Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

55502088 .. 55504083

Gene Structure 1996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAAGAATTTGCTCAAACCTCAGAGAGAGTGAAGTCTGTAGATCTGCATTCAACTGAGCCATGGATGCTAGCAAGTTTGTATTCAGGAACTATTTGTATTTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAAGTCACTGAGTCACCAGTCAGGTCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACTGGGGCTGATGACAAGTTCATTCGCGTATACAACTACAATACCATGGAAAAGATCAAAGAGTATGAAGCACATACTGATTATATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCACTCAGGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCGAAAGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCAAATTTTACACTACAAGGCCACTCAAAAGGAGTGAATTGTGTTGATTACTTCATTCACAGCGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACTGCCAAGGTGTGGGACTATGAAACTACAAGTTGTGTGAAAACTCTAGAAGGTCATGAGAACAATGTAACAACTGTGAGTGTTCATCCTGAGCTTCCCATAATAATTACCGCTTCTGAGGATGGGACTGTTCATATATGGAATGCAACCACATTTAGTCTAGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGACACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCATTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

296

Amino Acids

33.65

Weight (kDa)

5.99

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	2 - 92	2.4e-10	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	3 - 148	3.7e-19	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	4 - 168	4.3e-14	WDR36/Utp21 second beta-propeller domain
EIF3I	PF24805	6 - 105	1.3e-06	EIF3I
WDR55	PF24796	7 - 191	3.2e-18	WDR55
WD40_Prp19	PF24814	7 - 130	1.7e-17	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	7 - 107	2.6e-10	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	11 - 284	1.8e-28	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	13 - 166	3.9e-17	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	25 - 218	3.2e-25	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	27 - 201	2.1e-14	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	48 - 185	2.5e-29	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	50 - 124	9.7e-11	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	59 - 164	5.3e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR75_1st	PF23869	69 - 122	5.8e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	83 - 120	7.2e-09	WD domain, G-beta repeat
Beta-prop_EIPR1	PF23609	87 - 163	5.9e-07	EIPR1 beta-propeller
Beta-prop_TEP1_2nd	PF25047	91 - 166	7.8e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	107 - 183	1.9e-15	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	110 - 260	4.6e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	125 - 164	1.6e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	126 - 283	2e-28	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	127 - 178	1.6e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	127 - 281	3.8e-22	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	147 - 271	1.7e-27	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	151 - 250	1.5e-07	MABP1/WDR62 second WD40 domain
Beta-prop_SCAP	PF24017	154 - 253	4.1e-08	SCAP Beta-propeller
WD40	PF00400	170 - 208	5.4e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	173 - 259	4.7e-08	CAF1B/HIR1 beta-propeller domain
WDR55	PF24796	176 - 289	2.1e-11	WDR55
Beta-prop_THOC3	PF25174	177 - 266	8.7e-15	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	182 - 286	1.9e-15	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	187 - 253	9.9e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st	PF23869	188 - 252	5.7e-08	WD repeat-containing protein 75 first beta-propeller
WD40_Gbeta	PF25391	190 - 250	1.8e-06	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	190 - 259	1.9e-06	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	191 - 253	7.6e-07	TEP-1 second beta-propeller
WD40	PF00400	213 - 250	3.6e-10	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	227 - 291	2.3e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	197, 347
AccB7I	CCANNNNNTGG	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	717
AclWI	GGATC	1 cut(s)	832
AcsI	RAATTY	2 cut(s)	8, 511
AdeI	CACNNNGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	54, 430, 794
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	179, 352, 700
AluI	AGCT	3 cut(s)	179, 352, 700
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	1 cut(s)	832
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	526, 804
ApoI	RAATTY	2 cut(s)	8, 511
AspS9I	GGNCC	1 cut(s)	804
AsuHPI	GGTGA	1 cut(s)	144
AsuNHI	GCTAGC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	774
BccI	CCATC	4 cut(s)	143, 309, 464, 722
BciT130I	CCWGG	1 cut(s)	125
BfaI	CTAG	4 cut(s)	71, 456, 653, 767
BfmI	CTRYAG	1 cut(s)	39
BglII	AGATCT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	804
BmiI	GGNNCC	2 cut(s)	475, 859
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	3 cut(s)	210, 370, 382
BmsI	GCATC	2 cut(s)	57, 405
BmtI	GCTAGC	1 cut(s)	74
BmuI	ACTGGG	3 cut(s)	210, 370, 382
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	696
BsaJI	CCNNGG	4 cut(s)	62, 123, 243, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
Bse1I	ACTGG	6 cut(s)	112, 155, 194, 205, 365, 377
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	4 cut(s)	62, 123, 243, 612
