)	1468
HpySE526I	ACGT	1 cut(s)	1468
Hsp92I	GRCGYC	2 cut(s)	147, 3273
HspAI	GCGC	3 cut(s)	1540, 1891, 3304
KflI	GGGWCCC	1 cut(s)	192
KpnI	GGTACC	1 cut(s)	1977
Ksp22I	TGATCA	1 cut(s)	1816
LguI	GCTCTTC	3 cut(s)	230, 2064, 3194
Lsp1109I	GCAGC	8 cut(s)	584, 906, 1020, 2107, 2600, 2776, 3362, 3409
LweI	GCATC	8 cut(s)	1053, 1147, 1380, 1630, 2082, 2956, 3136, 3409
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	7 cut(s)	321, 407, 794, 1067, 1995, 2066, 2471
MaeII	ACGT	1 cut(s)	1468
MaeIII	GTNAC	6 cut(s)	1612, 1769, 1868, 1924, 2531, 3052
MbiI	CCGCTC	1 cut(s)	2929
MflI	RGATCY	3 cut(s)	297, 498, 2836
MhlI	GDGCHC	3 cut(s)	45, 519, 2288
MlsI	TGGCCA	1 cut(s)	3074
MluNI	TGGCCA	1 cut(s)	3074
MlyI	GAGTC	5 cut(s)	299, 458, 2114, 2328, 2906
MmeI	TCCRAC	3 cut(s)	117, 159, 2040
Mox20I	TGGCCA	1 cut(s)	3074
MroXI	GAANNNNTTC	3 cut(s)	952, 1254, 2556
MscI	TGGCCA	1 cut(s)	3074
MslI	CAYNNNNRTG	3 cut(s)	1407, 2638, 3287
Msp20I	TGGCCA	1 cut(s)	3074
MspA1I	CMGCKG	1 cut(s)	2117
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	4 cut(s)	64, 126, 177, 327
MspR9I	CCNGG	8 cut(s)	20, 38, 65, 74, 1049, 1510, 3218, 3490
Mva1269I	GAATGC	1 cut(s)	1414
MvaI	CCWGG	7 cut(s)	20, 38, 74, 1049, 1510, 3218, 3490
MvnI	CGCG	3 cut(s)	774, 946, 2379
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	4 cut(s)	219, 1558, 1623, 3012
NlaIV	GGNNCC	8 cut(s)	68, 85, 115, 124, 193, 194, 1975, 3487
NmeAIII	GCCGAG	1 cut(s)	1115
NmuCI	GTSAC	2 cut(s)	1612, 1868
NruI	TCGCGA	2 cut(s)	946, 2379
NspI	RCATGY	2 cut(s)	1220, 1388
PaeI	GCATGC	1 cut(s)	1220
PaeR7I	CTCGAG	1 cut(s)	44
PasI	CCCWGGG	2 cut(s)	19, 3217
PceI	AGGCCT	2 cut(s)	2920, 3388
PciSI	GCTCTTC	3 cut(s)	230, 2064, 3194
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 3463
PctI	GAATGC	1 cut(s)	1414
PdmI	GAANNNNTTC	3 cut(s)	952, 1254, 2556
PfeI	GAWTC	7 cut(s)	1289, 1358, 1505, 2611, 2750, 2852, 3459
PflMI	CCANNNNNTGG	2 cut(s)	37, 2416
PfoI	TCCNGGA	1 cut(s)	1047
PleI	GAGTC	5 cut(s)	298, 457, 2113, 2328, 2905
PpsI	GAGTC	5 cut(s)	298, 457, 2113, 2328, 2905
Ppu21I	YACGTR	1 cut(s)	1469
PpuMI	RGGWCCY	2 cut(s)	192, 205
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	2 cut(s)	45, 519
Psp5II	RGGWCCY	2 cut(s)	192, 205
Psp6I	CCWGG	7 cut(s)	18, 36, 72, 1047, 1508, 3216, 3488
PspFI	CCCAGC	1 cut(s)	1160
PspGI	CCWGG	7 cut(s)	18, 36, 72, 1047, 1508, 3216, 3488
PspN4I	GGNNCC	8 cut(s)	68, 85, 115, 124, 193, 194, 1975, 3487
PspPI	GGNCC	9 cut(s)	67, 83, 113, 192, 205, 312, 2200, 2867, 3016
