Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014816

Physical Location & Seq

Genomic Coordinates Forward (+)

17354987 .. 17357075

Gene Structure 2089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTAATGGATTCTGCTTTGGAGGGTAATTTCTCAAACGATGACGGAACTGAGTTAGTACGCTTAGCTTCCCGTTGTCTGCAATATGAAGCTCGGGAGCGGCCAAATGCAAAGTCCCTCATCACTGCTCTCATGTCACTTCAGAAAGAAACAGAGGTTGCTTCACATGTTTTGATGGGTATTGCACATGAAACCGCATCCTCAACGCAGCCATTGGCATTAACACCTTTTGGAGAAGCTTGTTTGAGAAGGGATCTCACTGCCATACATGAAATATTGGAAAAGAATGGATACAAGGACGATGAAGGCATTGCTAATGAGCTTTCTTTCCAGCTGTGGACTAATCAAATGCAGGAGACTTTGAATTCTAAGAAGAGTGGAGATTCTGCTTTTCGAGCTAAAGAATTTACAACTGCGATTGATTCCTATACAGAATTCATTGATGGCGGGACCATGGTATCACCCACGGTGTATGCTCGGCGCTGCCTCTCTTACCTGATGAGTGATATGGCACAAGAAGCTCTTGGGGACGCTATGCAAGCCCAGGTGGTTTCTCCCGAGTGGCCGGCGGCTTTATATCTTCAAGCAGCTTGCCTGTTCAGGCTTGGCATGGACAATGATGCACAAGAAACACTCAAAGATGGCACAAATTTGGAAGCCAAAAAGAACAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

24.86

Weight (kDa)

4.72

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	79 - 196	1.2e-63	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014816)

Species	Orthologous Gene IDs
malus_domestica	MD01G1088500.v1.1 MD05G1020300.v1.1 MD11G1085100.v1.1
prunus_persica	Prupe.6G065500_v2.0.a1 Prupe.6G065500_v2.0.a1
pyrus_communis	pycom01g08590 pycom07g06710 pycom12g14880
rosa_multiflora	Rmu_co8319927.1_g000001 Rmu_sc0000015.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013800 Rroxscaffold_1G00013810
rosa_rugosa	Rorug05G0383900
rosa_samantha	Rh3DG134600 Rh5BG460400 Rh5CG482700 Rh5DG475500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	4 cut(s)	100, 195, 447, 569
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	2 cut(s)	101, 563
AcsI	RAATTY	4 cut(s)	364, 404, 434, 649
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	364, 584
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	8 cut(s)	68, 92, 239, 322, 334, 398, 521, 590
AluI	AGCT	8 cut(s)	68, 92, 239, 322, 334, 398, 521, 590
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	2 cut(s)	93, 557
AoxI	GGCC	2 cut(s)	101, 563
ApeKI	GCWGC	3 cut(s)	208, 483, 587
ApoI	RAATTY	4 cut(s)	364, 404, 434, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	453
AvaI	CYCGRG	2 cut(s)	93, 557
AvaII	GGWCC	1 cut(s)	450
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BbvI	GCAGC	3 cut(s)	220, 470, 599
BccI	CCATC	3 cut(s)	169, 437, 635
BciT130I	CCWGG	1 cut(s)	545
BciVI	GTATCC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	101, 209, 484, 570, 588
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	5 cut(s)	102, 210, 485, 571, 589
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	450
BmeT110I	CYCGRG	2 cut(s)	93, 557
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	206, 610
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	453, 465, 543
Bse118I	RCCGGY	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	3 cut(s)	453, 465, 543
BseGI	GGATG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	220, 470, 599
BshFI	GGCC	2 cut(s)	103, 565
BsiHKCI	CYCGRG	2 cut(s)	93, 557
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	3 cut(s)	100, 463, 542
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	3 cut(s)	100, 463, 542
BsnI	GGCC	2 cut(s)	103, 565
BsoBI	CYCGRG	2 cut(s)	93, 557
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	4 cut(s)	100, 195, 447, 569
BspANI	GGCC	2 cut(s)	103, 565
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	453, 465, 543
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	540, 567, 592
BstDEI	CTNAG	3 cut(s)	51, 64, 369
BstDSI	CCRYGG	2 cut(s)	453, 465
BstF5I	GGATG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 518, 539
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	220, 470, 599
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	103, 565
BtgI	CCRYGG	2 cut(s)	453, 465
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	2 cut(s)	123, 258
BtsIMutI	CAGTG	2 cut(s)	123, 258
Cac8I	GCNNGC	3 cut(s)	540, 567, 592
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	450
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	6 cut(s)	133, 167, 188, 269, 454, 610
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	3 cut(s)	51, 64, 369
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	101, 563
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	2 cut(s)	93, 557
EcoRI	GAATTC	2 cut(s)	364, 434
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	6 cut(s)	136, 170, 191, 272, 457, 613
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	3 cut(s)	100, 463, 542
FatI	CATG	6 cut(s)	132, 166, 187, 268, 453, 609
FauI	CCCGC	1 cut(s)	440
Fnu4HI	GCNGC	5 cut(s)	101, 209, 484, 570, 588
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	101, 209, 484, 570, 588
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	5 cut(s)	101, 209, 484, 570, 588
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	103, 565
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	136, 170, 191, 272, 457, 613
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	11, 383, 422
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	95, 557
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	243, 299
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	6 cut(s)	82, 110, 185, 352, 538, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 518, 539
HpyF3I	CTNAG	3 cut(s)	51, 64, 369
Hsp92II	CATG	6 cut(s)	136, 170, 191, 272, 457, 613
HspAI	GCGC	1 cut(s)	481
KroI	GCCGGC	1 cut(s)	565
KroNI	GCCGGC	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	338, 344, 509, 530, 557, 579, 586, 608
Lsp1109I	GCAGC	3 cut(s)	220, 470, 599
LweI	GCATC	2 cut(s)	206, 610
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	385, 572
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	5 cut(s)	28, 364, 404, 434, 649
MnlI	CCTC	5 cut(s)	16, 128, 148, 211, 497
MroNI	GCCGGC	1 cut(s)	565
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	3 cut(s)	395, 518, 539
NaeI	GCCGGC	1 cut(s)	567
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	1 cut(s)	253
NgoMIV	GCCGGC	1 cut(s)	565
NlaIII	CATG	6 cut(s)	136, 170, 191, 272, 457, 613
NlaIV	GGNNCC	1 cut(s)	451
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	170
PciI	ACATGT	1 cut(s)	166
PdiI	GCCGGC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	11, 383, 422
PkrI	GCNGC	5 cut(s)	102, 210, 485, 571, 589
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	5 cut(s)	101, 209, 484, 570, 588
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	450
ScrFI	CCNGG	1 cut(s)	545
SfaNI	GCATC	2 cut(s)	206, 610
SinI	GGWCC	1 cut(s)	450
Sse9I	AATT	5 cut(s)	28, 364, 404, 434, 649
SsiI	CCGC	4 cut(s)	100, 195, 447, 569
SspI	AATATT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	1 cut(s)	394
TasI	AATT	5 cut(s)	28, 364, 404, 434, 649
TauI	GCSGC	2 cut(s)	103, 572
TfiI	GAWTC	3 cut(s)	11, 383, 422
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	2 cut(s)	130, 265
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	3 cut(s)	208, 483, 587
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	5 cut(s)	102, 204, 285, 318, 427
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	130, 265
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	4 cut(s)	364, 404, 434, 649
XceI	RCATGY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.