Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

4227770 .. 4231195

Gene Structure 3426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGTATGGAGGCGGCAACGGTTGCGCCGAGATTGCAAATTTCAACATGGATGGTGGATTCCGACAAGGTTGCGAGGAGGCGGCCGAAGAGCACGTCGGCCGCCTTCTCTCGGAGATTAAGGGACCAAAACATGACCCAGGTGCTTGTTGCAGCTGCAGCCGCTCACCTACCAACCTCAAAAGTCTCTAATCGACAACGACATGTCGCTTTGGAGGTTTCGTGCTCTTACAACAACTTTCCAACTTCAACAGTGGAATCTGGAAACTTTCATACTTCTGATGAATCACTGGTTTTGAAGAATAAGGCACTAGCAATCGAGCCATATTTGAATCGACGTTGTATATATCTAGTTGGTATGATGGGATCTTGGAAAACAACCGTTGGCAAGCTTATGGCGCAAGCACTTAGTTATTCATTCATTGATAGTGATTCATTGGTGGAGCATGATGTTGGTGGAACTTCTGTCGCTGAAATTTTCAAACTCTATGGAGAGGACTTTTTCAGAGATAAGGAGACTGAGGCGCTACATAAACTATCTTTGATGCATCGTCTAGTTGTTTCTACGGGTGGAGGTGCAGTTGTACGCCCTGTCAACTGGAAGTGTATGAAGAAGGGGATTAGTGTCTGGTTAGATGTTCCCTTGGAAGCATTGGCTCAGAGAATTGCAGCTGTGGGAACTGGCTCTCGCCCGCTTTTGCATCACGGGTCAGGGGATGCATACAGAAAAACTTATATGCGTCTGACTAGTCTTTTTGAGGAGAGAGGTGATTCATATGCCAACGCCAATGCTAGGGTTTCCTTGGAAAATATTGCAGCCAAATTGGGCTGTAGAGATGTATCCAATCTCACACCTACTGCCATTGTGATTGAGGCGCTTGAACAAATTGAAGGCTATCTGAAGGAAGAACATAGACATGCACATATTACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

312

Amino Acids

34.44

Weight (kDa)

