pycom01g03630

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006605
Physical Location & Seq
Forward (+)
2751297 .. 2752626
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1071 bp
ATGGAACGTGCTGTACGGGATGAATTTTGGGTGAATTTTGGTTCCACACTTGGAACCACTCGTTCCACATTTGGAACACAAAATTATAACATTTTAAGACAAAACTACTCCTTATCATTTTCAATATTTACACCATCCAAAAACCAAACCCTAAAATTCTATCTTTTTCGTTCCATCTTCTCTACCTGTTGCTGCCTTTTCCCGTATTTTCTTGGTTTCTCTGGTTTAACTTGTGCTTGGGAAAAAGAACAAAGTCTGATTTTTAAGGTTTATTACGATTTTGGTTTGGGTTCGGTTGTGAGCTTGGCTTTGTATGATGGAAAAAGCTGGTTCTGCATTTGGTCAACTGAAATGTTAATCAATTGGATGCATTTTAATGGTTATTTTACTGATTATTGGTTAGTGTGTATAATTAAGCCCATTGTTTACGATTGGAGGAAGGTTAGGGATCTTTTCACATGTGTAGATGGCTCGTTTGGTCAACTCGGGCATGGTGATTTCCAGTCACAGCGCTGTCCTGTCAAAGTCTCCTTGTTTGTTGATAAGCATGTGGAGCTAATAGCATGCGAAATGCGCCATTGGCTTGTTTTACTGAAAGTTTTTAAATGTAGTGAGGCTGATTTATGCGGATGTATATGTTTCGTTACATGCTTTAAGCTTTGGATTTTTGTACTACAAGAAGTCATTCCCTTTAATCGATATAACTCATTTGTCGTAGTGTATGATGTTTTCTGCAATCAATATGTTGCACGTGTTTCAGGAGATGAAGTTTATGGATTTGGTTATGGAAAGCGTGATCAACTGGGTATCTCCAAAGGTAAGATCAAATTAATTATGCAAGCATCGCTGCAAATGGAGATCATAGTGCAGCATTGTCTGGTGAGTGCAGCAAATCCCCCTTTCTTGATTTGGTCATATAAAGTTGATCACATTGCTTGTCATACGAATGTCCAAATTAAAAATGTACCAGTTCATGACAGATCTAAGGACTTCCATGCTAGTTTGGTCCATGGTTTCCCACATAGGAAAAAAGCCGGTGCTGATAGGAGGATATTTAGGCGACTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
RCC1 RRM_1

Protein Analysis

357

Amino Acids

41.4

Weight (kDa)

