Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004864

Physical Location & Seq

Genomic Coordinates Reverse (-)

55201436 .. 55203977

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGTCTTCACGTTGTCCTCACCTGTGAGAGTTCACGTTGTATTCTCAGGGAACTTCTTAAAGAATTTGCTCAAACCTCAGAAAGAGTGAAGTCTGTGGATCTGCATCCAACTGAGCCATGGATGCTAGAAAGTTTGTATTCAGGAACTATTTGTATCTGGAACTACCAGTCACAGACCCTGGAGAAGTCCATCAAAGTCACTGAGTCACCAGTCAGATCAGTAAAGTTTGTAGCTCGCAAACACTGGATTATAACTGGGGCTGATGACAAGTTCATTCGTGTATACAACTACAATACCATGGAAAAGATCAAAGAGTATGAAGCACATACTGACTTTATCAGGAGTGTCACTGTCCATCCAACTCTACCATATCTGCTGTCATGTTCTGATGACAAGGTTATAAAGCTTTGGGACTGGGAGAAGGACTGGGAATGCACTCAGGTCTTTGAAGGGCATTCCCACTATGTGATGCAAGTGGCTTTCAATCCGAATGACACCAATAGTTTTGCTAGTGCCTCTCTCGATGGAACCATTAAGACATGGAACATTGGCTCTTCTGCCCCGAATTTTACATTACAAGGCCACTCGAAAGGAGTGAATTGTGTTGATTATTTCATTCACAGCGATAAGACTTACCTGTTAAGTGGTTCTGATGACTTCACAGCCAAGGTATGGGACTATGAAACTACAAGTTGTGTGCAAACTCTAGAAGGTCATGAGAACAATGTAACTACTGTGAGTGTACATCCTGAGCTTCCCATAATAATTACAACTTCTGAGGATGGGACTGTTCATATATGGAATGCAACAACATTTAGACTAGAGCACAAACTGAACTATGGTCTTGAAAGAGTTTGGGCCATTGGACACATGAAAGGATCATACAAGGTTGCATTTGGTTTTGACAATGGAACCACTATAGTCAAAATGAATGCTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coatomer_WDAD WD40

Protein Analysis

316

Amino Acids

35.93

Weight (kDa)