9.1

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	121 - 274	2e-40	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	5 cut(s)	14, 82, 102, 162, 692
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	2 cut(s)	83, 99
AcsI	RAATTY	2 cut(s)	39, 474
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	111, 792
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	7 cut(s)	45, 249, 298, 331, 481, 881, 890
AhlI	ACTAGT	1 cut(s)	746
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	155, 391, 671
AluI	AGCT	3 cut(s)	155, 391, 671
Alw21I	GWGCWC	2 cut(s)	95, 227
Alw26I	GTCTC	2 cut(s)	190, 509
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	83, 99
ApeKI	GCWGC	5 cut(s)	152, 155, 158, 668, 815
ApoI	RAATTY	2 cut(s)	39, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	4 cut(s)	28, 400, 526, 877
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	158, 779
AvaII	GGWCC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	95, 227
BbvI	GCAGC	5 cut(s)	142, 164, 170, 680, 827
BccI	CCATC	2 cut(s)	46, 355
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	190, 509
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	5 cut(s)	311, 350, 554, 747, 792
BfmI	CTRYAG	2 cut(s)	156, 829
BfoI	RGCGCY	2 cut(s)	527, 878
BfuI	GTATCC	1 cut(s)	850
BisI	GCNGC	9 cut(s)	15, 83, 102, 153, 156, 159, 162, 669, 816
BlsI	GCNGC	9 cut(s)	16, 84, 103, 154, 157, 160, 163, 670, 817
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	4 cut(s)	534, 556, 706, 709
BsaJI	CCNNGG	3 cut(s)	138, 642, 801
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 792
Bse1I	ACTGG	3 cut(s)	294, 602, 685
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	138, 642, 801
BseGI	GGATG	2 cut(s)	57, 721
BseLI	CCNNNNNNNGG	2 cut(s)	111, 792
BseMII	CTCAG	2 cut(s)	510, 671
BseNI	ACTGG	3 cut(s)	294, 602, 685
BseRI	GAGGAG	2 cut(s)	91, 773
BseX3I	CGGCCG	2 cut(s)	83, 99
BseXI	GCAGC	5 cut(s)	142, 164, 170, 680, 827
BsgI	GTGCAG	1 cut(s)	597
Bsh1285I	CGRYCG	2 cut(s)	86, 102
BshFI	GGCC	2 cut(s)	85, 101
BsiEI	CGRYCG	2 cut(s)	86, 102
BsiHKAI	GWGCWC	2 cut(s)	95, 227
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	111, 792
BsmAI	GTCTC	2 cut(s)	190, 509
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	85, 101
Bsp1286I	GDGCHC	2 cut(s)	95, 227
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	5 cut(s)	14, 82, 102, 162, 692
BspANI	GGCC	2 cut(s)	85, 101
BspCNI	CTCAG	2 cut(s)	511, 670
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	294, 602, 685
BssECI	CCNNGG	3 cut(s)	138, 642, 801
BssMI	GATC	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	642, 801
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	3 cut(s)	22, 253, 382
Bst6I	CTCTTC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	389, 402, 692
BstDEI	CTNAG	3 cut(s)	407, 519, 657
BstF5I	GGATG	2 cut(s)	57, 721
BstH2I	RGCGCY	2 cut(s)	527, 878
BstHHI	GCGC	4 cut(s)	28, 400, 526, 877
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	2 cut(s)	190, 509
BstMBI	GATC	1 cut(s)	365
BstMCI	CGRYCG	2 cut(s)	86, 102
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 34, 158, 161, 397
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	2 cut(s)	206, 920
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	156, 829
BstV1I	GCAGC	5 cut(s)	142, 164, 170, 680, 827
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BstZI	CGGCCG	2 cut(s)	83, 99
BsuI	GTATCC	1 cut(s)	850
BsuRI	GGCC	2 cut(s)	85, 101
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	57, 721
BtsIMutI	CAGTG	2 cut(s)	258, 287
Cac8I	GCNNGC	3 cut(s)	389, 402, 692
CfoI	GCGC	4 cut(s)	28, 400, 526, 877
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	5 cut(s)	48, 133, 203, 446, 917
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	3 cut(s)	407, 519, 657
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
EaeI	YGGCCR	2 cut(s)	83, 99
EagI	CGGCCG	2 cut(s)	83, 99
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EclXI	CGGCCG	2 cut(s)	83, 99
Eco130I	CCWWGG	2 cut(s)	642, 801
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	2 cut(s)	83, 99
Eco57I	CTGAAG	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	642, 801
EcoT22I	ATGCAT	2 cut(s)	549, 721
ErhI	CCWWGG	2 cut(s)	642, 801
FaeI	CATG	5 cut(s)	51, 136, 206, 449, 920
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	47, 132, 202, 445, 916
FauI	CCCGC	1 cut(s)	699
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	9 cut(s)	15, 83, 102, 153, 156, 159, 162, 669, 816
FokI	GGATG	2 cut(s)	64, 728
Fsp4HI	GCNGC	9 cut(s)	15, 83, 102, 153, 156, 159, 162, 669, 816
FspBI	CTAG	5 cut(s)	311, 350, 554, 747, 792
GlaI	GCGC	4 cut(s)	27, 399, 525, 876
GluI	GCNGC	9 cut(s)	15, 83, 102, 153, 156, 159, 162, 669, 816
HaeII	RGCGCY	2 cut(s)	527, 878
HaeIII	GGCC	2 cut(s)	85, 101
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	4 cut(s)	28, 400, 526, 877
Hin1II	CATG	5 cut(s)	51, 136, 206, 449, 920
Hin6I	GCGC	4 cut(s)	26, 398, 524, 875
HinP1I	GCGC	4 cut(s)	26, 398, 524, 875
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	6 cut(s)	59, 257, 284, 331, 431, 770
HphI	GGTGA	2 cut(s)	158, 779
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	7 cut(s)	64, 114, 280, 506, 660, 744, 900
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	2 cut(s)	100, 339
HpyAV	CCTTC	4 cut(s)	115, 607, 884, 895
HpyCH4III	ACNGT	3 cut(s)	22, 253, 382
HpyCH4IV	ACGT	3 cut(s)	95, 337, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 34, 158, 161, 397
HpyF3I	CTNAG	3 cut(s)	407, 519, 657
HpySE526I	ACGT	3 cut(s)	95, 337, 929
Hsp92II	CATG	5 cut(s)	51, 136, 206, 449, 920
HspAI	GCGC	4 cut(s)	26, 398, 524, 875
Kzo9I	GATC	1 cut(s)	365
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	9 cut(s)	125, 152, 246, 275, 583, 603, 613, 666, 696
Lsp1109I	GCAGC	5 cut(s)	142, 164, 170, 680, 827
LweI	GCATC	4 cut(s)	534, 556, 706, 709
MaeI	CTAG	5 cut(s)	311, 350, 554, 747, 792
MaeII	ACGT	3 cut(s)	95, 337, 929
MalI	GATC	1 cut(s)	367
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	365
MboII	GAAGA	4 cut(s)	100, 310, 622, 917
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	95, 227
MluCI	AATT	5 cut(s)	39, 474, 663, 821, 885
MmeI	TCCRAC	2 cut(s)	87, 266
Mph1103I	ATGCAT	2 cut(s)	549, 721
MseI	TTAA	1 cut(s)	119
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	155, 671
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	23, 34, 158, 161, 397
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	5 cut(s)	51, 136, 206, 449, 920
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	54
NsiI	ATGCAT	2 cut(s)	549, 721
NspI	RCATGY	2 cut(s)	206, 920
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	6 cut(s)	59, 257, 284, 331, 431, 770
PkrI	GCNGC	9 cut(s)	16, 84, 103, 154, 157, 160, 163, 670, 817
PscI	ACATGT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	2 cut(s)	155, 671
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	915
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	9 cut(s)	15, 83, 102, 153, 156, 159, 162, 669, 816
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	95, 227
SfaNI	GCATC	4 cut(s)	534, 556, 706, 709
SfcI	CTRYAG	2 cut(s)	156, 829
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	746
Sse9I	AATT	5 cut(s)	39, 474, 663, 821, 885
SsiI	CCGC	5 cut(s)	14, 82, 102, 162, 692
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	5 cut(s)	311, 350, 554, 747, 792
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	642, 801
TaaI	ACNGT	3 cut(s)	22, 253, 382
TaiI	ACGT	3 cut(s)	98, 340, 932
TaqI	TCGA	3 cut(s)	193, 318, 334
TasI	AATT	5 cut(s)	39, 474, 663, 821, 885
TauI	GCSGC	4 cut(s)	17, 85, 104, 164
TfiI	GAWTC	6 cut(s)	59, 257, 284, 331, 431, 770
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	258, 294
TseI	GCWGC	5 cut(s)	152, 155, 158, 668, 815
TspDTI	ATGAA	7 cut(s)	260, 297, 405, 409, 423, 623, 762
TspRI	CASTG	2 cut(s)	258, 294
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	39, 474
XceI	RCATGY	2 cut(s)	206, 920
XspI	CTAG	5 cut(s)	311, 350, 554, 747, 792
Zsp2I	ATGCAT	2 cut(s)	549, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.