Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006326

Physical Location & Seq

Genomic Coordinates Forward (+)

19069896 .. 19070558

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGATCGATCCATTTTTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTTCGTGATATGGAACAATTATCTGGCGGTGAGAAAACTGTTGCAGCATTGGCATTACTCTTTTCCATACACAGTTTTAGGCCTTCACCGTTTTTCATACTGGATGAAGTCGATGCTGCACTAGATAACTTGAATGTTGCTAAGGTTGCTGGATTCATCCGTTCAAAGTCACGTGAAGGAGCCAGGGCTAACCAAGATGATGAGGGAGGCGGTGGTTTTCAGAGCATTGTAATATCTCTAAAAGATAGTTTCTACGACAAGGCTGATGCTTTAGTTGGGGTTTACAGGGACTGCGAAAGGAGCTGTTCGGAAACTCTGACATTTGACCTGACCAAGTATCGGGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000819 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008278 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

137

Amino Acids

15.12

Weight (kDa)

5.68

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	24 - 116	1.7e-22	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54670
fragaria_vesca	FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371 FvH4_2g21371
malus_domestica	MD05G1196500.v1.1 MD10G1183700.v1.1
prunus_persica	Prupe.8G222900_v2.0.a1 Prupe.8G223100_v2.0.a1
pyrus_communis	pycom05g18350 pycom05g18360 pycom10g15870 pycom10g15880
rosa_chinensis	RchiOBHm_Chr6g0287971
rosa_laevigata	RLG00000012450
rosa_multiflora	Rmu_co8056790.1_g000001 Rmu_co8420611.1_g000001 Rmu_sc0005266.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180620 Rroxscaffold_7G00180920
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303100 Rh6BG309300 Rh6DG301800
rosa_wichuraiana	Rw6G026210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 270
AclWI	GGATC	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	193, 225
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	351
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	104, 176
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	101, 138
BbrPI	CACGTG	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	116, 163
BciT130I	CCWGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	2 cut(s)	105, 177
BlsI	GCNGC	2 cut(s)	106, 178
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	36, 163, 316
Bpu10I	CCTNAGC	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	169, 216
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	116, 163
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	6, 10
BspACI	CCGC	2 cut(s)	87, 270
BspANI	GGCC	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	6, 10
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	100, 134, 150
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	169, 216
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	9, 13
BstMBI	GATC	2 cut(s)	6, 10
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 206, 360
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	116, 163
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	169, 216
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	142, 242, 248, 323, 363
CviKI_1	RGCY	5 cut(s)	142, 242, 248, 323, 363
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	8, 12
DpnII	GATC	2 cut(s)	6, 10
Eco147I	AGGCCT	1 cut(s)	142
Eco47III	AGCGCT	1 cut(s)	59
Eco72I	CACGTG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	242
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 44, 71, 128, 158
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	105, 177
FokI	GGATG	2 cut(s)	176, 203
Fsp4HI	GCNGC	2 cut(s)	105, 177
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	105, 177
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	213, 404
HphI	GGTGA	2 cut(s)	101, 138
Hpy166II	GTNNAC	2 cut(s)	36, 343
Hpy188I	TCNGA	3 cut(s)	282, 370, 378
Hpy188III	TCNNGA	3 cut(s)	65, 401, 408
Hpy8I	GTNNAC	2 cut(s)	36, 343
HpyAV	CCTTC	2 cut(s)	153, 230
HpyCH4III	ACNGT	3 cut(s)	100, 134, 150
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	104, 179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 206, 360
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	6, 10
LmnI	GCTCC	2 cut(s)	239, 360
LpnPI	CCDG	7 cut(s)	69, 146, 195, 229, 256, 331, 401
Lsp1109I	GCAGC	2 cut(s)	116, 163
LweI	GCATC	3 cut(s)	36, 163, 316
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	8, 12
MboI	GATC	2 cut(s)	6, 10
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	2 cut(s)	256, 260
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	110, 206, 360
NdeII	GATC	2 cut(s)	6, 10
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	106, 178
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	2 cut(s)	105, 177
Sau3AI	GATC	2 cut(s)	6, 10
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	4 cut(s)	207, 235, 365, 390
SfaNI	GCATC	3 cut(s)	36, 163, 316
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	77
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	87, 270
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	100, 134, 150
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	9, 171
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	104, 176
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	4 cut(s)	17, 145, 180, 205
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	43
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.