Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

55224817 .. 55264179

Gene Structure 39363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTCTTTCTCTAACTATTGAGAAAGAATTTGCTCAAACCTCAGAGAGAGTGAAGTCTGTAGATCTGCATCCAACTGAGCCATGGATGCTAGCAAGTTTGTATTCAGGAACTATTTGTATTTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAGGTCACTGAGTCACCAGTCAGATCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACAGGGGCTGATGACAAGTTCATTCGCGTATACAACTACAATACTATGGAAAAGATCAAAGAGTATGAAGCACATACTGACTATATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCACTCAGGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCCATCCGAAAGACACCAATAGTTTTGCTAGCGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCGAATTTTACATTACAAGGCCACTTAAAAGGAGTGAATTGTATTGATTACTTCGCTCACAGCAATAAGACTTACCTTTTAAGTGGTTCTGATGACTTCACTGCCAAGGTATGGGACTCTGAAACTACAAGTTGTGTGCAAACTCTAAAAGGTCATGAGAACAATGTAACAACTGTGAGTGTTCATCCTGAGCTTCCCATAATAATTACAACTTCTGAGGATGGGACTGTTCATATATGGAATGCAACCACATTTAGTCTAGAGCGCAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGTCACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCATTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

304

Amino Acids

34.38

Weight (kDa)

