Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_21

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Forward (+)

15811 .. 19331

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCTTTTTCACTAACTATTGAGAAAGAATTTGCTCAAAACTCAGAAAGGGTTAAATCTGTGGATCAACATCCAACTGAGCCATGGATTCTAGTAAGTTTGTATTCAGGAACTCTTTGTATCTGGAACTACCAGTCACAGACCATGGAGAAGTCCTTCAAGGTCACTGAGTCACCAGTGAGGTCAGCCAAGTTCATAGCACGCGAAAACTGGATTGTAACTGCGGCTGATGACAAGTACATTCGCATATACAACTATGATACGATGGAAAAGATCAAAGAATATGAAGCACACACAGACTATATCAGGAGTGTTGCTGTCCATCCCACTCTACCATATCTGTTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGATTGGGAGAAGGATTGGTCATGTACTCAGATCCTCGAGGGGCATTCGCACTATGTGATGCAAGTGGCATTTAATCCGAAAGACACCAATACTTTTGCTAGTGCATCGCTTGATGGCACCATTAAGATATGGAACATTGGTTCTCCTAAAGCAGAGTTTACCTTAGATGGCCACTCAAACGGAGTTAATTGCATCGATTACTTCAGTTGCGGGGATAAACCATATCTATTGAGTGGCTCTGACGACTCTACTGCTAAGGTTTGGGACCAAGTGCTGGTTATCAGCTTTCTGTTTAGCTCTATATGTACAGCGTACGATTATGGTGCGTATATGTGTCATACTAATTTGAATTTTATTTGTAAATTATTTTGGCAACAGGTATGGGACATTGAAACCAAAAGTTGTGTGCAAACTCTAGAAGGTCATGAGCACAATGTAACAGCTGTATGTGTTCATGCTGAGCTTCCCATAATAATTACAGTTTCTGAGGATGGGAACATTCACATATGGAATGCAACCACTTTTAGGCTAGAGAACAAATTGAACTATGGTCTTGAAAGAGTATGGGCCATTGGACAGTTGAAAGGATCAAACAAGGTTGCATTTGGTTTTGACAAAGGAACCATTGTGGTTAAAATGAATGGCTCTCATACTTGGGATTCTGTTGACCTCCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

353

Amino Acids

40.16

Weight (kDa)

