Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017146.1

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

87 .. 1909

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017146.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgctagcaagtttgtattcaggaactatttgtatttggaactaccagtcacagaccctggagaagtccatcaaagtcactgagtcaccagtcagatcagtaaagtttgtagctcgcaaacactggattataactggggctgatgacaagttcattcgcgtatacaactacaataccatggaaaagatcaaagagtatgaagcacatactgattatatcaggagtgtcactgtccatccaactctaccatatctgctgtcatgttctgatgacaaggttataaagctttgggactgggagaaggactgggaatgcactcaggtctttgaggggcattcccactatgtgatgcaagtggctttcaatccgaaagacaccaatagttttgctagtgcctctctcgatggaaccattaagacatggaacattggctcttctgccccaaattttacactacaaggccactcaaaaggagtgaattgtgttgattacttcattcacagcgataagacttacctgttaagtggttctgatgacttcactgccaaggtgtgggactatgaaactacaagttgtgtgaaaactctagaaggtcatgagaacaatgtaacaactgtgagtgttcatcctgagcttcccataataattaccgcttctgaggatgggactgttcatatatggaatgcaaccacatttagtctagagcacaaactgaactatggtcttgaaagagtttgggccattggacacatgaaaggatcatacaaggttgcatttggttttgacaatggaaccattatagtcaaaatgaatgcttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

274

Amino Acids

31.06

Weight (kDa)