6.22

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	4 - 171	1.1e-17	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	10 - 175	1e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	10 - 154	1.3e-19	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 114	3.2e-11	THOC3 beta-propeller domain
EIF3I	PF24805	13 - 112	1.2e-06	EIF3I
Beta-prop_WDR5	PF25175	14 - 172	3.2e-28	WDR5 beta-propeller domain
WDR55	PF24796	14 - 199	5.7e-19	WDR55
WD40_Prp19	PF24814	14 - 191	1.6e-25	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	20 - 173	1.2e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	35 - 209	7.3e-15	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	35 - 277	6.8e-27	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	58 - 131	1.1e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	64 - 171	5.2e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR75_1st	PF23869	76 - 129	6.2e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	90 - 127	7.5e-09	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	114 - 189	2.7e-15	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	117 - 274	3.5e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	132 - 291	5.4e-28	WDR3 first beta-propeller domain
WD40	PF00400	132 - 171	8.1e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	133 - 208	8.9e-06	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	134 - 180	2.5e-07	WDHD1 first WD40 domain
Beta-prop_WDR41	PF25178	137 - 257	2.2e-06	WDR41
Beta-prop_WDR5	PF25175	154 - 278	1.1e-27	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	154 - 291	7.3e-13	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	161 - 260	1.6e-06	SCAP Beta-propeller
WD40	PF00400	177 - 215	2.3e-08	WD domain, G-beta repeat
EIF3I	PF24805	180 - 260	1.6e-06	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	180 - 264	4.1e-08	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	186 - 263	1e-14	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	189 - 292	3.8e-14	WDHD1 first WD40 domain
WDR55	PF24796	193 - 296	3.2e-11	WDR55
Beta-prop_TEP1_2nd	PF25047	195 - 261	1.4e-07	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	196 - 260	9.7e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	198 - 269	3.1e-13	THOC3 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	199 - 259	8.4e-08	WD repeat-containing protein 75 first beta-propeller
WD40_Gbeta	PF25391	201 - 257	8.7e-07	G protein beta WD-40 repeat protein
WD40	PF00400	220 - 257	7.9e-10	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	234 - 298	2.9e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 368
AccB7I	CCANNNNNTGG	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	246
AclWI	GGATC	1 cut(s)	853
AcsI	RAATTY	2 cut(s)	29, 532
AdeI	CACNNNGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	1 cut(s)	815
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	200, 373, 721
AluI	AGCT	3 cut(s)	200, 373, 721
AlwI	GGATC	1 cut(s)	853
AlwNI	CAGNNNCTG	2 cut(s)	145, 227
AoxI	GGCC	2 cut(s)	547, 825
ApoI	RAATTY	2 cut(s)	29, 532
AspLEI	GCGC	2 cut(s)	482, 795
AspS9I	GGNCC	1 cut(s)	825
AsuHPI	GGTGA	1 cut(s)	165
AsuNHI	GCTAGC	2 cut(s)	91, 476
BccI	CCATC	5 cut(s)	164, 330, 459, 485, 743
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	3 cut(s)	92, 477, 788
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	483
BglII	AGATCT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	496, 880
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	2 cut(s)	391, 403
BmsI	GCATC	3 cut(s)	78, 79, 426
BmtI	GCTAGC	2 cut(s)	95, 480
BmuI	ACTGGG	2 cut(s)	391, 403
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	83, 144, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	5 cut(s)	133, 176, 215, 386, 398
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	83, 144, 633
BseGI	GGATG	6 cut(s)	70, 93, 322, 451, 712, 754
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	6 cut(s)	57, 69, 159, 419, 708, 735
BseNI	ACTGG	5 cut(s)	133, 176, 215, 386, 398
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	549, 827
BslFI	GGGAC	3 cut(s)	392, 656, 766
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmFI	GGGAC	3 cut(s)	392, 656, 766
BsmI	GAATGC	4 cut(s)	404, 421, 775, 904
BsnI	GGCC	2 cut(s)	549, 827
Bsp143I	GATC	4 cut(s)	64, 182, 273, 845
Bsp19I	CCATGG	1 cut(s)	83
BspANI	GGCC	2 cut(s)	549, 827
BspCNI	CTCAG	6 cut(s)	56, 70, 160, 418, 709, 736
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	496, 880
BspOI	GCTAGC	2 cut(s)	95, 480
BspPI	GGATC	1 cut(s)	853
BspQI	GCTCTTC	1 cut(s)	526
BsrI	ACTGG	5 cut(s)	133, 176, 215, 386, 398
BssECI	CCNNGG	3 cut(s)	83, 144, 633
BssMI	GATC	4 cut(s)	64, 182, 273, 845
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	83, 633
Bst1107I	GTATAC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	3 cut(s)	319, 703, 757
Bst6I	CTCTTC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	93, 202, 478
BstDEI	CTNAG	6 cut(s)	43, 78, 168, 405, 717, 744
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	6 cut(s)	70, 93, 322, 451, 712, 754
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	482, 795
BstKTI	GATC	4 cut(s)	67, 185, 276, 848
BstMBI	GATC	4 cut(s)	64, 182, 273, 845
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZ17I	GTATAC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	549, 827
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	6 cut(s)	70, 93, 322, 451, 712, 754
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	165, 208, 315, 627
Cac8I	GCNNGC	3 cut(s)	93, 202, 478
CaiI	CAGNNNCTG	2 cut(s)	145, 227
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	2 cut(s)	482, 795
Cfr13I	GGNCC	1 cut(s)	825
CviAII	CATG	5 cut(s)	84, 348, 507, 683, 838
DdeI	CTNAG	6 cut(s)	43, 78, 168, 405, 717, 744
DpnI	GATC	4 cut(s)	66, 184, 275, 847
DpnII	GATC	4 cut(s)	64, 182, 273, 845
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	83, 633
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	83, 633
ErhI	CCWWGG	2 cut(s)	83, 633
FaeI	CATG	5 cut(s)	87, 351, 510, 686, 841
FaqI	GGGAC	3 cut(s)	392, 656, 766
FatI	CATG	5 cut(s)	83, 347, 506, 682, 837
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	6 cut(s)	57, 100, 309, 438, 699, 761
FspBI	CTAG	3 cut(s)	92, 477, 788
GlaI	GCGC	2 cut(s)	481, 794
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	549, 827
HhaI	GCGC	2 cut(s)	482, 795
Hin1II	CATG	5 cut(s)	87, 351, 510, 686, 841
Hin6I	GCGC	2 cut(s)	480, 793
HinP1I	GCGC	2 cut(s)	480, 793
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	170, 644
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	7 cut(s)	46, 182, 355, 456, 619, 649, 745
Hpy188III	TCNNGA	7 cut(s)	108, 307, 488, 683, 716, 788, 812
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	3 cut(s)	319, 703, 757
HpyCH4V	TGCA	6 cut(s)	70, 402, 439, 667, 773, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	6 cut(s)	43, 78, 168, 405, 717, 744
Hsp92II	CATG	5 cut(s)	87, 351, 510, 686, 841
HspAI	GCGC	2 cut(s)	480, 793
Kzo9I	GATC	4 cut(s)	64, 182, 273, 845
LguI	GCTCTTC	1 cut(s)	526
LweI	GCATC	3 cut(s)	78, 79, 426
MaeI	CTAG	3 cut(s)	92, 477, 788
MaeIII	GTNAC	6 cut(s)	135, 163, 171, 313, 694, 833
MalI	GATC	4 cut(s)	66, 184, 275, 847
MboI	GATC	4 cut(s)	64, 182, 273, 845
MboII	GAAGA	1 cut(s)	513
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	4 cut(s)	29, 532, 565, 732
MlyI	GAGTC	2 cut(s)	179, 638
MmeI	TCCRAC	2 cut(s)	98, 350
MnlI	CCTC	4 cut(s)	52, 409, 493, 739
MseI	TTAA	3 cut(s)	501, 554, 608
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	4 cut(s)	404, 421, 775, 904
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	64, 182, 273, 845
NheI	GCTAGC	2 cut(s)	91, 476
NlaIII	CATG	5 cut(s)	87, 351, 510, 686, 841
NlaIV	GGNNCC	2 cut(s)	496, 880
NmuCI	GTSAC	5 cut(s)	135, 163, 171, 313, 833
PagI	TCATGA	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	526
PctI	GAATGC	4 cut(s)	404, 421, 775, 904
PflMI	CCANNNNNTGG	1 cut(s)	639
PleI	GAGTC	2 cut(s)	178, 638
PpsI	GAGTC	2 cut(s)	178, 638
PsiI	TTATAA	2 cut(s)	218, 368
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	496, 880
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	2 cut(s)	145, 227
PsuI	RGATCY	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	526
SaqAI	TTAA	3 cut(s)	501, 554, 608
Sau3AI	GATC	4 cut(s)	64, 182, 273, 845
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	2 cut(s)	179, 638
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	3 cut(s)	78, 79, 426
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	29, 532, 565, 732
SspMI	CTAG	3 cut(s)	92, 477, 788
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	83, 633
TaaI	ACNGT	3 cut(s)	319, 703, 757
TaqI	TCGA	1 cut(s)	489
TasI	AATT	4 cut(s)	29, 532, 565, 732
Tru1I	TTAA	3 cut(s)	501, 554, 608
Tru9I	TTAA	3 cut(s)	501, 554, 608
TscAI	CASTG	4 cut(s)	172, 215, 322, 634
TseFI	GTSAC	5 cut(s)	135, 163, 171, 313, 833
Tsp45I	GTSAC	5 cut(s)	135, 163, 171, 313, 833
TspDTI	ATGAA	6 cut(s)	229, 300, 701, 749, 854, 911
TspRI	CASTG	4 cut(s)	172, 215, 322, 634
Van91I	CCANNNNNTGG	1 cut(s)	639
XapI	RAATTY	2 cut(s)	29, 532
XbaI	TCTAGA	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	3 cut(s)	92, 477, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.