Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Forward (+)

30515082 .. 30517911

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCTCTTTCACTAACTATTGAGAAAGAATTTGCTCAAACCTCAGAGAGAGTGAAGTCTGTAGATCTGCATCCAACTGAGCCATGGATGCTAGCAAGTTTGTATTCAGGAACTATTTGTATTTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAAGTCACTGAGTCACCAGTCAGATCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACCGGGGATGATGACAAGTTCATTCGCGTATACAACTACAATACCATGGAAAAGATCAAAGAGTATGAAGCACATACTGACTATATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCAGTCAGGTCTTTGAGGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCAAATGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCAAATTTTACACTACAAGACCACTCAAAAGGAGTGAATTGTGTTGATTACTTCATTCACAGCGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACTGCCAAGGTATGGGACTATGAAACTACAAGTTGTGTGAAAACTCTAGAAGGTCATGAGAACAATGTAACAACTGTGAGTGTTCATCCTGAGCTTCCCATAATAATTACCACTTCTGAGGATGGGACTGTTCATATATGGAATGCAACCACATTTAGTCTAGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGACACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCATTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

303

Amino Acids

34.49

Weight (kDa)

5.59

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	4 - 171	3.6e-17	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	10 - 155	3.3e-19	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	10 - 175	1.5e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 114	3.1e-11	THOC3 beta-propeller domain
EIF3I	PF24805	13 - 112	3.7e-06	EIF3I
WDR55	PF24796	14 - 199	2.7e-19	WDR55
WD40_Prp19	PF24814	14 - 131	1.1e-16	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	20 - 174	6.9e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	35 - 225	3.2e-25	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	50 - 154	3.2e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR5	PF25175	56 - 172	1.5e-24	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	58 - 131	7e-10	WDHD1 first WD40 domain
WD40	PF00400	90 - 127	7.5e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	98 - 173	7.9e-06	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	105 - 235	2.1e-09	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	114 - 189	5.8e-15	THOC3 beta-propeller domain
WD40	PF00400	132 - 171	4.8e-08	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	132 - 291	2.4e-27	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	134 - 292	1.1e-21	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	135 - 180	6.3e-07	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	154 - 278	8.6e-27	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	154 - 257	7.4e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	155 - 291	1.6e-13	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	161 - 260	5.7e-07	SCAP Beta-propeller
Beta-prop_EML	PF23409	166 - 266	4.2e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	177 - 215	7.2e-09	WD domain, G-beta repeat
WDR55	PF24796	182 - 296	1.2e-11	WDR55
Beta-prop_THOC3	PF25174	184 - 273	2.4e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	188 - 293	1.6e-15	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	193 - 260	2.3e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st	PF23869	195 - 259	5.8e-08	WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz	PF24807	196 - 267	1.2e-06	CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	196 - 267	6.7e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	198 - 260	4.1e-07	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	199 - 257	9.8e-06	MABP1/WDR62 second WD40 domain
WD40	PF00400	220 - 257	9.9e-10	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	234 - 298	4.3e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 368
AccB7I	CCANNNNNTGG	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	246
AclWI	GGATC	1 cut(s)	853
AcsI	RAATTY	2 cut(s)	29, 532
AdeI	CACNNNGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	2 cut(s)	451, 815
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	200, 373, 721
AluI	AGCT	3 cut(s)	200, 373, 721
Alw21I	GWGCWC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	853
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	825
ApoI	RAATTY	2 cut(s)	29, 532
AspS9I	GGNCC	1 cut(s)	825
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	165
AsuNHI	GCTAGC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	795
BccI	CCATC	4 cut(s)	164, 330, 485, 743
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	223
BfaI	CTAG	4 cut(s)	92, 477, 674, 788
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	146, 223
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	2 cut(s)	496, 880
BmrFI	CCNGG	2 cut(s)	146, 223
BmrI	ACTGGG	2 cut(s)	391, 403
BmsI	GCATC	3 cut(s)	78, 79, 426
BmtI	GCTAGC	1 cut(s)	95
BmuI	ACTGGG	2 cut(s)	391, 403
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	717
BpuMI	CCSGG	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	5 cut(s)	83, 144, 222, 264, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse1I	ACTGG	5 cut(s)	133, 176, 215, 386, 398
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	5 cut(s)	83, 144, 222, 264, 633
BseGI	GGATG	6 cut(s)	70, 93, 232, 322, 712, 754
