Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

52986047 .. 52989941

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAATCATATCTGTTGTCTGAGTGGACTTATAATAACAGTTTAGCTCTTTCACTAACTATTGAGAAAGAATTTGCTCAAACCTCAGAGAGAGTGAAGTCTGTAGATCTGCATCCAACTGAGCCATGGATGCTAGCAAGTTTGTATTCAGGAACTATTTGTATTTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAAGTCACTGAGTCACCAGTCAGATCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACTGGGGCTGATGACAAGTTCATTCGCGTATACAACTACAATACCATGGAAAAGATCAAAGAGTATGAAGCACATACTGATTATATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCACTCAGGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCGAAAGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCAAATTTTACACTACAAGGCCACTCAAAAGGAGTGAATTGTGTTGATTACTTCATTCACAGCGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACTGCCAAGGTGTGGGACTATGAAACTACAAGTTGTGTGAAAACTCTAGAAGGTCATGAGAACAATGTAACAACTGTGAGTGTTCATCCTGAGCTTCCCATAATAATTACCGCTTCTGAGGATGGGACTGTTCATATATGGAATGCAACCACATTTAGTCTAGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGACACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCATTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

317

Amino Acids

36.09

Weight (kDa)

5.89

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_2nd	PF25168	7 - 189	5.5e-15	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	16 - 185	3.4e-18	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	22 - 140	2.2e-12	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	23 - 127	3.5e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	24 - 169	9.2e-20	WDR3 first beta-propeller domain
EIF3I	PF24805	26 - 126	1.1e-06	EIF3I
WDR55	PF24796	28 - 212	1.9e-19	WDR55
WD40_Prp19	PF24814	28 - 151	1.5e-17	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	34 - 187	1.2e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	49 - 209	2.1e-13	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	49 - 240	5e-25	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	69 - 168	8.5e-21	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	71 - 145	1.1e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	81 - 185	7e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR75_1st	PF23869	90 - 143	6.5e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	104 - 141	8e-09	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	112 - 204	1.9e-16	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	112 - 187	8.1e-06	TEP-1 second beta-propeller
Beta-prop_EML	PF23409	131 - 281	5e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	146 - 185	1.8e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	147 - 304	2.1e-28	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	148 - 304	4.3e-22	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	148 - 199	1.8e-07	WDHD1 first WD40 domain
EIF3I	PF24805	152 - 239	1.1e-06	EIF3I
Beta-prop_WDR5	PF25175	168 - 292	2.1e-27	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	169 - 305	6.3e-15	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	175 - 274	4.7e-08	SCAP Beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	175 - 271	3.1e-07	MABP1/WDR62 second WD40 domain
WD40	PF00400	191 - 229	6e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	194 - 280	5.3e-08	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	195 - 274	1.1e-06	EIF3I
Beta-prop_WDR41	PF25178	195 - 274	4.9e-06	WDR41
WDR55	PF24796	197 - 310	2.4e-11	WDR55
Beta-prop_THOC3	PF25174	198 - 286	1e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	203 - 307	2.2e-15	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	208 - 274	1.1e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st	PF23869	209 - 273	6.5e-08	WD repeat-containing protein 75 first beta-propeller
WD40_Gbeta	PF25391	209 - 271	1.3e-06	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	211 - 281	1.8e-06	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	212 - 274	8.2e-07	TEP-1 second beta-propeller
WD40	PF00400	234 - 271	4e-10	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	248 - 312	2.5e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	33, 260, 410
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	780
AclWI	GGATC	1 cut(s)	895
AcsI	RAATTY	2 cut(s)	71, 574
AdeI	CACNNNGTG	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	681
AgsI	TTSAA	2 cut(s)	493, 857
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	47, 242, 415, 763
AluI	AGCT	4 cut(s)	47, 242, 415, 763
Alw21I	GWGCWC	1 cut(s)	837
AlwI	GGATC	1 cut(s)	895
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	589, 867
ApoI	RAATTY	2 cut(s)	71, 574
AspS9I	GGNCC	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	207
AsuNHI	GCTAGC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	837
BccI	CCATC	4 cut(s)	206, 372, 527, 785
BciT130I	CCWGG	1 cut(s)	188
BfaI	CTAG	4 cut(s)	134, 519, 716, 830
BfmI	CTRYAG	1 cut(s)	102
BglII	AGATCT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	867
BmiI	GGNNCC	2 cut(s)	538, 922
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	3 cut(s)	273, 433, 445
BmsI	GCATC	3 cut(s)	120, 121, 468
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	3 cut(s)	273, 433, 445
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	125, 186, 306, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	6 cut(s)	175, 218, 257, 268, 428, 440
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	4 cut(s)	125, 186, 306, 675