5.35

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AbsI	CCTCGAGG	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	224, 588
AclWI	GGATC	3 cut(s)	72, 403, 973
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	29, 727
AcuI	CTGAAG	1 cut(s)	565
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	4 cut(s)	239, 403, 685, 692
AfiI	CCNNNNNNNGG	2 cut(s)	652, 903
AgsI	TTSAA	6 cut(s)	160, 727, 770, 922, 935, 961
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	6 cut(s)	373, 663, 675, 821, 841, 1055
AluI	AGCT	6 cut(s)	373, 663, 675, 821, 841, 1055
Alw21I	GWGCWC	1 cut(s)	810
AlwI	GGATC	3 cut(s)	72, 403, 973
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	547, 945
ApoI	RAATTY	2 cut(s)	29, 727
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	643, 945
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	810
BccI	CCATC	5 cut(s)	259, 330, 485, 539, 863
BcgI	CGANNNNNNTGC	4 cut(s)	611, 645, 683, 717
BfaI	CTAG	4 cut(s)	92, 477, 794, 908
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	643, 945
BmiI	GGNNCC	3 cut(s)	496, 644, 1000
BmsI	GCATC	3 cut(s)	426, 491, 579
Bpu10I	CCTNAGC	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	83, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 903
Bse1I	ACTGG	3 cut(s)	133, 176, 215
Bse8I	GATNNNNATC	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	83, 144
BseGI	GGATG	3 cut(s)	70, 322, 874
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	652, 903
BseMII	CTCAG	6 cut(s)	57, 69, 159, 419, 828, 855
BseNI	ACTGG	3 cut(s)	133, 176, 215
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	549, 947
BshNI	GGYRCC	1 cut(s)	494
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	1 cut(s)	413
BsiWI	CGTACG	1 cut(s)	690
BslFI	GGGAC	2 cut(s)	656, 776
BslI	CCNNNNNNNGG	2 cut(s)	652, 903
BsmFI	GGGAC	2 cut(s)	656, 776
BsmI	GAATGC	2 cut(s)	421, 895
BsnI	GGCC	2 cut(s)	549, 947
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp1407I	TGTACA	1 cut(s)	683
Bsp143I	GATC	4 cut(s)	64, 273, 408, 965
Bsp1720I	GCTNAGC	1 cut(s)	837
Bsp19I	CCATGG	2 cut(s)	83, 144
BspACI	CCGC	2 cut(s)	224, 588
BspANI	GGCC	2 cut(s)	549, 947
BspCNI	CTCAG	6 cut(s)	56, 70, 160, 418, 829, 856
BspDI	ATCGAT	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	496, 644, 1000
BspPI	GGATC	3 cut(s)	72, 403, 973
BspT107I	GGYRCC	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	133, 176, 215
BssECI	CCNNGG	2 cut(s)	83, 144
BssMI	GATC	4 cut(s)	64, 273, 408, 965
BssT1I	CCWWGG	2 cut(s)	83, 144
Bst4CI	ACNGT	2 cut(s)	859, 957
BstAUI	TGTACA	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	9 cut(s)	43, 78, 168, 405, 541, 633, 837, 864, 1056
BstDSI	CCRYGG	2 cut(s)	83, 144
BstF5I	GGATG	3 cut(s)	70, 322, 874
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	4 cut(s)	67, 276, 411, 968
BstMBI	GATC	4 cut(s)	64, 273, 408, 965
BstUI	CGCG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	549, 947
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	2 cut(s)	83, 144
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	70, 322, 874
BtsIMutI	CAGTG	2 cut(s)	165, 183
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	643, 945
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	4 cut(s)	238, 402, 684, 691
CviAII	CATG	6 cut(s)	84, 145, 348, 399, 803, 833
CviQI	GTAC	4 cut(s)	238, 402, 684, 691
DdeI	CTNAG	9 cut(s)	43, 78, 168, 405, 541, 633, 837, 864, 1056
DpnI	GATC	4 cut(s)	66, 275, 410, 967
DpnII	GATC	4 cut(s)	64, 273, 408, 965
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	83, 144
Eco47I	GGWCC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	413
EcoT14I	CCWWGG	2 cut(s)	83, 144
ErhI	CCWWGG	2 cut(s)	83, 144
FaeI	CATG	6 cut(s)	87, 148, 351, 402, 806, 836
FaqI	GGGAC	2 cut(s)	656, 776
FatI	CATG	6 cut(s)	83, 144, 347, 398, 802, 832
FauI	CCCGC	1 cut(s)	581
FauNDI	CATATG	1 cut(s)	884
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	57, 309, 881
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	4 cut(s)	92, 477, 794, 908
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	549, 947
Hin1II	CATG	6 cut(s)	87, 148, 351, 402, 806, 836
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	2 cut(s)	371, 1053
HinfI	GANTC	4 cut(s)	88, 170, 623, 1037
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	537, 1045
Hpy188I	TCNGA	6 cut(s)	46, 355, 408, 456, 619, 865
Hpy188III	TCNNGA	6 cut(s)	108, 124, 307, 794, 803, 932
Hpy8I	GTNNAC	2 cut(s)	537, 1045
HpyAV	CCTTC	3 cut(s)	166, 382, 791
HpyCH4III	ACNGT	2 cut(s)	859, 957
HpyCH4V	TGCA	6 cut(s)	439, 482, 570, 787, 893, 980
HpyF3I	CTNAG	9 cut(s)	43, 78, 168, 405, 541, 633, 837, 864, 1056
Hsp92II	CATG	6 cut(s)	87, 148, 351, 402, 806, 836
Kzo9I	GATC	4 cut(s)	64, 273, 408, 965
LpnPI	CCDG	8 cut(s)	93, 109, 146, 189, 196, 292, 638, 740
LweI	GCATC	3 cut(s)	426, 491, 579
MaeI	CTAG	4 cut(s)	92, 477, 794, 908
MaeIII	GTNAC	5 cut(s)	135, 163, 171, 217, 814
MalI	GATC	4 cut(s)	66, 275, 410, 967
MboI	GATC	4 cut(s)	64, 273, 408, 965
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	810
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	7 cut(s)	29, 565, 721, 727, 740, 852, 917
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	179, 617
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	174, 409, 422, 859, 1058
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	5 cut(s)	54, 450, 501, 564, 1011
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	821
Mva1269I	GAATGC	2 cut(s)	421, 895
MvnI	CGCG	1 cut(s)	204
NcoI	CCATGG	2 cut(s)	83, 144
NdeI	CATATG	1 cut(s)	884
NdeII	GATC	4 cut(s)	64, 273, 408, 965
NlaIII	CATG	6 cut(s)	87, 148, 351, 402, 806, 836
NlaIV	GGNNCC	3 cut(s)	496, 644, 1000
NmuCI	GTSAC	3 cut(s)	135, 163, 171
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	802
PctI	GAATGC	2 cut(s)	421, 895
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	88, 1037
Pfl23II	CGTACG	1 cut(s)	690
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	178, 617
PpsI	GAGTC	2 cut(s)	178, 617
PsiI	TTATAA	1 cut(s)	368
PspLI	CGTACG	1 cut(s)	690
PspN4I	GGNNCC	3 cut(s)	496, 644, 1000
PspPI	GGNCC	2 cut(s)	643, 945
PspXI	VCTCGAGB	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	4 cut(s)	239, 403, 685, 692
RsaNI	GTAC	4 cut(s)	238, 402, 684, 691
SaqAI	TTAA	5 cut(s)	54, 450, 501, 564, 1011
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	64, 273, 408, 965
Sau96I	GGNCC	2 cut(s)	643, 945
SchI	GAGTC	2 cut(s)	179, 617
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	3 cut(s)	426, 491, 579
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	643
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	7 cut(s)	29, 565, 721, 727, 740, 852, 917
SsiI	CCGC	2 cut(s)	224, 588
SspMI	CTAG	4 cut(s)	92, 477, 794, 908
StyI	CCWWGG	2 cut(s)	83, 144
TaaI	ACNGT	2 cut(s)	859, 957
TaqI	TCGA	2 cut(s)	414, 573
TasI	AATT	7 cut(s)	29, 565, 721, 727, 740, 852, 917
TatI	WGTACW	3 cut(s)	237, 401, 683
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	88, 1037
Tru1I	TTAA	5 cut(s)	54, 450, 501, 564, 1011
Tru9I	TTAA	5 cut(s)	54, 450, 501, 564, 1011
TscAI	CASTG	2 cut(s)	172, 183
TseFI	GTSAC	3 cut(s)	135, 163, 171
Tsp45I	GTSAC	3 cut(s)	135, 163, 171
TspDTI	ATGAA	4 cut(s)	184, 300, 821, 1031
TspGWI	ACGGA	1 cut(s)	573
TspRI	CASTG	2 cut(s)	172, 183
Van91I	CCANNNNNTGG	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	2 cut(s)	29, 727
XbaI	TCTAGA	1 cut(s)	793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	4 cut(s)	92, 477, 794, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.