Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Forward (+)

9558056 .. 9559459

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGTCAGCCCCTGGACCTGGTTCAAGACAGAAAACTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTTTCTAATGATGATGGTACTGAGTTGGCACGCTTGGCTTCACAATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCAAAATCATTAGTTGCTTCTTTGACTCCTCTTCAGAAAGAAACTGAGGTTCCTTCTTTTGTATTGATGGGTATCCCACATGGTACCTTCTGGTCTTCTCTTTCACAACTCGGTGAAGCCTACTCAAGAAGGGATTTGACTGCTATGCATGAGATCCTAGAGAATATCGGCTGTAAAGACGATGGAACGACAAATGAGTTCATTGGTGTTGGAACGATGGTTTCTCCAACAATTTTTGCCCGGTGTAGTTTGTCTTATCTCATGAGTGACAAGCACCAGGAAGCTATAAAAGATGCAATACAAGGACAAGTAGTTTCCCCAGTTTGGGACAGTGCATATTATCTTCAGGCTGTTGCCCTTTCAGCCCTTGGAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.34

Weight (kDa)

4.65

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	116 - 167	1.9e-17	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	3 cut(s)	23, 167, 479
AfaI	GTAC	2 cut(s)	91, 235
AfiI	CCNNNNNNNGG	4 cut(s)	19, 474, 475, 523
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	3 cut(s)	12, 18, 426
AluBI	AGCT	2 cut(s)	73, 434
AluI	AGCT	2 cut(s)	73, 434
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	2 cut(s)	13, 46
Ama87I	CYCGRG	1 cut(s)	135
Asp718I	GGTACC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	4 cut(s)	80, 211, 326, 361
BciT130I	CCWGG	3 cut(s)	14, 20, 428
BciVI	GTATCC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	391
BfaI	CTAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	233
Bme1390I	CCNGG	4 cut(s)	14, 20, 391, 428
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	201, 235
BmrFI	CCNGG	4 cut(s)	14, 20, 391, 428
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	33, 433
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	12, 517
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 474, 475, 523
Bse1I	ACTGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	3 cut(s)	14, 20, 428
BseDI	CCNNGG	2 cut(s)	12, 517
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	4 cut(s)	19, 474, 475, 523
BseMII	CTCAG	2 cut(s)	84, 186
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	4 cut(s)	19, 474, 475, 523
BsmFI	GGGAC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	85, 187
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	201, 235
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	12, 517
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	517
Bst2UI	CCWGG	3 cut(s)	14, 20, 428
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	93, 195
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 512
BstNI	CCWGG	3 cut(s)	14, 20, 428
BstSCI	CCNGG	4 cut(s)	12, 18, 389, 426
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	2 cut(s)	13, 46
CciI	TCATGA	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	16
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	90, 234
CviAII	CATG	3 cut(s)	230, 299, 412
CviJI	RGCY	8 cut(s)	10, 73, 110, 269, 321, 434, 500, 515
CviKI_1	RGCY	8 cut(s)	10, 73, 110, 269, 321, 434, 500, 515
CviQI	GTAC	2 cut(s)	90, 234
DdeI	CTNAG	2 cut(s)	93, 195
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	23, 167, 479
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	3 cut(s)	12, 18, 426
EcoT14I	CCWWGG	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	233, 302, 415
FaiI	YATR	6 cut(s)	231, 296, 300, 413, 437, 487
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	3 cut(s)	229, 298, 411
FspBI	CTAG	1 cut(s)	308
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	3 cut(s)	233, 302, 415
HinfI	GANTC	2 cut(s)	53, 175
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	42, 130, 186
Hpy188III	TCNNGA	3 cut(s)	26, 276, 412
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	4 cut(s)	59, 213, 247, 273
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	3 cut(s)	298, 446, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 512
HpyF3I	CTNAG	2 cut(s)	93, 195
Hsp92II	CATG	3 cut(s)	233, 302, 415
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	303
LpnPI	CCDG	9 cut(s)	5, 26, 32, 226, 404, 413, 440, 482, 483
LweI	GCATC	2 cut(s)	33, 433
MabI	ACCWGGT	1 cut(s)	18
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	173, 237, 485
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	2 cut(s)	340, 401
MnlI	CCTC	2 cut(s)	189, 190
Mph1103I	ATGCAT	1 cut(s)	300
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	4 cut(s)	14, 20, 391, 428
MvaI	CCWGG	3 cut(s)	14, 20, 428
MwoI	GCNNNNNNNGC	2 cut(s)	107, 512
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	233, 302, 415
NlaIV	GGNNCC	2 cut(s)	201, 235
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	300
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	3 cut(s)	12, 18, 426
PspGI	CCWGG	3 cut(s)	12, 18, 426
PspN4I	GGNNCC	2 cut(s)	201, 235
PspPI	GGNCC	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	13, 46
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	91, 235
RsaNI	GTAC	2 cut(s)	90, 234
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	4 cut(s)	14, 20, 391, 428
SetI	ASST	5 cut(s)	21, 75, 201, 239, 436
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	33, 433
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	381
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	4 cut(s)	12, 18, 389, 426
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	482
TasI	AATT	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.