6.04

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	131, 281
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	445
AdeI	CACNNNGTG	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	364, 728
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	113, 286, 634
AluI	AGCT	3 cut(s)	113, 286, 634
Alw21I	GWGCWC	1 cut(s)	708
AlwI	GGATC	1 cut(s)	766
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	460, 738
ApoI	RAATTY	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	78
AsuNHI	GCTAGC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	708
BccI	CCATC	4 cut(s)	77, 243, 398, 656
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	4 cut(s)	5, 390, 587, 701
Bme1390I	CCNGG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	2 cut(s)	409, 793
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	3 cut(s)	144, 304, 316
BmsI	GCATC	1 cut(s)	339
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	3 cut(s)	144, 304, 316
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	57, 177, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
Bse1I	ACTGG	6 cut(s)	46, 89, 128, 139, 299, 311
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 177, 546
BseGI	GGATG	3 cut(s)	235, 625, 667
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	4 cut(s)	72, 332, 621, 648
BseNI	ACTGG	6 cut(s)	46, 89, 128, 139, 299, 311
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	462, 740
BsiHKAI	GWGCWC	1 cut(s)	708
BslFI	GGGAC	3 cut(s)	305, 569, 679
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmFI	GGGAC	3 cut(s)	305, 569, 679
BsmI	GAATGC	4 cut(s)	317, 334, 688, 817
BsnI	GGCC	2 cut(s)	462, 740
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	95, 186, 758
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	651
BspANI	GGCC	2 cut(s)	462, 740
BspCNI	CTCAG	4 cut(s)	73, 331, 622, 649
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	409, 793
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	766
BspQI	GCTCTTC	1 cut(s)	439
BsrI	ACTGG	6 cut(s)	46, 89, 128, 139, 299, 311
BssECI	CCNNGG	3 cut(s)	57, 177, 546
BssMI	GATC	3 cut(s)	95, 186, 758
BssNAI	GTATAC	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	177, 546
Bst1107I	GTATAC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	232, 616, 670
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	6, 115
BstDEI	CTNAG	4 cut(s)	81, 318, 630, 657
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	235, 625, 667
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	98, 189, 761
BstMBI	GATC	3 cut(s)	95, 186, 758
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	159
BstZ17I	GTATAC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	462, 740
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	235, 625, 667
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	78, 121, 228, 540
Cac8I	GCNNGC	2 cut(s)	6, 115
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	738
CviAII	CATG	5 cut(s)	178, 261, 420, 596, 751
CviJI	RGCY	8 cut(s)	113, 140, 286, 359, 432, 462, 634, 740
CviKI_1	RGCY	8 cut(s)	113, 140, 286, 359, 432, 462, 634, 740
DdeI	CTNAG	4 cut(s)	81, 318, 630, 657
DpnI	GATC	3 cut(s)	97, 188, 760
DpnII	GATC	3 cut(s)	95, 186, 758
DraIII	CACNNNGTG	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	2 cut(s)	177, 546
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	177, 546
ErhI	CCWWGG	2 cut(s)	177, 546
FaeI	CATG	5 cut(s)	181, 264, 423, 599, 754
FaqI	GGGAC	3 cut(s)	305, 569, 679
FatI	CATG	5 cut(s)	177, 260, 419, 595, 750
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	3 cut(s)	222, 612, 674
FspBI	CTAG	4 cut(s)	5, 390, 587, 701
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	462, 740
Hin1II	CATG	5 cut(s)	181, 264, 423, 599, 754
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	5 cut(s)	95, 268, 369, 532, 658
Hpy188III	TCNNGA	8 cut(s)	21, 220, 401, 587, 596, 629, 701, 725
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	295, 584
HpyCH4III	ACNGT	3 cut(s)	232, 616, 670
HpyCH4V	TGCA	4 cut(s)	315, 352, 686, 773
HpyF3I	CTNAG	4 cut(s)	81, 318, 630, 657
Hsp92II	CATG	5 cut(s)	181, 264, 423, 599, 754
Kzo9I	GATC	3 cut(s)	95, 186, 758
LguI	GCTCTTC	1 cut(s)	439
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	4 cut(s)	5, 390, 587, 701
MaeIII	GTNAC	5 cut(s)	48, 76, 84, 226, 607
MalI	GATC	3 cut(s)	97, 188, 760
MboI	GATC	3 cut(s)	95, 186, 758
MboII	GAAGA	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	3 cut(s)	445, 478, 645
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	322, 406, 652
MseI	TTAA	2 cut(s)	414, 521
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	4 cut(s)	317, 334, 688, 817
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	95, 186, 758
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	181, 264, 423, 599, 754
NlaIV	GGNNCC	2 cut(s)	409, 793
NmuCI	GTSAC	4 cut(s)	48, 76, 84, 226
PagI	TCATGA	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	439
PctI	GAATGC	4 cut(s)	317, 334, 688, 817
PflMI	CCANNNNNTGG	1 cut(s)	552
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PsiI	TTATAA	2 cut(s)	131, 281
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	409, 793
PspPI	GGNCC	1 cut(s)	738
PstNI	CAGNNNCTG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	414, 521
Sau3AI	GATC	3 cut(s)	95, 186, 758
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	708
SetI	ASST	9 cut(s)	115, 279, 288, 324, 519, 552, 595, 636, 771
SfaNI	GCATC	1 cut(s)	339
Sse9I	AATT	3 cut(s)	445, 478, 645
SsiI	CCGC	1 cut(s)	651
SspMI	CTAG	4 cut(s)	5, 390, 587, 701
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	177, 546
TaaI	ACNGT	3 cut(s)	232, 616, 670
TaqI	TCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	445, 478, 645
Tru1I	TTAA	2 cut(s)	414, 521
Tru9I	TTAA	2 cut(s)	414, 521
TscAI	CASTG	4 cut(s)	85, 128, 235, 547
TseFI	GTSAC	4 cut(s)	48, 76, 84, 226
Tsp45I	GTSAC	4 cut(s)	48, 76, 84, 226
TspDTI	ATGAA	8 cut(s)	142, 213, 484, 576, 614, 662, 767, 824
TspRI	CASTG	4 cut(s)	85, 128, 235, 547
Van91I	CCANNNNNTGG	1 cut(s)	552
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	2 cut(s)	586, 700
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	4 cut(s)	5, 390, 587, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.