PspPPI	RGGWCCY	2 cut(s)	192, 205
PstI	CTGCAG	2 cut(s)	1038, 2590
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	3 cut(s)	297, 498, 2836
PvuII	CAGCTG	1 cut(s)	2117
RruI	TCGCGA	2 cut(s)	946, 2379
RsaI	GTAC	4 cut(s)	341, 1783, 1975, 3281
RsaNI	GTAC	4 cut(s)	340, 1782, 1974, 3280
RseI	CAYNNNNRTG	3 cut(s)	1407, 2638, 3287
SacI	GAGCTC	2 cut(s)	45, 519
SapI	GCTCTTC	3 cut(s)	230, 2064, 3194
Sau96I	GGNCC	9 cut(s)	67, 83, 113, 192, 205, 312, 2200, 2867, 3016
SchI	GAGTC	5 cut(s)	299, 458, 2114, 2328, 2906
ScrFI	CCNGG	8 cut(s)	20, 38, 65, 74, 1049, 1510, 3218, 3490
SduI	GDGCHC	3 cut(s)	45, 519, 2288
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	8 cut(s)	1053, 1147, 1380, 1630, 2082, 2956, 3136, 3409
SfcI	CTRYAG	6 cut(s)	1034, 1579, 2271, 2586, 2807, 3382
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	4 cut(s)	192, 205, 2200, 3016
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	3 cut(s)	1407, 2638, 3287
SmlI	CTYRAG	7 cut(s)	44, 389, 491, 518, 1535, 2303, 2399
SmoI	CTYRAG	7 cut(s)	44, 389, 491, 518, 1535, 2303, 2399
SphI	GCATGC	1 cut(s)	1220
SseBI	AGGCCT	2 cut(s)	2920, 3388
SsiI	CCGC	9 cut(s)	34, 250, 330, 343, 772, 1847, 2281, 2929, 3333
SspI	AATATT	2 cut(s)	1139, 3172
SspMI	CTAG	7 cut(s)	321, 407, 794, 1067, 1995, 2066, 2471
SstI	GAGCTC	2 cut(s)	45, 519
StuI	AGGCCT	2 cut(s)	2920, 3388
StyD4I	CCNGG	8 cut(s)	18, 36, 63, 72, 1047, 1508, 3216, 3488
StyI	CCWWGG	8 cut(s)	163, 219, 397, 1558, 1623, 1824, 3012, 3481
TaaI	ACNGT	9 cut(s)	230, 1097, 1263, 1618, 1930, 2052, 3346, 3366, 3624
TaiI	ACGT	1 cut(s)	1471
TaqI	TCGA	5 cut(s)	45, 2731, 2776, 3310, 3457
TatI	WGTACW	1 cut(s)	3279
TauI	GCSGC	3 cut(s)	252, 333, 774
TfiI	GAWTC	7 cut(s)	1289, 1358, 1505, 2611, 2750, 2852, 3459
TscAI	CASTG	9 cut(s)	235, 340, 487, 1102, 1530, 1621, 1984, 3432, 3627
TseFI	GTSAC	2 cut(s)	1612, 1868
TseI	GCWGC	8 cut(s)	572, 919, 1033, 2095, 2588, 2764, 3350, 3422
Tsp45I	GTSAC	2 cut(s)	1612, 1868
TspGWI	ACGGA	3 cut(s)	176, 992, 3455
TspRI	CASTG	9 cut(s)	235, 340, 487, 1102, 1530, 1621, 1984, 3432, 3627
Van91I	CCANNNNNTGG	2 cut(s)	37, 2416
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	4 cut(s)	192, 205, 2200, 3016
XceI	RCATGY	2 cut(s)	1220, 1388
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1984, 3496
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	3 cut(s)	952, 1254, 2556
XspI	CTAG	7 cut(s)	321, 407, 794, 1067, 1995, 2066, 2471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.