5.85

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	18 - 111	2.5e-10	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	18 - 167	2.2e-19	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	20 - 126	8.7e-11	THOC3 beta-propeller domain
EIF3I	PF24805	21 - 122	1.6e-06	EIF3I
Beta-prop_WDR3_2nd	PF25172	25 - 183	6.9e-17	WDR3 second beta-propeller domain
WDR55	PF24796	26 - 210	2e-18	WDR55
WD40_Prp19	PF24814	26 - 149	1.3e-16	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	31 - 187	1.8e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	32 - 184	8.9e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	48 - 207	8.9e-13	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	50 - 217	5.3e-21	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	67 - 184	3.2e-25	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	69 - 143	1.8e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	77 - 183	4.3e-10	MABP1/WDR62 second WD40 domain
Beta-prop_WDR75_1st	PF23869	88 - 141	6.1e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	102 - 139	1.1e-08	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	110 - 185	1e-05	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	110 - 202	3.7e-16	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	144 - 298	1.4e-28	WDR3 first beta-propeller domain
WD40	PF00400	144 - 183	2.9e-08	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	146 - 196	4.3e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	147 - 290	9.6e-22	Prp19 WD40 domain
WD40_Gbeta	PF25391	166 - 269	2.2e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	166 - 290	9.6e-28	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	167 - 303	2e-14	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	173 - 272	5.1e-08	SCAP Beta-propeller
WD40	PF00400	189 - 227	5.9e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	192 - 279	2e-08	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	192 - 272	1.2e-06	EIF3I
WDR55	PF24796	195 - 307	1.2e-11	WDR55
Beta-prop_THOC3	PF25174	196 - 282	2.5e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	201 - 303	6.9e-15	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	206 - 273	4e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st	PF23869	207 - 271	8.4e-08	WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz	PF24807	209 - 279	1.4e-06	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	210 - 272	2.6e-07	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	210 - 269	6.8e-06	MABP1/WDR62 second WD40 domain
WD40	PF00400	232 - 269	9.6e-10	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	246 - 309	6.2e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004864)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020
malus_domestica	MD06G1184200.v1.1 MD06G1184300.v1.1
prunus_persica	Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1
pyrus_communis	pycom06g16350
rosa_chinensis	RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721
rosa_laevigata	RLG00000019669 RLG00000019671
rosa_multiflora	Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106900 Rroxscaffold_2G00106920
rosa_rugosa	Rorug02G0344000
rosa_samantha	Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400
rosa_wichuraiana	Rw2G032100 Rw2G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	254, 404
AccB7I	CCANNNNNTGG	1 cut(s)	675
AccI	GTMKAC	1 cut(s)	285
AclWI	GGATC	2 cut(s)	108, 889
AcsI	RAATTY	2 cut(s)	65, 568
AdeI	CACNNNGTG	1 cut(s)	469
AfaI	GTAC	1 cut(s)	747
AfiI	CCNNNNNNNGG	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	452, 487, 851
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	3 cut(s)	236, 409, 757
AluI	AGCT	3 cut(s)	236, 409, 757
Alw21I	GWGCWC	1 cut(s)	831
AlwI	GGATC	2 cut(s)	108, 889
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	583, 861
ApoI	RAATTY	2 cut(s)	65, 568
AspS9I	GGNCC	1 cut(s)	861
AsuHPI	GGTGA	2 cut(s)	13, 201
Bbv12I	GWGCWC	1 cut(s)	831
BccI	CCATC	4 cut(s)	200, 366, 521, 779
BciT130I	CCWGG	1 cut(s)	182
BfaI	CTAG	4 cut(s)	128, 513, 710, 824
BfmI	CTRYAG	1 cut(s)	921
Bme1390I	CCNGG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	861
BmiI	GGNNCC	2 cut(s)	532, 916
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	3 cut(s)	267, 427, 439
BmsI	GCATC	3 cut(s)	114, 115, 462
BmuI	ACTGGG	3 cut(s)	267, 427, 439
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	119, 180, 300, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	675
Bse1I	ACTGG	6 cut(s)	169, 212, 251, 262, 422, 434
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	4 cut(s)	119, 180, 300, 669
BseGI	GGATG	5 cut(s)	106, 129, 358, 748, 790
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	675
BseMII	CTCAG	7 cut(s)	61, 93, 105, 195, 455, 744, 771
BseNI	ACTGG	6 cut(s)	169, 212, 251, 262, 422, 434
BshFI	GGCC	2 cut(s)	585, 863
BsiHKAI	GWGCWC	1 cut(s)	831
BslFI	GGGAC	3 cut(s)	428, 692, 802
BslI	CCNNNNNNNGG	1 cut(s)	675
BsmFI	GGGAC	3 cut(s)	428, 692, 802
BsmI	GAATGC	4 cut(s)	440, 457, 811, 940