8.88

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCC1 PF00415 156 - 189 5.1e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AciI CCGC 1 cut(s) 627
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 3 cut(s) 23, 34, 155
AcvI CACGTG 1 cut(s) 752
AfaI GTAC 3 cut(s) 15, 672, 966
AfeI AGCGCT 1 cut(s) 512
AflIII ACRYGT 2 cut(s) 458, 751
AgsI TTSAA 1 cut(s) 123
AluBI AGCT 4 cut(s) 303, 327, 556, 658
AluI AGCT 4 cut(s) 303, 327, 556, 658
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 1 cut(s) 456
Ama87I CYCGRG 1 cut(s) 485
Aor51HI AGCGCT 1 cut(s) 512
ApeKI GCWGC 4 cut(s) 192, 847, 868, 887
ApoI RAATTY 3 cut(s) 23, 34, 155
AseI ATTAAT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 2 cut(s) 513, 576
AspS9I GGNCC 1 cut(s) 1006
AsuHPI GGTGA 3 cut(s) 43, 506, 892
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 1006
BbrPI CACGTG 1 cut(s) 752
BbvI GCAGC 4 cut(s) 179, 834, 880, 899
BccI CCATC 4 cut(s) 142, 182, 311, 461
BclI TGATCA 2 cut(s) 796, 925
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 514
BglII AGATCT 1 cut(s) 980
BisI GCNGC 4 cut(s) 193, 848, 869, 888
BlsI GCNGC 4 cut(s) 194, 849, 870, 889
Bme18I GGWCC 1 cut(s) 1006
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 1006
BmiI GGNNCC 2 cut(s) 43, 55
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 2 cut(s) 357, 851
BmuI ACTGGG 1 cut(s) 812
Bsa29I ATCGAT 1 cut(s) 697
BsaAI YACGTR 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 1009
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bse118I RCCGGY 1 cut(s) 1034
Bse1I ACTGG 3 cut(s) 502, 807, 968
Bse3DI GCAATG 1 cut(s) 930
BseCI ATCGAT 1 cut(s) 697
BseDI CCNNGG 1 cut(s) 1009
BseGI GGATG 4 cut(s) 25, 134, 372, 635
BseMI GCAATG 1 cut(s) 930
BseNI ACTGG 3 cut(s) 502, 807, 968
BseXI GCAGC 4 cut(s) 179, 834, 880, 899
BsgI GTGCAG 2 cut(s) 887, 906
BshVI ATCGAT 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 1 cut(s) 1035
BsmAI GTCTC 1 cut(s) 532
BsoBI CYCGRG 1 cut(s) 485
Bsp143I GATC 6 cut(s) 448, 796, 822, 858, 925, 980
Bsp19I CCATGG 1 cut(s) 1009
BspACI CCGC 1 cut(s) 627
BspDI ATCGAT 1 cut(s) 697
BspHI TCATGA 1 cut(s) 973
BspLI GGNNCC 2 cut(s) 43, 55
BspPI GGATC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 1034
BsrI ACTGG 3 cut(s) 502, 807, 968
BssAI RCCGGY 1 cut(s) 1034
BssECI CCNNGG 1 cut(s) 1009
BssMI GATC 6 cut(s) 448, 796, 822, 858, 925, 980
BssT1I CCWWGG 1 cut(s) 1009
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 565, 840
BstDEI CTNAG 2 cut(s) 984, 1064
BstDSI CCRYGG 1 cut(s) 1009
BstF5I GGATG 4 cut(s) 25, 134, 372, 635
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 2 cut(s) 513, 576
BstKTI GATC 6 cut(s) 451, 799, 825, 861, 928, 983
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 6 cut(s) 448, 796, 822, 858, 925, 980
BstMWI GCNNNNNNNGC 5 cut(s) 333, 553, 573, 580, 844
BstNSI RCATGY 4 cut(s) 462, 551, 567, 651
BstV1I GCAGC 4 cut(s) 179, 834, 880, 899
BstX2I RGATCY 2 cut(s) 448, 980
BstYI RGATCY 2 cut(s) 448, 980
Bsu15I ATCGAT 1 cut(s) 697
BsuTUI ATCGAT 1 cut(s) 697
BtgI CCRYGG 1 cut(s) 1009
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 4 cut(s) 25, 134, 372, 635
Cac8I GCNNGC 2 cut(s) 565, 840
CciI TCATGA 1 cut(s) 973
CfoI GCGC 2 cut(s) 513, 576
Cfr10I RCCGGY 1 cut(s) 1034
Cfr13I GGNCC 1 cut(s) 1006
ClaI ATCGAT 1 cut(s) 697
Csp6I GTAC 3 cut(s) 14, 671, 965
CviAII CATG 8 cut(s) 459, 491, 548, 564, 648, 974, 995, 1010
CviQI GTAC 3 cut(s) 14, 671, 965
DdeI CTNAG 2 cut(s) 984, 1064
DpnI GATC 6 cut(s) 450, 798, 824, 860, 927, 982
DpnII GATC 6 cut(s) 448, 796, 822, 858, 925, 980
DraI TTTAAA 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 1006
Eco47III AGCGCT 1 cut(s) 512
Eco72I CACGTG 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 1009
EcoT22I ATGCAT 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 8 cut(s) 462, 494, 551, 567, 651, 977, 998, 1013