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	5 cut(s)	57, 69, 159, 708, 735
BseNI	ACTGG	5 cut(s)	133, 176, 215, 386, 398
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	3 cut(s)	392, 656, 766
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmFI	GGGAC	3 cut(s)	392, 656, 766
BsmI	GAATGC	4 cut(s)	404, 421, 775, 904
BsnI	GGCC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	4 cut(s)	64, 182, 273, 845
Bsp19I	CCATGG	2 cut(s)	83, 264
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	5 cut(s)	56, 70, 160, 709, 736
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	496, 880
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	853
BspQI	GCTCTTC	1 cut(s)	526
BsrI	ACTGG	5 cut(s)	133, 176, 215, 386, 398
BssECI	CCNNGG	5 cut(s)	83, 144, 222, 264, 633
BssMI	GATC	4 cut(s)	64, 182, 273, 845
BssNAI	GTATAC	1 cut(s)	250
BssT1I	CCWWGG	3 cut(s)	83, 264, 633
Bst1107I	GTATAC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	3 cut(s)	319, 703, 757
Bst6I	CTCTTC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	93, 202
BstDEI	CTNAG	5 cut(s)	43, 78, 168, 717, 744
BstDSI	CCRYGG	2 cut(s)	83, 264
BstF5I	GGATG	6 cut(s)	70, 93, 232, 322, 712, 754
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	67, 185, 276, 848
BstMBI	GATC	4 cut(s)	64, 182, 273, 845
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	144, 221
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZ17I	GTATAC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	2 cut(s)	83, 264
BtsCI	GGATG	6 cut(s)	70, 93, 232, 322, 712, 754
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	165, 208, 315, 627
Cac8I	GCNNGC	2 cut(s)	93, 202
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	825
CviAII	CATG	6 cut(s)	84, 265, 348, 507, 683, 838
CviJI	RGCY	8 cut(s)	5, 82, 200, 373, 446, 519, 721, 827
CviKI_1	RGCY	8 cut(s)	5, 82, 200, 373, 446, 519, 721, 827
DdeI	CTNAG	5 cut(s)	43, 78, 168, 717, 744
DpnI	GATC	4 cut(s)	66, 184, 275, 847
DpnII	GATC	4 cut(s)	64, 182, 273, 845
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	3 cut(s)	83, 264, 633
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	83, 264, 633
ErhI	CCWWGG	3 cut(s)	83, 264, 633
FaeI	CATG	6 cut(s)	87, 268, 351, 510, 686, 841
FaqI	GGGAC	3 cut(s)	392, 656, 766
FatI	CATG	6 cut(s)	83, 264, 347, 506, 682, 837
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	6 cut(s)	57, 100, 239, 309, 699, 761
FspBI	CTAG	4 cut(s)	92, 477, 674, 788
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	6 cut(s)	87, 268, 351, 510, 686, 841
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	5 cut(s)	46, 182, 355, 619, 745
Hpy188III	TCNNGA	8 cut(s)	108, 307, 488, 674, 683, 716, 788, 812
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	382, 671
HpyCH4III	ACNGT	3 cut(s)	319, 703, 757
HpyCH4V	TGCA	5 cut(s)	70, 402, 439, 773, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	5 cut(s)	43, 78, 168, 717, 744
Hsp92II	CATG	6 cut(s)	87, 268, 351, 510, 686, 841
Kzo9I	GATC	4 cut(s)	64, 182, 273, 845
LguI	GCTCTTC	1 cut(s)	526
LweI	GCATC	3 cut(s)	78, 79, 426
MaeI	CTAG	4 cut(s)	92, 477, 674, 788
MaeIII	GTNAC	5 cut(s)	135, 163, 171, 313, 694
MalI	GATC	4 cut(s)	66, 184, 275, 847
MboI	GATC	4 cut(s)	64, 182, 273, 845
MboII	GAAGA	1 cut(s)	513
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	4 cut(s)	29, 532, 565, 732
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	98, 350
MnlI	CCTC	4 cut(s)	52, 409, 493, 739
MseI	TTAA	2 cut(s)	501, 608
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	146, 223
Mva1269I	GAATGC	4 cut(s)	404, 421, 775, 904
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	223
NcoI	CCATGG	2 cut(s)	83, 264
NdeII	GATC	4 cut(s)	64, 182, 273, 845
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	6 cut(s)	87, 268, 351, 510, 686, 841
NlaIV	GGNNCC	2 cut(s)	496, 880
NmuCI	GTSAC	4 cut(s)	135, 163, 171, 313
PagI	TCATGA	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	526
PctI	GAATGC	4 cut(s)	404, 421, 775, 904
PflMI	CCANNNNNTGG	1 cut(s)	639
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PsiI	TTATAA	2 cut(s)	218, 368
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	496, 880
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	526
SaqAI	TTAA	2 cut(s)	501, 608
Sau3AI	GATC	4 cut(s)	64, 182, 273, 845
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	146, 223
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	3 cut(s)	78, 79, 426
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	29, 532, 565, 732
SspMI	CTAG	4 cut(s)	92, 477, 674, 788
StyD4I	CCNGG	2 cut(s)	144, 221
StyI	CCWWGG	3 cut(s)	83, 264, 633
TaaI	ACNGT	3 cut(s)	319, 703, 757
TaqI	TCGA	1 cut(s)	489
TasI	AATT	4 cut(s)	29, 532, 565, 732
Tru1I	TTAA	2 cut(s)	501, 608
Tru9I	TTAA	2 cut(s)	501, 608
TscAI	CASTG	4 cut(s)	172, 215, 322, 634
TseFI	GTSAC	4 cut(s)	135, 163, 171, 313
Tsp45I	GTSAC	4 cut(s)	135, 163, 171, 313
TspDTI	ATGAA	8 cut(s)	229, 300, 571, 663, 701, 749, 854, 911
TspRI	CASTG	4 cut(s)	172, 215, 322, 634
Van91I	CCANNNNNTGG	1 cut(s)	639
XapI	RAATTY	2 cut(s)	29, 532
XbaI	TCTAGA	2 cut(s)	673, 787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	92, 477, 674, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.