The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 FvH4_6g31020 |
| malus_domestica | MD06G1184200.v1.1 MD06G1184300.v1.1 |
| prunus_persica | Prupe.3G072200_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003100_v2.0.a1 Prupe.I003200_v2.0.a1 |
| pyrus_communis | pycom06g16350 |
| rosa_chinensis | RchiOBHm_Chr2g0137681 RchiOBHm_Chr2g0137721 |
| rosa_laevigata | RLG00000019669 RLG00000019671 |
| rosa_multiflora | Rmu_sc0007226.1_g000005 Rmu_sc0017146.1_g000001 Rmu_sc0032769.1_g000001 Rmu_sc0036488.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00106900 Rroxscaffold_2G00106920 |
| rosa_rugosa | Rorug02G0344000 |
| rosa_samantha | Rh2AG391900 Rh2BG399300 Rh2BG399500 Rh2BG399700 Rh2DG414400 |
| rosa_wichuraiana | Rw2G032100 Rw2G032130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 67 |
| AclWI | GGATC | 1 cut(s) | 281 |
| AfaI | GTAC | 1 cut(s) | 139 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 67 |
| AgsI | TTSAA | 1 cut(s) | 243 |
| AluBI | AGCT | 1 cut(s) | 149 |
| AluI | AGCT | 1 cut(s) | 149 |
| Alw21I | GWGCWC | 1 cut(s) | 223 |
| AlwI | GGATC | 1 cut(s) | 281 |
| AoxI | GGCC | 1 cut(s) | 253 |
| AspS9I | GGNCC | 1 cut(s) | 253 |
| Bbv12I | GWGCWC | 1 cut(s) | 223 |
| BccI | CCATC | 1 cut(s) | 171 |
| BfaI | CTAG | 2 cut(s) | 102, 216 |
| BmgT120I | GGNCC | 1 cut(s) | 253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 67 |
| BseDI | CCNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 2 cut(s) | 140, 182 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BseMII | CTCAG | 2 cut(s) | 136, 163 |
| BshFI | GGCC | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 1 cut(s) | 223 |
| BslFI | GGGAC | 2 cut(s) | 84, 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BsmFI | GGGAC | 2 cut(s) | 84, 194 |
| BsmI | GAATGC | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 223 |
| Bsp1407I | TGTACA | 1 cut(s) | 137 |
| Bsp143I | GATC | 1 cut(s) | 273 |
| BspANI | GGCC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 2 cut(s) | 137, 164 |
| BspHI | TCATGA | 1 cut(s) | 110 |
| BspPI | GGATC | 1 cut(s) | 281 |
| BsrGI | TGTACA | 1 cut(s) | 137 |
| BssECI | CCNNGG | 1 cut(s) | 61 |
| BssMI | GATC | 1 cut(s) | 273 |
| BssT1I | CCWWGG | 1 cut(s) | 61 |
| Bst4CI | ACNGT | 2 cut(s) | 131, 185 |
| BstAUI | TGTACA | 1 cut(s) | 137 |
| BstDEI | CTNAG | 2 cut(s) | 145, 172 |
| BstF5I | GGATG | 2 cut(s) | 140, 182 |
| BstKTI | GATC | 1 cut(s) | 276 |
| BstMBI | GATC | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 255 |
| BtsCI | GGATG | 2 cut(s) | 140, 182 |
| BtsI | GCAGTG | 1 cut(s) | 55 |
| BtsIMutI | CAGTG | 1 cut(s) | 55 |
| CciI | TCATGA | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 1 cut(s) | 253 |
| Csp6I | GTAC | 1 cut(s) | 138 |
| CviAII | CATG | 2 cut(s) | 111, 266 |
| CviJI | RGCY | 2 cut(s) | 149, 255 |
| CviKI_1 | RGCY | 2 cut(s) | 149, 255 |
| CviQI | GTAC | 1 cut(s) | 138 |
| DdeI | CTNAG | 2 cut(s) | 145, 172 |
| DpnI | GATC | 1 cut(s) | 275 |
| DpnII | GATC | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 61 |
| EcoT14I | CCWWGG | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 61 |
| FaeI | CATG | 2 cut(s) | 114, 269 |
| FaqI | GGGAC | 2 cut(s) | 84, 194 |
| FatI | CATG | 2 cut(s) | 110, 265 |
| FokI | GGATG | 2 cut(s) | 127, 189 |
| FspBI | CTAG | 2 cut(s) | 102, 216 |
| HaeIII | GGCC | 1 cut(s) | 255 |
| Hin1II | CATG | 2 cut(s) | 114, 269 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 138 |
| Hpy188I | TCNGA | 2 cut(s) | 47, 173 |
| Hpy188III | TCNNGA | 5 cut(s) | 102, 111, 144, 216, 240 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 138 |
| HpyAV | CCTTC | 1 cut(s) | 99 |
| HpyCH4III | ACNGT | 2 cut(s) | 131, 185 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 201 |
| HpyF3I | CTNAG | 2 cut(s) | 145, 172 |
| Hsp92II | CATG | 2 cut(s) | 114, 269 |
| Kzo9I | GATC | 1 cut(s) | 273 |
| LpnPI | CCDG | 2 cut(s) | 45, 157 |
| MaeI | CTAG | 2 cut(s) | 102, 216 |
| MaeIII | GTNAC | 1 cut(s) | 122 |
| MalI | GATC | 1 cut(s) | 275 |
| MboI | GATC | 1 cut(s) | 273 |
| MhlI | GDGCHC | 1 cut(s) | 223 |
| MluCI | AATT | 1 cut(s) | 160 |
| MnlI | CCTC | 1 cut(s) | 167 |
| MseI | TTAA | 1 cut(s) | 36 |
| Mva1269I | GAATGC | 1 cut(s) | 203 |
| NdeII | GATC | 1 cut(s) | 273 |
| NlaIII | CATG | 2 cut(s) | 114, 269 |
| PagI | TCATGA | 1 cut(s) | 110 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 16 |
| PctI | GAATGC | 1 cut(s) | 203 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 67 |
| PspPI | GGNCC | 1 cut(s) | 253 |
| RsaI | GTAC | 1 cut(s) | 139 |
| RsaNI | GTAC | 1 cut(s) | 138 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| Sau3AI | GATC | 1 cut(s) | 273 |
| Sau96I | GGNCC | 1 cut(s) | 253 |
| SduI | GDGCHC | 1 cut(s) | 223 |
| SetI | ASST | 4 cut(s) | 34, 67, 110, 151 |
| SgeI | CNNG | 9 cut(s) | 44, 74, 97, 114, 123, 156, 228, 252, 278 |
| Sse9I | AATT | 1 cut(s) | 160 |
| SspMI | CTAG | 2 cut(s) | 102, 216 |
| StyI | CCWWGG | 1 cut(s) | 61 |
| TaaI | ACNGT | 2 cut(s) | 131, 185 |
| TasI | AATT | 1 cut(s) | 160 |
| TatI | WGTACW | 1 cut(s) | 137 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 62 |
| TspDTI | ATGAA | 3 cut(s) | 91, 177, 282 |
| TspRI | CASTG | 1 cut(s) | 62 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 67 |
| XbaI | TCTAGA | 2 cut(s) | 101, 215 |
| XspI | CTAG | 2 cut(s) | 102, 216 |