BseGI	GGATG	4 cut(s)	72, 301, 691, 733
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMII	CTCAG	6 cut(s)	36, 48, 138, 398, 687, 714
BseNI	ACTGG	6 cut(s)	112, 155, 194, 205, 365, 377
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	528, 806
BsiHKAI	GWGCWC	1 cut(s)	774
BslFI	GGGAC	3 cut(s)	371, 635, 745
BslI	CCNNNNNNNGG	1 cut(s)	618
BsmFI	GGGAC	3 cut(s)	371, 635, 745
BsmI	GAATGC	5 cut(s)	49, 383, 400, 754, 883
BsnI	GGCC	2 cut(s)	528, 806
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	43, 252, 824
Bsp19I	CCATGG	2 cut(s)	62, 243
BspACI	CCGC	1 cut(s)	717
BspANI	GGCC	2 cut(s)	528, 806
BspCNI	CTCAG	6 cut(s)	35, 49, 139, 397, 688, 715
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	475, 859
BspOI	GCTAGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	832
BspQI	GCTCTTC	1 cut(s)	505
BsrI	ACTGG	6 cut(s)	112, 155, 194, 205, 365, 377
BssECI	CCNNGG	4 cut(s)	62, 123, 243, 612
BssMI	GATC	3 cut(s)	43, 252, 824
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	3 cut(s)	62, 243, 612
Bst1107I	GTATAC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	3 cut(s)	298, 682, 736
Bst6I	CTCTTC	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	72, 181
BstDEI	CTNAG	6 cut(s)	22, 57, 147, 384, 696, 723
BstDSI	CCRYGG	2 cut(s)	62, 243
BstF5I	GGATG	4 cut(s)	72, 301, 691, 733
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	46, 255, 827
BstMBI	GATC	3 cut(s)	43, 252, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BstZ17I	GTATAC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	528, 806
BtgI	CCRYGG	2 cut(s)	62, 243
BtsCI	GGATG	4 cut(s)	72, 301, 691, 733
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	4 cut(s)	144, 187, 294, 606
Cac8I	GCNNGC	2 cut(s)	72, 181
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	804
CviAII	CATG	6 cut(s)	63, 244, 327, 486, 662, 817
CviJI	RGCY	9 cut(s)	61, 179, 206, 352, 425, 498, 528, 700, 806
CviKI_1	RGCY	9 cut(s)	61, 179, 206, 352, 425, 498, 528, 700, 806
DdeI	CTNAG	6 cut(s)	22, 57, 147, 384, 696, 723
DpnI	GATC	3 cut(s)	45, 254, 826
DpnII	GATC	3 cut(s)	43, 252, 824
DraIII	CACNNNGTG	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco130I	CCWWGG	3 cut(s)	62, 243, 612
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	62, 243, 612
ErhI	CCWWGG	3 cut(s)	62, 243, 612
FaeI	CATG	6 cut(s)	66, 247, 330, 489, 665, 820
FaqI	GGGAC	3 cut(s)	371, 635, 745
FatI	CATG	6 cut(s)	62, 243, 326, 485, 661, 816
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	4 cut(s)	79, 288, 678, 740
FspBI	CTAG	4 cut(s)	71, 456, 653, 767
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	528, 806
Hin1II	CATG	6 cut(s)	66, 247, 330, 489, 665, 820
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	5 cut(s)	25, 334, 435, 598, 724
Hpy188III	TCNNGA	8 cut(s)	87, 286, 467, 653, 662, 695, 767, 791
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	361, 650
HpyCH4III	ACNGT	3 cut(s)	298, 682, 736
HpyCH4V	TGCA	5 cut(s)	49, 381, 418, 752, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	6 cut(s)	22, 57, 147, 384, 696, 723
Hsp92II	CATG	6 cut(s)	66, 247, 330, 489, 665, 820
Kzo9I	GATC	3 cut(s)	43, 252, 824
LguI	GCTCTTC	1 cut(s)	505
LweI	GCATC	2 cut(s)	57, 405
MaeI	CTAG	4 cut(s)	71, 456, 653, 767
MaeIII	GTNAC	5 cut(s)	114, 142, 150, 292, 673
MalI	GATC	3 cut(s)	45, 254, 826
MboI	GATC	3 cut(s)	43, 252, 824
MboII	GAAGA	1 cut(s)	492
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	4 cut(s)	8, 511, 544, 711
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	31, 388, 472, 718
MseI	TTAA	2 cut(s)	480, 587
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	5 cut(s)	49, 383, 400, 754, 883
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	67
NcoI	CCATGG	2 cut(s)	62, 243
NdeII	GATC	3 cut(s)	43, 252, 824
NheI	GCTAGC	1 cut(s)	70
NlaIII	CATG	6 cut(s)	66, 247, 330, 489, 665, 820
NlaIV	GGNNCC	2 cut(s)	475, 859
NmuCI	GTSAC	4 cut(s)	114, 142, 150, 292
PagI	TCATGA	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	505
PctI	GAATGC	5 cut(s)	49, 383, 400, 754, 883
PflMI	CCANNNNNTGG	1 cut(s)	618
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PsiI	TTATAA	2 cut(s)	197, 347
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	475, 859
PspPI	GGNCC	1 cut(s)	804
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	480, 587
Sau3AI	GATC	3 cut(s)	43, 252, 824
Sau96I	GGNCC	1 cut(s)	804
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	2 cut(s)	57, 405
SfcI	CTRYAG	1 cut(s)	39
Sse9I	AATT	4 cut(s)	8, 511, 544, 711
SsiI	CCGC	1 cut(s)	717
SspMI	CTAG	4 cut(s)	71, 456, 653, 767
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	3 cut(s)	62, 243, 612
TaaI	ACNGT	3 cut(s)	298, 682, 736
TaqI	TCGA	1 cut(s)	468
TasI	AATT	4 cut(s)	8, 511, 544, 711
Tru1I	TTAA	2 cut(s)	480, 587
Tru9I	TTAA	2 cut(s)	480, 587
TscAI	CASTG	4 cut(s)	151, 194, 301, 613
TseFI	GTSAC	4 cut(s)	114, 142, 150, 292
Tsp45I	GTSAC	4 cut(s)	114, 142, 150, 292
TspDTI	ATGAA	9 cut(s)	17, 208, 279, 550, 642, 680, 728, 833, 890
TspRI	CASTG	4 cut(s)	151, 194, 301, 613
Van91I	CCANNNNNTGG	1 cut(s)	618
XapI	RAATTY	2 cut(s)	8, 511
XbaI	TCTAGA	2 cut(s)	652, 766
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	4 cut(s)	71, 456, 653, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.