BseGI	GGATG	5 cut(s)	112, 135, 364, 754, 796
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMII	CTCAG	7 cut(s)	12, 99, 111, 201, 461, 750, 777
BseNI	ACTGG	6 cut(s)	175, 218, 257, 268, 428, 440
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	591, 869
BsiHKAI	GWGCWC	1 cut(s)	837
BslFI	GGGAC	3 cut(s)	434, 698, 808
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmFI	GGGAC	3 cut(s)	434, 698, 808
BsmI	GAATGC	4 cut(s)	446, 463, 817, 946
BsnI	GGCC	2 cut(s)	591, 869
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	106, 224, 315, 887
Bsp19I	CCATGG	2 cut(s)	125, 306
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	2 cut(s)	591, 869
BspCNI	CTCAG	7 cut(s)	13, 98, 112, 202, 460, 751, 778
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	538, 922
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	895
BspQI	GCTCTTC	1 cut(s)	568
BsrI	ACTGG	6 cut(s)	175, 218, 257, 268, 428, 440
BssECI	CCNNGG	4 cut(s)	125, 186, 306, 675
BssMI	GATC	4 cut(s)	106, 224, 315, 887
BssNAI	GTATAC	1 cut(s)	292
BssT1I	CCWWGG	3 cut(s)	125, 306, 675
Bst1107I	GTATAC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	41, 361, 745, 799
Bst6I	CTCTTC	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	135, 244
BstDEI	CTNAG	7 cut(s)	21, 85, 120, 210, 447, 759, 786
BstDSI	CCRYGG	2 cut(s)	125, 306
BstF5I	GGATG	5 cut(s)	112, 135, 364, 754, 796
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	109, 227, 318, 890
BstMBI	GATC	4 cut(s)	106, 224, 315, 887
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BstZ17I	GTATAC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	591, 869
BtgI	CCRYGG	2 cut(s)	125, 306
BtsCI	GGATG	5 cut(s)	112, 135, 364, 754, 796
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	4 cut(s)	207, 250, 357, 669
Cac8I	GCNNGC	2 cut(s)	135, 244
CaiI	CAGNNNCTG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	867
CviAII	CATG	6 cut(s)	126, 307, 390, 549, 725, 880
DdeI	CTNAG	7 cut(s)	21, 85, 120, 210, 447, 759, 786
DpnI	GATC	4 cut(s)	108, 226, 317, 889
DpnII	GATC	4 cut(s)	106, 224, 315, 887
DraIII	CACNNNGTG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Eco130I	CCWWGG	3 cut(s)	125, 306, 675
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	3 cut(s)	125, 306, 675
ErhI	CCWWGG	3 cut(s)	125, 306, 675
FaeI	CATG	6 cut(s)	129, 310, 393, 552, 728, 883
FaqI	GGGAC	3 cut(s)	434, 698, 808
FatI	CATG	6 cut(s)	125, 306, 389, 548, 724, 879
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	5 cut(s)	99, 142, 351, 741, 803
FspBI	CTAG	4 cut(s)	134, 519, 716, 830
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	591, 869
Hin1II	CATG	6 cut(s)	129, 310, 393, 552, 728, 883
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	27, 292
Hpy188I	TCNGA	7 cut(s)	22, 88, 224, 397, 498, 661, 787
Hpy188III	TCNNGA	8 cut(s)	150, 349, 530, 716, 725, 758, 830, 854
Hpy8I	GTNNAC	2 cut(s)	27, 292
HpyAV	CCTTC	2 cut(s)	424, 713
HpyCH4III	ACNGT	4 cut(s)	41, 361, 745, 799
HpyCH4V	TGCA	5 cut(s)	112, 444, 481, 815, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	7 cut(s)	21, 85, 120, 210, 447, 759, 786
Hsp92II	CATG	6 cut(s)	129, 310, 393, 552, 728, 883
Kzo9I	GATC	4 cut(s)	106, 224, 315, 887
LguI	GCTCTTC	1 cut(s)	568
LweI	GCATC	3 cut(s)	120, 121, 468
MaeI	CTAG	4 cut(s)	134, 519, 716, 830
MaeIII	GTNAC	5 cut(s)	177, 205, 213, 355, 736
MalI	GATC	4 cut(s)	108, 226, 317, 889
MboI	GATC	4 cut(s)	106, 224, 315, 887
MboII	GAAGA	1 cut(s)	555
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	4 cut(s)	71, 574, 607, 774
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	140, 392
MnlI	CCTC	4 cut(s)	94, 451, 535, 781
MseI	TTAA	2 cut(s)	543, 650
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	4 cut(s)	446, 463, 817, 946
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	2 cut(s)	125, 306
NdeII	GATC	4 cut(s)	106, 224, 315, 887
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	6 cut(s)	129, 310, 393, 552, 728, 883
NlaIV	GGNNCC	2 cut(s)	538, 922
NmuCI	GTSAC	4 cut(s)	177, 205, 213, 355
PagI	TCATGA	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	568
PctI	GAATGC	4 cut(s)	446, 463, 817, 946
PflMI	CCANNNNNTGG	1 cut(s)	681
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PsiI	TTATAA	3 cut(s)	33, 260, 410
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	538, 922
PspPI	GGNCC	1 cut(s)	867
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	2 cut(s)	543, 650
Sau3AI	GATC	4 cut(s)	106, 224, 315, 887
Sau96I	GGNCC	1 cut(s)	867
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	3 cut(s)	120, 121, 468
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	4 cut(s)	71, 574, 607, 774
SsiI	CCGC	1 cut(s)	780
SspMI	CTAG	4 cut(s)	134, 519, 716, 830
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	3 cut(s)	125, 306, 675
TaaI	ACNGT	4 cut(s)	41, 361, 745, 799
TaqI	TCGA	1 cut(s)	531
TasI	AATT	4 cut(s)	71, 574, 607, 774
Tru1I	TTAA	2 cut(s)	543, 650
Tru9I	TTAA	2 cut(s)	543, 650
TscAI	CASTG	4 cut(s)	214, 257, 364, 676
TseFI	GTSAC	4 cut(s)	177, 205, 213, 355
Tsp45I	GTSAC	4 cut(s)	177, 205, 213, 355
TspDTI	ATGAA	9 cut(s)	17, 271, 342, 613, 705, 743, 791, 896, 953
TspRI	CASTG	4 cut(s)	214, 257, 364, 676
Van91I	CCANNNNNTGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	71, 574
XbaI	TCTAGA	2 cut(s)	715, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	4 cut(s)	134, 519, 716, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.