FatI CATG 8 cut(s) 458, 490, 547, 563, 647, 973, 994, 1009
FbaI TGATCA 2 cut(s) 796, 925
Fnu4HI GCNGC 4 cut(s) 193, 848, 869, 888
FokI GGATG 4 cut(s) 32, 121, 379, 642
Fsp4HI GCNGC 4 cut(s) 193, 848, 869, 888
FspBI CTAG 1 cut(s) 999
GlaI GCGC 2 cut(s) 512, 575
GluI GCNGC 4 cut(s) 193, 848, 869, 888
HaeII RGCGCY 1 cut(s) 514
HapII CCGG 1 cut(s) 1035
HhaI GCGC 2 cut(s) 513, 576
Hin1II CATG 8 cut(s) 462, 494, 551, 567, 651, 977, 998, 1013
Hin6I GCGC 2 cut(s) 511, 574
HinP1I GCGC 2 cut(s) 511, 574
HincII GTYRAC 2 cut(s) 345, 482
HindII GTYRAC 2 cut(s) 345, 482
HindIII AAGCTT 1 cut(s) 656
HpaII CCGG 1 cut(s) 1035
HphI GGTGA 3 cut(s) 43, 506, 892
Hpy166II GTNNAC 3 cut(s) 345, 427, 482
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 3 cut(s) 759, 904, 974
Hpy8I GTNNAC 3 cut(s) 345, 427, 482
HpyAV CCTTC 1 cut(s) 433
HpyCH4IV ACGT 2 cut(s) 7, 751
HpyCH4V TGCA 8 cut(s) 336, 370, 735, 749, 838, 850, 868, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 333, 553, 573, 580, 844
HpyF3I CTNAG 2 cut(s) 984, 1064
HpySE526I ACGT 2 cut(s) 7, 751
Hsp92II CATG 8 cut(s) 462, 494, 551, 567, 651, 977, 998, 1013
HspAI GCGC 2 cut(s) 511, 574
Ksp22I TGATCA 2 cut(s) 796, 925
Kzo9I GATC 6 cut(s) 448, 796, 822, 858, 925, 980
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 4 cut(s) 179, 834, 880, 899
LweI GCATC 2 cut(s) 357, 851
MaeI CTAG 1 cut(s) 999
MaeII ACGT 2 cut(s) 7, 751
MaeIII GTNAC 2 cut(s) 504, 643
MalI GATC 6 cut(s) 450, 798, 824, 860, 927, 982
MboI GATC 6 cut(s) 448, 796, 822, 858, 925, 980
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 361
MflI RGATCY 2 cut(s) 448, 980
MluCI AATT 9 cut(s) 23, 34, 82, 155, 361, 411, 827, 831, 954
MnlI CCTC 3 cut(s) 429, 607, 1041
Mph1103I ATGCAT 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 684
MslI CAYNNNNRTG 2 cut(s) 375, 945
MspI CCGG 1 cut(s) 1035
MunI CAATTG 1 cut(s) 361
MwoI GCNNNNNNNGC 5 cut(s) 333, 553, 573, 580, 844
NcoI CCATGG 1 cut(s) 1009
NdeII GATC 6 cut(s) 448, 796, 822, 858, 925, 980
NlaIII CATG 8 cut(s) 462, 494, 551, 567, 651, 977, 998, 1013
NlaIV GGNNCC 2 cut(s) 43, 55
NmuCI GTSAC 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 372
NspI RCATGY 4 cut(s) 462, 551, 567, 651
PaeI GCATGC 1 cut(s) 567
PagI TCATGA 1 cut(s) 973
PciI ACATGT 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 684
PkrI GCNGC 4 cut(s) 194, 849, 870, 889
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
Ppu21I YACGTR 1 cut(s) 752
PscI ACATGT 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 830
PsiI TTATAA 1 cut(s) 87
PspCI CACGTG 1 cut(s) 752
PspN4I GGNNCC 2 cut(s) 43, 55
PspPI GGNCC 1 cut(s) 1006
PsrI GAACNNNNNNTAC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 448, 980
RsaI GTAC 3 cut(s) 15, 672, 966
RsaNI GTAC 3 cut(s) 14, 671, 965
RseI CAYNNNNRTG 2 cut(s) 375, 945
SatI GCNGC 4 cut(s) 193, 848, 869, 888
Sau3AI GATC 6 cut(s) 448, 796, 822, 858, 925, 980
Sau96I GGNCC 1 cut(s) 1006
SfaNI GCATC 2 cut(s) 357, 851
SinI GGWCC 1 cut(s) 1006
SmiMI CAYNNNNRTG 2 cut(s) 375, 945
SphI GCATGC 1 cut(s) 567
Sse9I AATT 9 cut(s) 23, 34, 82, 155, 361, 411, 827, 831, 954
SsiI CCGC 1 cut(s) 627
SspI AATATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 999
StyI CCWWGG 1 cut(s) 1009
TaiI ACGT 2 cut(s) 10, 754
TaqI TCGA 1 cut(s) 697
TasI AATT 9 cut(s) 23, 34, 82, 155, 361, 411, 827, 831, 954
TatI WGTACW 1 cut(s) 670
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 4 cut(s) 192, 847, 868, 887
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 3 cut(s) 36, 780, 962
VpaK11BI GGWCC 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 830
XapI RAATTY 3 cut(s) 23, 34, 155
XceI RCATGY 4 cut(s) 462, 551, 567, 651
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 1 cut(s) 999
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.