BsnI	GGCC	2 cut(s)	585, 863
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp1407I	TGTACA	1 cut(s)	745
Bsp143I	GATC	4 cut(s)	100, 218, 309, 881
Bsp19I	CCATGG	2 cut(s)	119, 300
BspANI	GGCC	2 cut(s)	585, 863
BspCNI	CTCAG	7 cut(s)	60, 92, 106, 196, 454, 745, 772
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	532, 916
BspPI	GGATC	2 cut(s)	108, 889
BspQI	GCTCTTC	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	745
BsrI	ACTGG	6 cut(s)	169, 212, 251, 262, 422, 434
BssECI	CCNNGG	4 cut(s)	119, 180, 300, 669
BssMI	GATC	4 cut(s)	100, 218, 309, 881
BssNAI	GTATAC	1 cut(s)	286
BssT1I	CCWWGG	3 cut(s)	119, 300, 669
Bst1107I	GTATAC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	355, 739, 793
Bst6I	CTCTTC	1 cut(s)	562
BstAUI	TGTACA	1 cut(s)	745
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	7 cut(s)	47, 79, 114, 204, 441, 753, 780
BstDSI	CCRYGG	2 cut(s)	119, 300
BstF5I	GGATG	5 cut(s)	106, 129, 358, 748, 790
BstKTI	GATC	4 cut(s)	103, 221, 312, 884
BstMBI	GATC	4 cut(s)	100, 218, 309, 881
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	921
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	585, 863
BtgI	CCRYGG	2 cut(s)	119, 300
BtsCI	GGATG	5 cut(s)	106, 129, 358, 748, 790
BtsIMutI	CAGTG	3 cut(s)	201, 244, 351
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	6 cut(s)	120, 301, 384, 543, 719, 874
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	7 cut(s)	47, 79, 114, 204, 441, 753, 780
DpnI	GATC	4 cut(s)	102, 220, 311, 883
DpnII	GATC	4 cut(s)	100, 218, 309, 881
DraIII	CACNNNGTG	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
Eco130I	CCWWGG	3 cut(s)	119, 300, 669
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	3 cut(s)	119, 300, 669
ErhI	CCWWGG	3 cut(s)	119, 300, 669
FaeI	CATG	6 cut(s)	123, 304, 387, 546, 722, 877
FaqI	GGGAC	3 cut(s)	428, 692, 802
FatI	CATG	6 cut(s)	119, 300, 383, 542, 718, 873
FblI	GTMKAC	1 cut(s)	285
FokI	GGATG	5 cut(s)	93, 136, 345, 735, 797
FspBI	CTAG	4 cut(s)	128, 513, 710, 824
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	585, 863
Hin1II	CATG	6 cut(s)	123, 304, 387, 546, 722, 877
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	4, 206
HphI	GGTGA	2 cut(s)	13, 201
Hpy166II	GTNNAC	3 cut(s)	35, 286, 746
Hpy188I	TCNGA	6 cut(s)	82, 218, 391, 492, 655, 781
Hpy188III	TCNNGA	8 cut(s)	144, 160, 343, 524, 710, 719, 752, 848
Hpy8I	GTNNAC	3 cut(s)	35, 286, 746
HpyAV	CCTTC	3 cut(s)	418, 446, 707
HpyCH4III	ACNGT	3 cut(s)	355, 739, 793
HpyCH4IV	ACGT	2 cut(s)	12, 37
HpyCH4V	TGCA	6 cut(s)	106, 438, 475, 703, 809, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	7 cut(s)	47, 79, 114, 204, 441, 753, 780
HpySE526I	ACGT	2 cut(s)	12, 37
Hsp92II	CATG	6 cut(s)	123, 304, 387, 546, 722, 877
Kzo9I	GATC	4 cut(s)	100, 218, 309, 881
LguI	GCTCTTC	1 cut(s)	562
LweI	GCATC	3 cut(s)	114, 115, 462
MaeI	CTAG	4 cut(s)	128, 513, 710, 824
MaeII	ACGT	2 cut(s)	12, 37
MaeIII	GTNAC	5 cut(s)	171, 199, 207, 349, 730
MalI	GATC	4 cut(s)	102, 220, 311, 883
MboI	GATC	4 cut(s)	100, 218, 309, 881
MboII	GAAGA	1 cut(s)	549
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	4 cut(s)	65, 568, 601, 768
MlyI	GAGTC	2 cut(s)	13, 215
MmeI	TCCRAC	2 cut(s)	134, 386
MnlI	CCTC	4 cut(s)	29, 88, 529, 775
MseI	TTAA	3 cut(s)	60, 537, 644
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	4 cut(s)	440, 457, 811, 940
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	124
NcoI	CCATGG	2 cut(s)	119, 300
NdeII	GATC	4 cut(s)	100, 218, 309, 881
NlaIII	CATG	6 cut(s)	123, 304, 387, 546, 722, 877
NlaIV	GGNNCC	2 cut(s)	532, 916
NmuCI	GTSAC	4 cut(s)	171, 199, 207, 349
PagI	TCATGA	1 cut(s)	718
PciSI	GCTCTTC	1 cut(s)	562
PctI	GAATGC	4 cut(s)	440, 457, 811, 940
PflMI	CCANNNNNTGG	1 cut(s)	675
PleI	GAGTC	2 cut(s)	12, 214
PpsI	GAGTC	2 cut(s)	12, 214
PsiI	TTATAA	2 cut(s)	254, 404
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	532, 916
PspPI	GGNCC	1 cut(s)	861
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	60, 537, 644
Sau3AI	GATC	4 cut(s)	100, 218, 309, 881
Sau96I	GGNCC	1 cut(s)	861
SchI	GAGTC	2 cut(s)	13, 215
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	3 cut(s)	114, 115, 462
SfcI	CTRYAG	1 cut(s)	921
Sse9I	AATT	4 cut(s)	65, 568, 601, 768
SspMI	CTAG	4 cut(s)	128, 513, 710, 824
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	3 cut(s)	119, 300, 669
TaaI	ACNGT	3 cut(s)	355, 739, 793
TaiI	ACGT	2 cut(s)	15, 40
TaqI	TCGA	2 cut(s)	525, 590
TasI	AATT	4 cut(s)	65, 568, 601, 768
TatI	WGTACW	1 cut(s)	745
Tru1I	TTAA	3 cut(s)	60, 537, 644
Tru9I	TTAA	3 cut(s)	60, 537, 644
TscAI	CASTG	3 cut(s)	208, 251, 358
TseFI	GTSAC	4 cut(s)	171, 199, 207, 349
Tsp45I	GTSAC	4 cut(s)	171, 199, 207, 349
TspDTI	ATGAA	7 cut(s)	265, 336, 607, 699, 785, 890, 947
TspRI	CASTG	3 cut(s)	208, 251, 358
Van91I	CCANNNNNTGG	1 cut(s)	675
XapI	RAATTY	2 cut(s)	65, 568
XbaI	TCTAGA	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	4 cut(s)	128, 513, 710, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.